View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6622_high_10 (Length: 507)

Name: NF6622_high_10
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6622_high_10
NF6622_high_10
[»] chr6 (24 HSPs)
chr6 (1-489)||(34225481-34225969)
chr6 (63-146)||(28715256-28715339)
chr6 (52-146)||(8776988-8777090)
chr6 (54-146)||(5970123-5970217)
chr6 (54-104)||(7938060-7938110)
chr6 (55-146)||(16766642-16766741)
chr6 (54-159)||(33817901-33818006)
chr6 (54-146)||(9107385-9107485)
chr6 (54-100)||(18367781-18367827)
chr6 (51-104)||(10294048-10294101)
chr6 (55-146)||(7801171-7801259)
chr6 (53-104)||(9027121-9027172)
chr6 (46-91)||(12868747-12868792)
chr6 (52-104)||(426579-426631)
chr6 (106-146)||(10770689-10770729)
chr6 (106-146)||(31384924-31384964)
chr6 (106-146)||(34595138-34595178)
chr6 (55-89)||(7027197-7027231)
chr6 (60-90)||(31673565-31673595)
chr6 (58-91)||(4118411-4118444)
chr6 (110-162)||(31579223-31579276)
chr6 (106-146)||(1681762-1681802)
chr6 (111-147)||(16388247-16388283)
chr6 (106-146)||(16833312-16833352)
[»] chr7 (21 HSPs)
chr7 (54-146)||(9778452-9778544)
chr7 (54-146)||(13300362-13300454)
chr7 (53-147)||(1656627-1656721)
chr7 (95-146)||(26033476-26033527)
chr7 (54-91)||(17851375-17851412)
chr7 (52-146)||(25481844-25481946)
chr7 (48-104)||(1433392-1433448)
chr7 (109-157)||(2424621-2424669)
chr7 (56-104)||(11061141-11061189)
chr7 (55-91)||(35861903-35861939)
chr7 (56-91)||(1885519-1885554)
chr7 (54-146)||(5409851-5409951)
chr7 (100-147)||(11665454-11665501)
chr7 (56-91)||(21141060-21141095)
chr7 (97-146)||(3991319-3991368)
chr7 (74-143)||(10230091-10230160)
chr7 (109-146)||(24339649-24339686)
chr7 (52-146)||(25822603-25822699)
chr7 (54-91)||(30730981-30731018)
chr7 (109-157)||(12289121-12289169)
chr7 (109-149)||(29787381-29787421)
[»] chr1 (27 HSPs)
chr1 (51-146)||(18190123-18190218)
chr1 (54-146)||(22881631-22881725)
chr1 (54-147)||(398779-398880)
chr1 (54-146)||(38078676-38078771)
chr1 (54-100)||(10577804-10577850)
chr1 (54-104)||(48548027-48548077)
chr1 (57-147)||(23531792-23531890)
chr1 (69-146)||(24577201-24577280)
chr1 (54-88)||(25934572-25934606)
chr1 (55-104)||(16297348-16297397)
chr1 (48-146)||(42359464-42359570)
chr1 (54-90)||(24334774-24334810)
chr1 (55-91)||(31694788-31694824)
chr1 (100-147)||(1486723-1486770)
chr1 (55-90)||(6415075-6415110)
chr1 (109-202)||(25452108-25452200)
chr1 (57-147)||(26830542-26830633)
chr1 (95-146)||(40258948-40258999)
chr1 (52-91)||(40456034-40456073)
chr1 (54-104)||(6612236-6612286)
chr1 (52-82)||(51409979-51410009)
chr1 (109-146)||(113306-113343)
chr1 (54-91)||(10475049-10475086)
chr1 (54-94)||(351133-351173)
chr1 (55-91)||(3490462-3490498)
chr1 (108-162)||(14248836-14248889)
chr1 (52-100)||(41597539-41597587)
[»] chr2 (25 HSPs)
chr2 (55-147)||(44860273-44860365)
chr2 (54-147)||(18631420-18631514)
chr2 (54-146)||(21374714-21374809)
chr2 (54-91)||(26769461-26769498)
chr2 (55-103)||(18276466-18276514)
chr2 (54-147)||(27447028-27447116)
chr2 (54-143)||(24975343-24975431)
chr2 (54-146)||(1886893-1886985)
chr2 (102-146)||(15657864-15657908)
chr2 (68-147)||(4207823-4207902)
chr2 (47-82)||(19980657-19980692)
chr2 (51-82)||(44770207-44770238)
chr2 (109-147)||(28677916-28677954)
chr2 (54-88)||(31283992-31284026)
chr2 (54-104)||(34785047-34785097)
chr2 (46-76)||(37419696-37419726)
chr2 (101-146)||(12940950-12940995)
chr2 (109-146)||(30717545-30717582)
chr2 (52-89)||(41462143-41462180)
chr2 (107-147)||(12668437-12668477)
chr2 (109-149)||(21782830-21782870)
chr2 (54-82)||(27084230-27084258)
chr2 (110-146)||(30404865-30404901)
chr2 (170-214)||(37419839-37419883)
chr2 (54-82)||(37558939-37558967)
[»] chr4 (25 HSPs)
chr4 (53-146)||(4157101-4157193)
chr4 (54-104)||(20633429-20633479)
chr4 (51-125)||(28470338-28470412)
chr4 (52-149)||(21873383-21873480)
chr4 (52-149)||(21929244-21929341)
chr4 (95-147)||(54580037-54580089)
chr4 (54-146)||(3947781-3947874)
chr4 (54-146)||(23293001-23293101)
chr4 (53-104)||(44081642-44081693)
chr4 (54-104)||(5111589-5111639)
chr4 (54-91)||(37203222-37203259)
chr4 (52-89)||(46084046-46084083)
chr4 (53-89)||(11110751-11110787)
chr4 (109-149)||(17425401-17425441)
chr4 (60-104)||(27706242-27706286)
chr4 (63-147)||(35157999-35158091)
chr4 (51-147)||(36635265-36635369)
chr4 (42-104)||(24613776-24613838)
chr4 (54-92)||(53957366-53957404)
chr4 (109-146)||(11596367-11596404)
chr4 (54-91)||(24343451-24343488)
chr4 (109-146)||(28964263-28964300)
chr4 (109-146)||(29205451-29205488)
chr4 (54-82)||(22234954-22234982)
chr4 (50-82)||(29205404-29205436)
[»] chr5 (25 HSPs)
chr5 (52-147)||(6471903-6471998)
chr5 (54-104)||(15382421-15382471)
chr5 (54-104)||(21522694-21522744)
chr5 (54-104)||(21533260-21533310)
chr5 (55-147)||(32766957-32767049)
chr5 (59-143)||(13287417-13287509)
chr5 (53-100)||(23016060-23016107)
chr5 (54-211)||(6770487-6770662)
chr5 (53-91)||(20683324-20683362)
chr5 (54-91)||(34276801-34276838)
chr5 (56-146)||(41995417-41995515)
chr5 (57-88)||(8419985-8420016)
chr5 (54-104)||(6326362-6326412)
chr5 (54-100)||(6401442-6401488)
chr5 (67-146)||(21191071-21191158)
chr5 (56-90)||(25351133-25351167)
chr5 (100-146)||(39698539-39698585)
chr5 (97-147)||(40131616-40131666)
chr5 (52-82)||(43001760-43001790)
chr5 (109-146)||(6247629-6247666)
chr5 (97-146)||(15405070-15405119)
chr5 (97-146)||(21351920-21351969)
chr5 (109-146)||(21576760-21576797)
chr5 (54-87)||(32426934-32426967)
chr5 (55-91)||(28862262-28862298)
[»] chr3 (38 HSPs)
chr3 (54-146)||(21479068-21479162)
chr3 (54-147)||(14027959-14028052)
chr3 (54-101)||(750687-750734)
chr3 (53-104)||(10335351-10335402)
chr3 (52-147)||(11313814-11313909)
chr3 (52-143)||(3164043-3164142)
chr3 (54-146)||(14747511-14747606)
chr3 (53-100)||(10318109-10318156)
chr3 (54-104)||(7171446-7171496)
chr3 (54-104)||(15796359-15796409)
chr3 (55-89)||(17568750-17568784)
chr3 (54-104)||(24205106-24205156)
chr3 (54-104)||(35994802-35994852)
chr3 (47-84)||(13845584-13845621)
chr3 (55-104)||(16000081-16000130)
chr3 (94-146)||(1509531-1509583)
chr3 (106-146)||(34910321-34910361)
chr3 (95-143)||(51206371-51206419)
chr3 (393-441)||(51581880-51581928)
chr3 (55-90)||(33313442-33313477)
chr3 (52-91)||(52369737-52369776)
chr3 (79-149)||(3618858-3618928)
chr3 (109-147)||(7928457-7928495)
chr3 (106-144)||(10954956-10954994)
chr3 (109-147)||(25948901-25948939)
chr3 (100-146)||(26508108-26508154)
chr3 (109-146)||(4987306-4987343)
chr3 (54-91)||(15812897-15812934)
chr3 (54-91)||(15864789-15864826)
chr3 (109-146)||(28918008-28918045)
chr3 (54-91)||(38731162-38731199)
chr3 (170-207)||(40052397-40052434)
chr3 (109-149)||(11251985-11252025)
chr3 (106-146)||(14209117-14209157)
chr3 (109-145)||(14979188-14979224)
chr3 (54-82)||(23870622-23870650)
chr3 (54-82)||(45451523-45451551)
chr3 (106-146)||(55401079-55401119)
[»] chr8 (19 HSPs)
chr8 (53-117)||(16642018-16642082)
chr8 (53-104)||(24413625-24413676)
chr8 (63-146)||(25566802-25566885)
chr8 (55-104)||(926853-926902)
chr8 (53-100)||(43737882-43737929)
chr8 (54-104)||(22651920-22651970)
chr8 (54-104)||(29510369-29510419)
chr8 (51-100)||(3951598-3951647)
chr8 (69-146)||(8342939-8343016)
chr8 (54-91)||(20785537-20785574)
chr8 (107-146)||(4948657-4948696)
chr8 (54-104)||(18964115-18964165)
chr8 (54-91)||(2572134-2572171)
chr8 (106-147)||(15816143-15816184)
chr8 (50-91)||(24857949-24857990)
chr8 (54-82)||(5137490-5137518)
chr8 (54-90)||(29447413-29447449)
chr8 (106-146)||(36450769-36450809)
chr8 (54-82)||(36450823-36450851)
[»] scaffold0116 (1 HSPs)
scaffold0116 (54-100)||(9842-9888)
[»] scaffold0053 (1 HSPs)
scaffold0053 (54-104)||(8742-8792)
[»] scaffold0027 (1 HSPs)
scaffold0027 (54-146)||(46626-46726)
[»] scaffold0021 (1 HSPs)
scaffold0021 (54-104)||(130426-130476)
[»] scaffold0361 (1 HSPs)
scaffold0361 (106-146)||(14534-14574)
[»] scaffold0171 (1 HSPs)
scaffold0171 (50-82)||(23367-23399)
[»] scaffold0049 (1 HSPs)
scaffold0049 (54-86)||(63709-63741)
[»] scaffold0652 (1 HSPs)
scaffold0652 (56-103)||(528-575)
[»] scaffold0011 (1 HSPs)
scaffold0011 (56-146)||(17764-17851)
[»] scaffold0122 (1 HSPs)
scaffold0122 (55-146)||(7961-8054)
[»] scaffold0007 (1 HSPs)
scaffold0007 (54-104)||(225333-225383)
[»] scaffold0223 (1 HSPs)
scaffold0223 (109-146)||(20179-20216)
[»] scaffold0136 (1 HSPs)
scaffold0136 (54-91)||(3932-3969)
[»] scaffold0103 (1 HSPs)
scaffold0103 (109-146)||(51818-51855)
[»] scaffold0475 (1 HSPs)
scaffold0475 (56-104)||(3262-3310)


Alignment Details
Target: chr6 (Bit Score: 404; Significance: 0; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 34225969 - 34225481
Alignment:
Q  1 aaataaataaataaatgaaatgcaaattcaggtaacattgtcttagttgtaatctatgaagcacggatacggacacggacaccggacacgataaggacac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34225969 aaataaataaataaatgaaatgcaaattcaggtaacattgtcttagttgatatctatgaagcacggatacggacacggacactggacacgataaggacac 34225870  T
