View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6621_low_5 (Length: 294)
Name: NF6621_low_5
Description: NF6621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6621_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 8683420 - 8683688
Alignment:
| Q |
16 |
catgttataaatggaaaatgtttcactctttagcgttttcattttgctgactttgtctacatgtttgtttgaatttcctagaggtttactatgacaatga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8683420 |
catgttataaatggaaaatgtttcactctttagcgttttcattttgctgactttgtctacatgtttgtttgaatttcctagaggtttactatgacaatga |
8683519 |
T |
|
| Q |
116 |
gagggattcaaggtgctttgatcataagttcaagtttccaaatggctattggannnnnnnnnnnnnggagaaatgctgtcaggttagtatctgtaacgtc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
8683520 |
gagggattcaaggtgctttgatcataagttcaagtttccaaatggctattggattttttggtttttggagaaatgctgtcaggttagtatctgtaacttc |
8683619 |
T |
|
| Q |
216 |
ttttgtttcgatttttatgtaaatctttgatttgttatcttatatgttcattgattcattcacaggttc |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8683620 |
ttttgtttcgatttttatgtaaatctttgatttgttatcttatatgttcattgattcattcacaggttc |
8683688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University