Q  101 tgactcaactaataattagaaaaaatcgcataattcagtgtaattatgtttcgtgtcggacaagctgatacacgcctaattcgaggagtgttcgtgcgtc 200  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| ||||||| |||||| || |||||||||||||||||||    
T  34225869 tgacacaactaataatttgaaaaaatcgcataattcagtgtaattatgtgtcgtgtcgaacacgctgatatacgcctgatccgaggagtgttcgtgcgtc 34225770  T
Q  201 ataggttgcaattaacattccaccaacttcacagaaacatcttcaccacaagattttggatcataactctatgcatacaattacaattcctttatattgg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34225769 ataggttgcaattaacattccaccaacttcacagaaacatcttcatgacaagattttggatcataactctatgcatacaattacaattcctttatattgg 34225670  T
Q  301 attaaagggtgtccctacttgttattggagatgcaaattaaaatcaattccataataatcaattgaaaattacataagaaacaaaaaataccaaccttct 400  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34225669 attaaagggtgtccctacttgtttttggagatgcaaattaaaatcaattccataataatcaattgaaaattacataaaaaacaaaaaataccaaccttct 34225570  T
Q  401 gaggaactgtgtcatcaacatgcacaaaatactgcctgaaaatatgnnnnnnngtgaaattcaaattcagcttatcaattaagaagaaa 489  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||    
T  34225569 gaggaactgtgtcatcaacatgcacaaaatactgcctgaaaatgtgaaaaaaagtgaaattcaaattcagcttatcaattaagaagaaa 34225481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 28715256 - 28715339
Alignment:
Q  63 acggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||||||||||||||||||||||||| |||||||||| |  ||||||||| ||||||||  ||||||||||||||||||    
T  28715256 acggatacggacacggacaccggacacgatacggacactgacacggctaataatttgaaaaaatgacataattcagtgtaatta 28715339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 8777090 - 8776988
Alignment:
Q  52 atctatgaagcacggatacggacacggacaccggacacgataaggacact--------gactcaactaataattagaaaaaatcgcataattcagtgtaa 143  Q
    |||||||||||||||||||||||||||||| ||||||||| | |||||||        ||| |||||||||||| ||||||||| || ||||||||||||    
T  8777090 atctatgaagcacggatacggacacggacaacggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatcacaaaattcagtgtaa 8776991  T
Q  144 tta 146  Q
    |||    
T  8776990 tta 8776988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 5970217 - 5970123
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacac--tgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||||| ||||||||||||||||||||||| || | ||||||   ||| ||  |||||||| ||||||||| ||||||||||||||||||    
T  5970217 ctatgaagcacagatacggacacggacaccggacatgacacggacacgtcgacacagttaataatttgaaaaaatcacataattcagtgtaatta 5970123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 7938060 - 7938110
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  7938060 ctatgaagcacggatacggacacggacaccggacacgacatggacactgac 7938110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 16766642 - 16766741
Alignment:
Q  55 tatgaagcacggatacggacacggacaccggacacgataaggacact--------gactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||| ||||||||||||||||||||||||||| | |||||||        ||| || ||||||||| ||||||||| ||||||||||||||||||    
T  16766642 tatgaagcatggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 16766741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 33817901 - 33818006
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaattatgtttcg 153  Q
    ||||||||||||||||| | || ||||||||||||||  | | |||||||| |  ||||||||| || |||||  ||||||||||||||||||| | |||    
T  33817901 ctatgaagcacggatacagtcatggacaccggacacggcacgaacactgacaccgctaataattggagaaaatttcataattcagtgtaattatatatcg 33818000  T
Q  154 tgtcgg 159  Q
    ||||||    
T  33818001 tgtcgg 33818006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 9107485 - 9107385
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacact--------gactcaactaataattagaaaaaatcgcataattcagtgtaatt 145  Q
    ||||||||||||||||| |||||||||||||||||||| | |||||||        ||| || ||||||||| ||||||||| || ||||||||||||||    
T  9107485 ctatgaagcacggatactgacacggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaatt 9107386  T
Q  146 a 146  Q
    |    
T  9107385 a 9107385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 18367781 - 18367827
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacac 100  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||    
T  18367781 ctatgaagcacggatacggacacggacaccggacacgacatggacac 18367827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 10294048 - 10294101
Alignment:
Q  51 aatctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    ||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||    
T  10294048 aatctatgaagcacggatacggacacgaacaccggacacgacacggatactgac 10294101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 7801259 - 7801171
Alignment:
Q  55 tatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||||||||||||||||||| |||| ||||  |||  || | ||| |||||||||||| ||||||||| |||||||||| |||||||    
T  7801259 tatgaagcacggatacggacacggataccgaacac--taac-acgccgacacaactaataatttgaaaaaatcacataattcagcgtaatta 7801171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 9027121 - 9027172
Alignment:
Q  53 tctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||||||||| ||||||||||||||| |||||||||| | ||||||||||    
T  9027121 tctatgaagcaccgatacggacacggactccggacacgacacggacactgac 9027172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 12868792 - 12868747
Alignment:
Q  46 gttgtaatctatgaagcacggatacggacacggacaccggacacga 91  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||    
T  12868792 gttgtagtctatgaagcagggatacggactcggacaccggacacga 12868747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 426631 - 426579
Alignment:
Q  52 atctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||||||||| |||||| |||||||| ||||||||||| | ||||||||||    
T  426631 atctatgaagcatggatacagacacggataccggacacgacacggacactgac 426579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 10770729 - 10770689
Alignment:
Q  106 caactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  10770729 caactaataatttgaaaaaatcacataattcagtgtaatta 10770689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 31384924 - 31384964
Alignment:
Q  106 caactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  31384924 caactaataatttgaaaaaatcacataattcagtgtaatta 31384964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 34595138 - 34595178
Alignment:
Q  106 caactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  34595138 caactaataatttgaaaaaatcacataattcagtgtaatta 34595178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 7027197 - 7027231
Alignment:
Q  55 tatgaagcacggatacggacacggacaccggacac 89  Q
    ||||||||||||||||||||||||||| |||||||    
T  7027197 tatgaagcacggatacggacacggacatcggacac 7027231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 90
Target Start/End: Complemental strand, 31673595 - 31673565
Alignment:
Q  60 agcacggatacggacacggacaccggacacg 90  Q
    |||||||||||||||||||||||||||||||    
T  31673595 agcacggatacggacacggacaccggacacg 31673565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 4118444 - 4118411
Alignment:
Q  58 gaagcacggatacggacacggacaccggacacga 91  Q
    ||||||| ||||||||||||||||||||||||||    
T  4118444 gaagcactgatacggacacggacaccggacacga 4118411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 31579276 - 31579223
Alignment:
Q  110 taataattagaaaaaatcgcataattcagtgtaattatgtttc-gtgtcggaca 162  Q
    |||||||| || |||||| ||||||||||||||||||||| || ||||||||||    
T  31579276 taataatttgagaaaatcacataattcagtgtaattatgtgtcggtgtcggaca 31579223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 1681762 - 1681802
Alignment:
Q  106 caactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||||||| ||||||||| | ||||||||||||||||    
T  1681762 caactaataatttgaaaaaatcacgtaattcagtgtaatta 1681802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 16388283 - 16388247
Alignment:
Q  111 aataattagaaaaaatcgcataattcagtgtaattat 147  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  16388283 aataatttgaaaaaatcacataattcagtgtaattat 16388247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 16833312 - 16833352
Alignment:
Q  106 caactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||||||| ||||||||| |||| |||||||||||||    
T  16833312 caactaataatttgaaaaaatcacatacttcagtgtaatta 16833352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 9778452 - 9778544
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||| || || |||||| ||||||||| ||||||||||| ||||||    
T  9778452 ctatgaagcacggatacggacacggacaccggacacgacacggacactgacacagctgataatttgaaaaaatcacataattcagtataatta 9778544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 13300362 - 13300454
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||||| ||||| | |||||||||||| |||||| | ||| ||||||  ||||||||||| |||||||||  |||||||||||||||||    
T  13300362 ctatgaagcagggatatgaacacggacaccgaacacgacacggatactgacataactaataatttgaaaaaatcatataattcagtgtaatta 13300454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 1656627 - 1656721
Alignment:
Q  53 tctatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    ||||||||| ||||||| ||||||||| | ||||||||| | |||||| ||| |||||||   ||  |||||||| |||||||||||||||||||    
T  1656627 tctatgaagtacggatatggacacggatatcggacacgacacggacaccgacacaactaaattttttaaaaaatcacataattcagtgtaattat 1656721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 26033527 - 26033476
Alignment:
Q  95 ggacactgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||||| || ||||||||| ||||||||| ||||||||||||||||||    
T  26033527 ggacactgacgcagctaataatttgaaaaaatcacataattcagtgtaatta 26033476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 17851375 - 17851412
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacga 91  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  17851375 ctatgaagcacggatacagacacggacaccggacacga 17851412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 25481844 - 25481946
Alignment:
Q  52 atctatgaagcacggatacggacacggacaccggacacgataaggaca--------ctgactcaactaataattagaaaaaatcgcataattcagtgtaa 143  Q
    ||||||||||||||||||| |||||||||| ||||||| | | |||||        | ||| || ||||||||| ||||||||| |||||||||||||||    
T  25481844 atctatgaagcacggatacagacacggacatcggacacaacatggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaa 25481943  T
Q  144 tta 146  Q
    |||    
T  25481944 tta 25481946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 1433392 - 1433448
Alignment:
Q  48 tgtaatctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||| | ||||| ||||    
T  1433392 tgtaacctatgaagcacggatacgggcacggacaccgaacacgacacggacattgac 1433448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 2424621 - 2424669
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaattatgtttcgtgtc 157  Q
    ||||||||| || |||||| ||||||||||||||||||||| |||||||    
T  2424621 ctaataatttgagaaaatcacataattcagtgtaattatgtatcgtgtc 2424669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 11061189 - 11061141
Alignment:
Q  56 atgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||||||||||||||||||||||| |||| |||| | ||||||||||    
T  11061189 atgaagcacggatacggacacggacatcggatacgacacggacactgac 11061141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 35861903 - 35861939
Alignment:
Q  55 tatgaagcacggatacggacacggacaccggacacga 91  Q
    |||||||||||||||||||| ||||||||||||||||    
T  35861903 tatgaagcacggatacggacgcggacaccggacacga 35861939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 1885519 - 1885554
Alignment:
Q  56 atgaagcacggatacggacacggacaccggacacga 91  Q
    ||||||||||||||| ||||||||||||||||||||    
T  1885519 atgaagcacggatacagacacggacaccggacacga 1885554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 5409951 - 5409851
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac--------tcaactaataattagaaaaaatcgcataattcagtgtaatt 145  Q
    ||||||||||||||||| ||||| ||||||||| |||| | ||||||||||         || ||||||||| ||||||||| |||||||||||| ||||    
T  5409951 ctatgaagcacggatacagacacagacaccggatacgacatggacactgacacgctgatacagctaataatttgaaaaaatcacataattcagtgcaatt 5409852  T
Q  146 a 146  Q
    |    
T  5409851 a 5409851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 11665501 - 11665454
Alignment:
Q  100 ctgactcaactaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    ||||| |||||||||||| ||||||||| ||||||||||| |||||||    
T  11665501 ctgacacaactaataatttgaaaaaatcacataattcagtctaattat 11665454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 21141095 - 21141060
Alignment:
Q  56 atgaagcacggatacggacacggacaccggacacga 91  Q
    ||||||||||||||||||||||||||||| ||||||    
T  21141095 atgaagcacggatacggacacggacaccgtacacga 21141060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 3991319 - 3991368
Alignment:
Q  97 acactgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||| ||| |||||||||||| ||||||||| ||||||||||| ||||||    
T  3991319 acaccgacacaactaataatttgaaaaaatcacataattcagtataatta 3991368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 10230160 - 10230091
Alignment:
Q  74 cacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaa 143  Q
    ||||||||||||||| || | |||||||||||||  |||||||| ||  ||||  |||||||||||||||    
T  10230160 cacggacaccggacatgacacggacactgactcagataataatttgaggaaatgacataattcagtgtaa 10230091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 24339649 - 24339686
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  24339649 ctaataatttgaaaaaatcacataattcagtgtaatta 24339686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 25822603 - 25822699
Alignment:
Q  52 atctatgaagcacggatacggacacggacaccggacacgataaggacact--gactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||| ||||||||| |||| |||||||||| |||| |  |||||   ||| |||||||||||| |||||||   || |||||||||||||||    
T  25822603 atctatgaaacacggatacagacatggacaccggatacgacatagacacgccgacacaactaataatttgaaaaaaaatcacaattcagtgtaatta 25822699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 30730981 - 30731018
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacga 91  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  30730981 ctatgaagcacagatacggacacggacaccagacacga 30731018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 12289121 - 12289169
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaattatgtttcgtgtc 157  Q
    ||||||||| || |||||| |||||||||||| |||||||| |||||||    
T  12289121 ctaataatttgagaaaatcacataattcagtggaattatgtgtcgtgtc 12289169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 29787421 - 29787381
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaattatgt 149  Q
    ||||||||| || |||||| |||||||||||||||||||||    
T  29787421 ctaataatttgagaaaatcacataattcagtgtaattatgt 29787381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 18190218 - 18190123
Alignment:
Q  51 aatctatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||||||| ||||||||||| ||||||||||||||| | ||| |||||| || ||||||||| ||||||||  ||||||||||||||||||    
T  18190218 aatctatgaagcatggatacggacatggacaccggacacgacacggatactgacacacctaataatttgaaaaaattacataattcagtgtaatta 18190123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 22881725 - 22881631
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggaca--ctgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||||||||||  |||||||||||||||||||| |  ||||  | ||| |||||||||||| ||||||||| ||||||| ||||||||||    
T  22881725 ctatgaagcacggatatagacacggacaccggacacgacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaatta 22881631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 398880 - 398779
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacact--------gactcaactaataattagaaaaaatcgcataattcagtgtaatt 145  Q
    ||||||||||||||||||||| |||||||||||||||| | |||||||        ||| |  ||||||||| ||||||||| |||||||||||||||||    
T  398880 ctatgaagcacggatacggacgcggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaatt 398781  T
Q  146 at 147  Q
    ||    
T  398780 at 398779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 38078771 - 38078676
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacg-ataaggacac--tgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||||||||||||||||||||||||||||||| | |  |||||   ||| || ||||||||| ||||||||| ||||||||| ||||||||    
T  38078771 ctatgaagcacggatacggacacggacaccggacacgaacactgacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaatta 38078676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 10577850 - 10577804
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacac 100  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||    
T  10577850 ctatgaagcacggatacggacacggacaccggacacgacacggacac 10577804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 48548077 - 48548027
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||| ||||    
T  48548077 ctatgaagcacggatacggacacggacaccggacacaatacggacaatgac 48548027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 23531890 - 23531792
Alignment:
Q  57 tgaagcacggatacggacacggacaccggacacgataaggacactgac---tcaa-----ctaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    |||||||||||||||||||||||||| |||||||||| |||||| |||   ||||     ||||||||| ||||| ||| ||||||||| |||||||||    
T  23531890 tgaagcacggatacggacacggacactggacacgatacggacaccgacacttcaatactgctaataatttgaaaatatcacataattcaatgtaattat 23531792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 24577280 - 24577201
Alignment:
Q  69 acggacacggacaccggacacgataaggacac--tgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||| |||||||| | |||||| | ||||||  |||| |||||||||||| ||||||||| ||||||||||||||||||    
T  24577280 acggatacggacactgaacacgacacggacacgctgacacaactaataatttgaaaaaatcacataattcagtgtaatta 24577201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 25934572 - 25934606
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggaca 88  Q
    |||||||||||||||||||||||||||||||||||    
T  25934572 ctatgaagcacggatacggacacggacaccggaca 25934606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 16297397 - 16297348
Alignment:
Q  55 tatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||| ||||||    
T  16297397 tatgaagcacggatacggacatggacatcggacacgatacggatactgac 16297348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 42359570 - 42359464
Alignment:
Q  48 tgtaatctatgaagcacggatacggacacggacaccggacacgataaggaca--------ctgactcaactaataattagaaaaaatcgcataattcagt 139  Q
    |||| ||||||||||||||||||||||||| |||||| |||| | | |||||        ||||| || ||||||||| ||||||||| || ||||||||    
T  42359570 tgtattctatgaagcacggatacggacacgaacaccgtacacaacacggacactgacacgctgacacatctaataatttgaaaaaatcacaaaattcagt 42359471  T
Q  140 gtaatta 146  Q
    |||||||    
T  42359470 gtaatta 42359464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 24334810 - 24334774
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacg 90  Q
    |||||||||| ||||||||||||||||||||||||||    
T  24334810 ctatgaagcatggatacggacacggacaccggacacg 24334774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 31694824 - 31694788
Alignment:
Q  55 tatgaagcacggatacggacacggacaccggacacga 91  Q
    ||||||||||||||||||| |||||||||||||||||    
T  31694824 tatgaagcacggatacggatacggacaccggacacga 31694788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 1486770 - 1486723
Alignment:
Q  100 ctgactcaactaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    ||||| || ||||||||| ||||||||| |||||||||||||||||||    
T  1486770 ctgacacagctaataatttgaaaaaatcacataattcagtgtaattat 1486723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 90
Target Start/End: Complemental strand, 6415110 - 6415075
Alignment:
Q  55 tatgaagcacggatacggacacggacaccggacacg 90  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6415110 tatgaagcacggatacggacacgaacaccggacacg 6415075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 25452200 - 25452108
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaattatgtttc-gtgtcggacaagctgatacacgcctaattcgaggagtgttcgtgcgtcat 202  Q
    ||||||||| || |||||| ||||||||||||||||||||| || ||||| ||||  | |  |||||||||||||||| ||||| ||||| ||||    
T  25452200 ctaataatttgagaaaatctcataattcagtgtaattatgtgtcggtgtcagaca--ccggaacacgcctaattcgagcagtgtccgtgcttcat 25452108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 26830542 - 26830633
Alignment:
Q  57 tgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataa-ttagaaaaaatcgcataattcagtgtaattat 147  Q
    ||||||||||||| ||||||||||| ||||||||| | ||| ||  || ||| |||||| ||| |||||||| ||||||| | |||||||||    
T  26830542 tgaagcacggatatggacacggacatcggacacgacacggataccaacacaaataataatttaaaaaaaatcacataattaaatgtaattat 26830633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 40258999 - 40258948
Alignment:
Q  95 ggacactgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||| ||| ||| |||||||| ||||||||| ||||||||||||||||||    
T  40258999 ggacaccgacacaattaataatttgaaaaaatcacataattcagtgtaatta 40258948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 40456073 - 40456034
Alignment:
Q  52 atctatgaagcacggatacggacacggacaccggacacga 91  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  40456073 atctgtgaagcatggatacggacacggacaccggacacga 40456034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 6612286 - 6612236
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    ||||||||||| |||||||||||| ||||||||||||| | ||||| ||||    
T  6612286 ctatgaagcacagatacggacacgaacaccggacacgacacggacaatgac 6612236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 82
Target Start/End: Original strand, 51409979 - 51410009
Alignment:
Q  52 atctatgaagcacggatacggacacggacac 82  Q
    |||||||||||||||||||||||||||||||    
T  51409979 atctatgaagcacggatacggacacggacac 51410009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 113306 - 113343
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  113306 ctaataatttgaaaaaatcacataattcagtgtaatta 113343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 10475086 - 10475049
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacga 91  Q
    |||||||||||||||| | |||||||||||||||||||    
T  10475086 ctatgaagcacggatatgaacacggacaccggacacga 10475049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 351173 - 351133
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataa 94  Q
    ||||||||||||||||||||||  | |||||||||||||||    
T  351173 ctatgaagcacggatacggacattggcaccggacacgataa 351133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 3490498 - 3490462
Alignment:
Q  55 tatgaagcacggatacggacacggacaccggacacga 91  Q
    ||||||||||||||||||| || ||||||||||||||    
T  3490498 tatgaagcacggatacggatacagacaccggacacga 3490462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 14248836 - 14248889
Alignment:
Q  108 actaataattagaaaaaatcgcataattcagtgtaattatgtttc-gtgtcggaca 162  Q
    |||||||||| |||||||||  |||||||||||||||||||| || ||||||||||    
T  14248836 actaataatttgaaaaaatc--ataattcagtgtaattatgtgtcagtgtcggaca 14248889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 41597587 - 41597539
Alignment:
Q  52 atctatgaagcacggatacggacacggacaccggacacgataaggacac 100  Q
    |||||||||||||||||||||| |||||||||  |||||| | ||||||    
T  41597587 atctatgaagcacggatacggatacggacaccaaacacgacacggacac 41597539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 44860273 - 44860365
Alignment:
Q  55 tatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    ||||||||||||||||||| ||| ||||| ||||||| | |||||||||| |  ||||||||| || ||||||||||||||||||||||||||    
T  44860273 tatgaagcacggatacggatacgtacaccagacacgacacggacactgacaccgctaataatttgagaaaatcgcataattcagtgtaattat 44860365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 18631514 - 18631420
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattag-aaaaaatcgcataattcagtgtaattat 147  Q
    ||||||||||| |||||| ||||||||||||||||||| | ||||||| || |  ||||||||| | |||||||| ||| ||||| |||||||||    
T  18631514 ctatgaagcacagatacgaacacggacaccggacacgacacggacactaacacctctaataatttgaaaaaaatcacatcattcaatgtaattat 18631420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 21374809 - 21374714
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacg---ataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||||||||||||||||||||||||||||||||   |  |  || | ||| || ||||||||| ||||||||  ||||||||||||||||||    
T  21374809 ctatgaagcacggatacggacacggacaccggacacggacactaacacgccgacacagctaataatttgaaaaaattacataattcagtgtaatta 21374714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 26769461 - 26769498
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacga 91  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26769461 ctatgaagcacggatacggacacggacaccggacacga 26769498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 18276466 - 18276514
Alignment:
Q  55 tatgaagcacggatacggacacggacaccggacacgataaggacactga 103  Q
    |||||||||||||||| ||||||||||||||||||||||  ||||||||    
T  18276466 tatgaagcacggatacagacacggacaccggacacgatacagacactga 18276514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 27447116 - 27447028
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    ||||||||||||||||||||||||||||||||||| |||    |||| ||| | ||| |||||| || || ||| |||||||||||||||||||    
T  27447116 ctatgaagcacggatacggacacggacaccggacatgat----acaccgacac-actgataatttgagaagatcccataattcagtgtaattat 27447028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 24975431 - 24975343
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaa 143  Q
    ||||||||||| ||||| | |||||||||||||||||| |  ||||| ||| |  ||||||||| || ||||||| ||||||||||||||    
T  24975431 ctatgaagcacagatacaggcacggacaccggacacgacactgacac-gacaccgctaataatttgagaaaatcgtataattcagtgtaa 24975343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 1886985 - 1886893
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||||||||||| ||||||||||| ||| |||| | ||||||  || ||  |||||||| |||||| |  ||||||||| ||||||||    
T  1886985 ctatgaagcacggatacagacacggacactggatacgacatggacaccaacacagttaataatttgaaaaatttacataattcaatgtaatta 1886893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 15657864 - 15657908
Alignment:
Q  102 gactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||||||||||| | ||||||| ||||||||||||||||||    
T  15657864 gactcaactaataatttgtaaaaatcacataattcagtgtaatta 15657908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 4207823 - 4207902
Alignment:
Q  68 tacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    ||||||||||| || |  |||||| | | |||||||| | |||||||||| ||||||| ||||||||| |||||||||||    
T  4207823 tacggacacgggcaacaaacacgacacgcacactgacaccactaataatttgaaaaaagcgcataatttagtgtaattat 4207902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 19980657 - 19980692
Alignment:
Q  47 ttgtaatctatgaagcacggatacggacacggacac 82  Q
    |||||||||||||||||| |||||||||||||||||    
T  19980657 ttgtaatctatgaagcacagatacggacacggacac 19980692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 82
Target Start/End: Complemental strand, 44770238 - 44770207
Alignment:
Q  51 aatctatgaagcacggatacggacacggacac 82  Q
    ||||||||||||||||||||||||||||||||    
T  44770238 aatctatgaagcacggatacggacacggacac 44770207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 28677916 - 28677954
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  28677916 ctaataatttgaaaaaatcacataattcagtgtaattat 28677954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 31283992 - 31284026
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggaca 88  Q
    ||||||||||| |||||||||||||||||||||||    
T  31283992 ctatgaagcacagatacggacacggacaccggaca 31284026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 34785097 - 34785047
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    ||||||||||| ||||||||||||||| || ||||||| | ||||||||||    
T  34785097 ctatgaagcacagatacggacacggaccccagacacgacacggacactgac 34785047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 76
Target Start/End: Original strand, 37419696 - 37419726
Alignment:
Q  46 gttgtaatctatgaagcacggatacggacac 76  Q
    |||||||||||||||||||||||||||||||    
T  37419696 gttgtaatctatgaagcacggatacggacac 37419726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 12940995 - 12940950
Alignment:
Q  101 tgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||| |||||||||||| |||||||||  |||||||||||||||||    
T  12940995 tgacacaactaataatttgaaaaaatcatataattcagtgtaatta 12940950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 30717582 - 30717545
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  30717582 ctaataatttgaaaaaatcacataattcagtgtaatta 30717545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 41462180 - 41462143
Alignment:
Q  52 atctatgaagcacggatacggacacggacaccggacac 89  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  41462180 atctatgaagcatggatacggacacggacatcggacac 41462143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 12668477 - 12668437
Alignment:
Q  107 aactaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    ||||||||||| ||||||||  |||||||||||||||||||    
T  12668477 aactaataatttgaaaaaatgacataattcagtgtaattat 12668437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 21782870 - 21782830
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaattatgt 149  Q
    ||||||||| || |||||| |||||||||||||||||||||    
T  21782870 ctaataatttgagaaaatcacataattcagtgtaattatgt 21782830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 82
Target Start/End: Original strand, 27084230 - 27084258
Alignment:
Q  54 ctatgaagcacggatacggacacggacac 82  Q
    |||||||||||||||||||||||||||||    
T  27084230 ctatgaagcacggatacggacacggacac 27084258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 30404901 - 30404865
Alignment:
Q  110 taataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  30404901 taataatttgaaaaaatcacataattcagtgtaatta 30404865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 37419839 - 37419883
Alignment:
Q  170 acacgcctaattcgaggagtgttcgtgcgtcataggttgcaatta 214  Q
    ||||||||||| |||||||||| ||||| |||||||||| |||||    
T  37419839 acacgcctaatccgaggagtgtccgtgcttcataggttgtaatta 37419883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 82
Target Start/End: Original strand, 37558939 - 37558967
Alignment:
Q  54 ctatgaagcacggatacggacacggacac 82  Q
    |||||||||||||||||||||||||||||    
T  37558939 ctatgaagcacggatacggacacggacac 37558967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 4157101 - 4157193
Alignment:
Q  53 tctatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||||||||||||||||||||||||| ||||||| |  ||||||||| |||||||||||| | ||||||| ||||||| |||| |||||    
T  4157101 tctatgaagcacggatacggacacggacaccagacacgacacagacactgacacaactaataatttg-aaaaatcacataatttagtgcaatta 4157193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 20633429 - 20633479
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  20633429 ctatgaagcacggatacggacacggacaccagacacgatacggacactgac 20633479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 28470338 - 28470412
Alignment:
Q  51 aatctatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaa 125  Q
    ||||||||||||||||||||||| |||||||||||| | || |  ||||||||| |||||||||||| |||||||    
T  28470338 aatctatgaagcacggatacggatacggacaccggatatgacacagacactgacacaactaataatttgaaaaaa 28470412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 21873480 - 21873383
Alignment:
Q  52 atctatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaattatgt 149  Q
    |||||| |||||||||||| ||||||||||  |||||||| | |||||||||| |  | ||||||| || |||||| |||||||||||| ||||||||    
T  21873480 atctattaagcacggatacagacacggacattggacacgacacggacactgacactgcaaataatttgataaaatcacataattcagtgaaattatgt 21873383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 21929341 - 21929244
Alignment:
Q  52 atctatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaattatgt 149  Q
    |||||| |||||||||||| ||||||||||  |||||||| | |||||||||| |  | ||||||| || |||||| |||||||||||| ||||||||    
T  21929341 atctattaagcacggatacagacacggacattggacacgacacggacactgacactgcaaataatttgataaaatcacataattcagtgaaattatgt 21929244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 54580089 - 54580037
Alignment:
Q  95 ggacactgactcaactaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    |||| ||||| |||||||||||| ||||||||| |||||||||||||||||||    
T  54580089 ggacgctgacacaactaataatttgaaaaaatcacataattcagtgtaattat 54580037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 3947874 - 3947781
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggaca--ctgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||| | ||||||||||||||||||  ||| || | |||||  | ||| || ||||||||| ||||||||||||||||||||||||||||    
T  3947874 ctatgaagctcagatacggacacggacaccacaca-gacacggacatgccgacacagctaataatttgaaaaaatcgcataattcagtgtaatta 3947781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 23293101 - 23293001
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggaca--------ctgactcaactaataattagaaaaaatcgcataattcagtgtaatt 145  Q
    ||||||||||| |||||||||||||||||||||||||| | |||||        | ||| || ||||||||| ||||||||| ||||||||||| |||||    
T  23293101 ctatgaagcacagatacggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtataatt 23293002  T
Q  146 a 146  Q
    |    
T  23293001 a 23293001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 44081693 - 44081642
Alignment:
Q  53 tctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||||||||| |||||||||||| ||| ||||||||| ||||||||||||    
T  44081693 tctatgaagcaccgatacggacacgaacatcggacacgacaaggacactgac 44081642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 5111589 - 5111639
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    ||||||||||||||||||| ||||||||||||| |||| | ||||||||||    
T  5111589 ctatgaagcacggatacgggcacggacaccggatacgacatggacactgac 5111639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 37203222 - 37203259
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacga 91  Q
    |||||||||||||||| |||||||||||||||||||||    
T  37203222 ctatgaagcacggatatggacacggacaccggacacga 37203259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 46084083 - 46084046
Alignment:
Q  52 atctatgaagcacggatacggacacggacaccggacac 89  Q
    |||||||||||| |||||||||||||||||||||||||    
T  46084083 atctatgaagcatggatacggacacggacaccggacac 46084046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 11110787 - 11110751
Alignment:
Q  53 tctatgaagcacggatacggacacggacaccggacac 89  Q
    |||||||||||||||||| ||||||||||||||||||    
T  11110787 tctatgaagcacggataccgacacggacaccggacac 11110751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 17425441 - 17425401
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaattatgt 149  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  17425441 ctaataatttgagaaaatcgcataattcagtgtaattatgt 17425401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 27706286 - 27706242
Alignment:
Q  60 agcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||||||||||||||||||||| ||||||| | ||||||||||    
T  27706286 agcacggatacggacacggacaccagacacgacagggacactgac 27706242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 35158091 - 35157999
Alignment:
Q  63 acggatacggacacggacaccggacacgataaggacact--------gactcaactaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    ||||||||||||||||||||||||||| | | |||||||        ||| |||||||||||| | ||||||| ||||||| |||||||||||    
T  35158091 acggatacggacacggacaccggacacaacacggacactgacacgccgacgcaactaataatttggaaaaatcacataatttagtgtaattat 35157999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 36635265 - 36635369
Alignment:
Q  51 aatctatgaagcacggatacggacacggacaccggacacgataaggacactg--------actcaactaataattagaaaaaatcgcataattcagtgta 142  Q
    ||||||||||||| ||||| |||||| ||||||||||||||   ||||||||        || | |||||||||| || |||||| ||||||||||||||    
T  36635265 aatctatgaagcatggataaggacacagacaccggacacgactcggacactgacacgccaacaccactaataatttgagaaaatcacataattcagtgta 36635364  T
Q  143 attat 147  Q
    |||||    
T  36635365 attat 36635369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 24613838 - 24613776
Alignment:
Q  42 cttagttgtaatctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||| ||| ||||||||||| ||||||||||| |||||| |||||||| | | ||||||||    
T  24613838 cttagtagtactctatgaagcatggatacggacatggacactggacacgacacgaacactgac 24613776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 53957404 - 53957366
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgat 92  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  53957404 ctatgaagcacgaatacggacacagacaccggacacgat 53957366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 11596404 - 11596367
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  11596404 ctaataatttgaaaaaatcacataattcagtgtaatta 11596367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 24343451 - 24343488
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacga 91  Q
    |||||||||||||| || ||||||||||||||||||||    
T  24343451 ctatgaagcacggacacagacacggacaccggacacga 24343488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 28964300 - 28964263
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  28964300 ctaataatttgaaaaaatcacataattcagtgtaatta 28964263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 29205451 - 29205488
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  29205451 ctaataatttgaaaaaatcacataattcagtgtaatta 29205488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 22234982 - 22234954
Alignment:
Q  54 ctatgaagcacggatacggacacggacac 82  Q
    |||||||||||||||||||||||||||||    
T  22234982 ctatgaagcacggatacggacacggacac 22234954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 29205404 - 29205436
Alignment:
Q  50 taatctatgaagcacggatacggacacggacac 82  Q
    |||||||||||||||||||||||||| ||||||    
T  29205404 taatctatgaagcacggatacggacatggacac 29205436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 6471998 - 6471903
Alignment:
Q  52 atctatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    ||||||||||||||| ||| ||||| || |||||||| || | |||||||||| |  ||||||||| || |||||| |||||||||||||||||||    
T  6471998 atctatgaagcacggttacagacacagaaaccggacatgacacggacactgacacggctaataatttgagaaaatcacataattcagtgtaattat 6471903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 15382421 - 15382471
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||||||||||||||||||||||||||||||||||| | ||||| ||||    
T  15382421 ctatgaagcacggatacggacacggacaccggacacgacacggacaatgac 15382471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 21522694 - 21522744
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    ||||||||||||||||||||||||| |||||||||||| | ||||||||||    
T  21522694 ctatgaagcacggatacggacacggtcaccggacacgacacggacactgac 21522744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 21533260 - 21533310
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    ||||||||||||||||||||||||| |||||||||||| | ||||||||||    
T  21533260 ctatgaagcacggatacggacacggtcaccggacacgacacggacactgac 21533310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 32767049 - 32766957
Alignment:
Q  55 tatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    ||||||||||||||||  |||| ||||| |||||||| | |||||| ||| |  ||||||||| || ||||||||| |||||| |||||||||    
T  32767049 tatgaagcacggatacaaacacagacactggacacgacacggacaccgacaccgctaataatttgagaaaatcgcacaattcaatgtaattat 32766957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 13287509 - 13287417
Alignment:
Q  59 aagcacggatacggacacggacaccggacacgataaggacact--------gactcaactaataattagaaaaaatcgcataattcagtgtaa 143  Q
    ||||||||||||||||||||||||||||||||| | |||||||        ||| ||  |||||||| ||||||||| |||||||||||||||    
T  13287509 aagcacggatacggacacggacaccggacacgacacggacactaacacgtcgacacagataataatttgaaaaaatcacataattcagtgtaa 13287417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 23016107 - 23016060
Alignment:
Q  53 tctatgaagcacggatacggacacggacaccggacacgataaggacac 100  Q
    |||||||||||||||||||||||||||| |||||||||| | ||||||    
T  23016107 tctatgaagcacggatacggacacggactccggacacgacacggacac 23016060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 211
Target Start/End: Original strand, 6770487 - 6770662
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataagg--------acactgactcaactaataattagaaaaaatcgcataattcagtgtaatt 145  Q
    |||||||||||||||||||| |||||||||| ||| || | ||        |||||||| ||||||||||||  | |||||| |||||||||||||| ||    
T  6770487 ctatgaagcacggatacggatacggacaccgaacatgacacggacactgacacactgacacaactaataatttaagaaaatcacataattcagtgtactt 6770586  T
Q  146 atgtttc-gtgtcggacaag---------ctgatacacgcctaattcgaggagtgttcgtgcgtcataggttgcaa 211  Q
    |||| || |||||||||| |         ||| |||||||||||| ||| |||||| ||||| |||||||||||||    
T  6770587 atgtgtcagtgtcggacacgacacatgtcctggtacacgcctaatccgaagagtgtccgtgcttcataggttgcaa 6770662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 20683324 - 20683362
Alignment:
Q  53 tctatgaagcacggatacggacacggacaccggacacga 91  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  20683324 tctataaagcacggatacggacacggacaccggacacga 20683362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 34276801 - 34276838
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacga 91  Q
    |||||||||||||||||||||||||| |||||||||||    
T  34276801 ctatgaagcacggatacggacacggataccggacacga 34276838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 41995417 - 41995515
Alignment:
Q  56 atgaagcacggatacggacacggacaccggacacgataaggacact--------gactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||||||||||||||||||||| ||| |||| |  ||||||        ||| |||||||||||| ||||||||| ||||||||| ||||||||    
T  41995417 atgaagcacggatacggacacggacactggatacgacacagacactgacacgccgacacaactaataattcgaaaaaatcacataattcaatgtaatta 41995515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 88
Target Start/End: Original strand, 8419985 - 8420016
Alignment:
Q  57 tgaagcacggatacggacacggacaccggaca 88  Q
    ||||||||||||||||||||||||||||||||    
T  8419985 tgaagcacggatacggacacggacaccggaca 8420016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 6326412 - 6326362
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||||||| ||||| ||||||||| ||||||||||| | ||||||||||    
T  6326412 ctatgaagcatggataaggacacggataccggacacgacacggacactgac 6326362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 6401442 - 6401488
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacac 100  Q
    ||||||||||||||||| |||||||||||||||| ||| | ||||||    
T  6401442 ctatgaagcacggatacagacacggacaccggacgcgacacggacac 6401488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 21191158 - 21191071
Alignment:
Q  67 atacggacacggacaccggacacgataaggacactgact--------caactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||||| |||||||||||||| | ||||||||||         || ||||||||| ||||||||| ||||||||||||||||||    
T  21191158 atacggacactgacaccggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 21191071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 25351133 - 25351167
Alignment:
Q  56 atgaagcacggatacggacacggacaccggacacg 90  Q
    |||||||||||||||||||| ||||||||||||||    
T  25351133 atgaagcacggatacggacaaggacaccggacacg 25351167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 39698539 - 39698585
Alignment:
Q  100 ctgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||| || ||||||||| ||||||||| ||||||||||||||||||    
T  39698539 ctgacacagctaataatttgaaaaaatcacataattcagtgtaatta 39698585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 40131616 - 40131666
Alignment:
Q  97 acactgactcaactaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    |||||||  |||||||||||| ||||||||| ||||||||||| |||||||    
T  40131616 acactgatacaactaataatttgaaaaaatcacataattcagtttaattat 40131666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 82
Target Start/End: Original strand, 43001760 - 43001790
Alignment:
Q  52 atctatgaagcacggatacggacacggacac 82  Q
    |||||||||||||||||||||||||||||||    
T  43001760 atctatgaagcacggatacggacacggacac 43001790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 6247629 - 6247666
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  6247629 ctaataatttgaaaaaatcacataattcagtgtaatta 6247666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 15405119 - 15405070
Alignment:
Q  97 acactgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||| |||||||||||| |||||||||  |||||||| ||||||||    
T  15405119 acactgacacaactaataatttgaaaaaatcatataattcaatgtaatta 15405070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 21351969 - 21351920
Alignment:
Q  97 acactgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||| ||| |||||||||||| |||||| || ||||||||||||||||||    
T  21351969 acaccgacacaactaataattggaaaaagtcacataattcagtgtaatta 21351920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 21576797 - 21576760
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  21576797 ctaataatttgaaaaaatcacataattcagtgtaatta 21576760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 32426967 - 32426934
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggac 87  Q
    |||||||||| |||||||||||||||||||||||    
T  32426967 ctatgaagcatggatacggacacggacaccggac 32426934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 28862262 - 28862298
Alignment:
Q  55 tatgaagcacggatacggacacggacaccggacacga 91  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  28862262 tatgaagcacggatatggacacggacatcggacacga 28862298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 21479068 - 21479162
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggaca--ctgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||||| ||||||||||||||||||||||||||| |  ||||  | ||| || ||||||||| ||||||||| || |||||||||||||||    
T  21479068 ctatgaagcatggatacggacacggacaccggacacgacactgacacgccgacacagctaataatttgaaaaaatcacacaattcagtgtaatta 21479162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 14027959 - 14028052
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    |||||||||||||||||||||||||||||||||||||| | |||||| ||| || |||||  ||  | |||||| || ||| ||||||||||||    
T  14027959 ctatgaagcacggatacggacacggacaccggacacgacacggacaccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattat 14028052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 750734 - 750687
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacact 101  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||    
T  750734 ctatgaagcacggatacggacacggacaccggacacgacacggacact 750687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 10335402 - 10335351
Alignment:
Q  53 tctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    ||||||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  10335402 tctatgaagcacggatacgaacacggacaccggacacgacacggacactgac 10335351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 11313909 - 11313814
Alignment:
Q  52 atctatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    |||||||||||||||||||||||||| |||| ||| |||| |  ||||| ||| |  ||||||||| || |||||| ||||||| |||||||||||    
T  11313909 atctatgaagcacggatacggacacgaacacgggagacgaaacagacaccgacactgctaataatttgagaaaatcacataatttagtgtaattat 11313814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 3164142 - 3164043
Alignment:
Q  52 atctatgaagcacggatacggacacggacaccggacacgataaggacact--------gactcaactaataattagaaaaaatcgcataattcagtgtaa 143  Q
    ||||||||||||||||||| |||||||||||||||||||| | ||||| |        ||| || ||||||||| ||||||||| |||||||||||||||    
T  3164142 atctatgaagcacggatacagacacggacaccggacacgacacggacaatggcacgtcgacacagctaataatttgaaaaaatcacataattcagtgtaa 3164043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 14747511 - 14747606
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggaca--ctgactcaactaataattag-aaaaaatcgcataattcagtgtaatta 146  Q
    |||||||||||||||||||| ||||||||||||||||| |  ||||  | ||| || ||||||||| | |||||||| ||||||| ||||||||||    
T  14747511 ctatgaagcacggatacggatacggacaccggacacgacactgacacgccgacacagctaataatttgaaaaaaatcacataatttagtgtaatta 14747606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 10318156 - 10318109
Alignment:
Q  53 tctatgaagcacggatacggacacggacaccggacacgataaggacac 100  Q
    ||||||||||||||||||| ||||||||||||||||||| | ||||||    
T  10318156 tctatgaagcacggatacgaacacggacaccggacacgacacggacac 10318109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 7171446 - 7171496
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    ||||||||||||||||||||||| |||||||||||||| | ||| ||||||    
T  7171446 ctatgaagcacggatacggacacagacaccggacacgacacggatactgac 7171496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 15796409 - 15796359
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||| ||||    
T  15796409 ctatgaagcacggatatggacacggacaccggacacgacacggacaatgac 15796359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 17568784 - 17568750
Alignment:
Q  55 tatgaagcacggatacggacacggacaccggacac 89  Q
    |||||||||||||||||||||||||||||||||||    
T  17568784 tatgaagcacggatacggacacggacaccggacac 17568750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 24205156 - 24205106
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||||||||||| || |||||||||||||||||||| | ||||||||||    
T  24205156 ctatgaagcacggacacagacacggacaccggacacgacacggacactgac 24205106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 35994852 - 35994802
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||||||||||||||||||| ||||||||||||||| | ||||| ||||    
T  35994852 ctatgaagcacggatacggacatggacaccggacacgacatggacaatgac 35994802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 13845621 - 13845584
Alignment:
Q  47 ttgtaatctatgaagcacggatacggacacggacaccg 84  Q
    |||| |||||||||||||||||||||||||||||||||    
T  13845621 ttgtcatctatgaagcacggatacggacacggacaccg 13845584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 16000130 - 16000081
Alignment:
Q  55 tatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||||||||||||||||||||||||||| |||||| |  |||||||||    
T  16000130 tatgaagcacggatacggacacggacaccgaacacgacacagacactgac 16000081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 1509531 - 1509583
Alignment:
Q  94 aggacactgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||||| || ||||||||| ||||||||| ||||||| ||||||||||    
T  1509531 aggacactgacacagctaataatttgaaaaaatcacataatttagtgtaatta 1509583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 34910321 - 34910361
Alignment:
Q  106 caactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  34910321 caactaataatttgaaaaaatcacataattcagtgtaatta 34910361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 51206419 - 51206371
Alignment:
Q  95 ggacactgactcaactaataattagaaaaaatcgcataattcagtgtaa 143  Q
    |||||||||| || ||||||||| ||||||||| |||||||||||||||    
T  51206419 ggacactgacacagctaataatttgaaaaaatcacataattcagtgtaa 51206371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 51581928 - 51581880
Alignment:
Q  393 aaccttctgaggaactgtgtcatcaacatgcacaaaatactgcctgaaa 441  Q
    ||||||||||||||| |||||||| | |||||| |||||||||||||||    
T  51581928 aaccttctgaggaacggtgtcatccatatgcacgaaatactgcctgaaa 51581880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 33313442 - 33313477
Alignment:
Q  55 tatgaagcacggatacggacacggacaccggacacg 90  Q
    ||||||||||||||| ||||||||||||||||||||    
T  33313442 tatgaagcacggatatggacacggacaccggacacg 33313477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 52369737 - 52369776
Alignment:
Q  52 atctatgaagcacggatacggacacggacaccggacacga 91  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  52369737 atctatgaagcacggacacagacacggacaccggacacga 52369776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 3618858 - 3618928
Alignment:
Q  79 acaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaattatgt 149  Q
    ||||||||||| ||| |||||||||| |  ||||||||| || |||||  |||||||||| ||||||||||    
T  3618858 acaccggacacaatacggacactgacaccgctaataatttgagaaaattccataattcagcgtaattatgt 3618928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 7928457 - 7928495
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  7928457 ctaataatttgaaaaaatcacataattcagtgtaattat 7928495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 10954956 - 10954994
Alignment:
Q  106 caactaataattagaaaaaatcgcataattcagtgtaat 144  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  10954956 caactaataatttgaaaaaatcacataattcagtgtaat 10954994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 147
Target Start/End: Complemental strand, 25948939 - 25948901
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  25948939 ctaataatttgaaaaaatcacataattcagtgtaattat 25948901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 26508108 - 26508154
Alignment:
Q  100 ctgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||| || ||||||||| ||||||||| ||||||||||||||||||    
T  26508108 ctgacacagctaataatttgaaaaaatcacataattcagtgtaatta 26508154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 4987343 - 4987306
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  4987343 ctaataatttgaaaaaatcacataattcagtgtaatta 4987306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 15812934 - 15812897
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacga 91  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  15812934 ctatgaagaacggatatggacacggacaccggacacga 15812897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 15864789 - 15864826
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacga 91  Q
    |||||||||||||| || ||||||||||||||||||||    
T  15864789 ctatgaagcacggacacagacacggacaccggacacga 15864826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 28918008 - 28918045
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  28918008 ctaataatttgaaaaaatcacataattcagtgtaatta 28918045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 38731162 - 38731199
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacga 91  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  38731162 ctatgaagcacggatgcggacacggacaacggacacga 38731199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 40052397 - 40052434
Alignment:
Q  170 acacgcctaattcgaggagtgttcgtgcgtcataggtt 207  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  40052397 acacgcctaatccgaggagtgttcgtgcttcataggtt 40052434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 11251985 - 11252025
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaattatgt 149  Q
    ||||||||| || |||||| |||||||||||||||||||||    
T  11251985 ctaataatttgagaaaatcacataattcagtgtaattatgt 11252025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 14209117 - 14209157
Alignment:
Q  106 caactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||||||  |||||||| ||||||||||||||||||    
T  14209117 caactaataattttaaaaaatcacataattcagtgtaatta 14209157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 14979188 - 14979224
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaatt 145  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  14979188 ctaataatttgaaaaaatcacataattcagtgtaatt 14979224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 23870650 - 23870622
Alignment:
Q  54 ctatgaagcacggatacggacacggacac 82  Q
    |||||||||||||||||||||||||||||    
T  23870650 ctatgaagcacggatacggacacggacac 23870622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 82
Target Start/End: Original strand, 45451523 - 45451551
Alignment:
Q  54 ctatgaagcacggatacggacacggacac 82  Q
    |||||||||||||||||||||||||||||    
T  45451523 ctatgaagcacggatacggacacggacac 45451551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 55401079 - 55401119
Alignment:
Q  106 caactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||||||| ||||||||| ||||||| ||||||||||    
T  55401079 caactaataatttgaaaaaatcacataatttagtgtaatta 55401119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 16642082 - 16642018
Alignment:
Q  53 tctatgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataatt 117  Q
    ||||||||||||||||||||| |||||| |||||||||| |  ||||||||| ||||||||||||    
T  16642082 tctatgaagcacggatacggatacggacgccggacacgacacagacactgacacaactaataatt 16642018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 24413676 - 24413625
Alignment:
Q  53 tctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    ||||||||||||||||||||||||||||||| ||||||| | ||||||||||    
T  24413676 tctatgaagcacggatacggacacggacaccagacacgacacggacactgac 24413625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 25566802 - 25566885
Alignment:
Q  63 acggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||  ||||| ||||||||||| || |  ||||||||| || ||||||||| ||||||||| ||||||||||||||||||    
T  25566802 acggatatagacacagacaccggacatgacacagacactgacacagctaataatttgaaaaaatcacataattcagtgtaatta 25566885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 926902 - 926853
Alignment:
Q  55 tatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    ||||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  926902 tatgaagcacggatacgaacacggacaccggacacgacacggacactgac 926853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 43737929 - 43737882
Alignment:
Q  53 tctatgaagcacggatacggacacggacaccggacacgataaggacac 100  Q
    |||||||||||||||||| |||||||||||||||||||| | ||||||    
T  43737929 tctatgaagcacggatacagacacggacaccggacacgacacggacac 43737882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 22651920 - 22651970
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||||| |||||||||||||| |||||||||||||| | ||||||||||    
T  22651920 ctatgaagtacggatacggacactgacaccggacacgacacggacactgac 22651970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 29510419 - 29510369
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    ||||||||||||||||| |||| ||||||||||||||| | ||||||||||    
T  29510419 ctatgaagcacggatactgacatggacaccggacacgacacggacactgac 29510369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 3951647 - 3951598
Alignment:
Q  51 aatctatgaagcacggatacggacacggacaccggacacgataaggacac 100  Q
    ||||||||||||||||||||||||||||||||| || |||| | ||||||    
T  3951647 aatctatgaagcacggatacggacacggacaccagatacgacacggacac 3951598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 8342939 - 8343016
Alignment:
Q  69 acggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||||||| ||||||||| |  ||||| |||  | ||||||||| ||||||||| ||||||| ||||||||||    
T  8342939 acggacacggacatcggacacgacactgacaccgacatagctaataatttgaaaaaatcacataatttagtgtaatta 8343016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 20785574 - 20785537
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacga 91  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  20785574 ctatgaagcacggatacggacacggacaccgtacacga 20785537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 4948657 - 4948696
Alignment:
Q  107 aactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  4948657 aactaataatttgaaaaaatcacataattcagtgtaatta 4948696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 18964115 - 18964165
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    ||||| ||||| |||||||||||||||||| ||||||| | ||||||||||    
T  18964115 ctatgtagcacagatacggacacggacaccagacacgacacggacactgac 18964165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 2572171 - 2572134
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacga 91  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  2572171 ctatgaagcatggatacggacacggacactggacacga 2572134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 15816184 - 15816143
Alignment:
Q  106 caactaataattagaaaaaatcgcataattcagtgtaattat 147  Q
    |||||||||||| ||||||||| ||||||| |||||||||||    
T  15816184 caactaataatttgaaaaaatcacataatttagtgtaattat 15816143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 24857949 - 24857990
Alignment:
Q  50 taatctatgaagcacggatacggacacggacaccggacacga 91  Q
    |||| ||||||| ||||||||||||||| |||||||||||||    
T  24857949 taatttatgaagaacggatacggacacgaacaccggacacga 24857990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 5137518 - 5137490
Alignment:
Q  54 ctatgaagcacggatacggacacggacac 82  Q
    |||||||||||||||||||||||||||||    
T  5137518 ctatgaagcacggatacggacacggacac 5137490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 29447413 - 29447449
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacg 90  Q
    |||||||||||||||| |||||| |||||||||||||    
T  29447413 ctatgaagcacggatatggacacagacaccggacacg 29447449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 36450809 - 36450769
Alignment:
Q  106 caactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||||||| ||||||||| || |||||||||||||||    
T  36450809 caactaataatttgaaaaaatcacagaattcagtgtaatta 36450769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 36450851 - 36450823
Alignment:
Q  54 ctatgaagcacggatacggacacggacac 82  Q
    |||||||||||||||||||||||||||||    
T  36450851 ctatgaagcacggatacggacacggacac 36450823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 9842 - 9888
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacac 100  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||    
T  9842 ctatgaagcacggatacggacacggacaccggacacgacatggacac 9888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 8742 - 8792
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||||||| ||||||||||||||||||||||||||| | ||||||||||    
T  8742 ctatgaagcatggatacggacacggacaccggacacgacacggacactgac 8792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 46626 - 46726
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggaca--------ctgactcaactaataattagaaaaaatcgcataattcagtgtaatt 145  Q
    |||||||||||||||||||||||||||| ||||||||| | |||||        | ||| ||  |||||||| ||||||||| |||||||||||||||||    
T  46626 ctatgaagcacggatacggacacggacatcggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcacataattcagtgtaatt 46725  T
Q  146 a 146  Q
    |    
T  46726 a 46726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 130426 - 130476
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    |||||||||| ||||||||||||||||||||||||||| | ||||| ||||    
T  130426 ctatgaagcatggatacggacacggacaccggacacgacacggacaatgac 130476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 14534 - 14574
Alignment:
Q  106 caactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  14534 caactaataatttgaaaaaatcacataattcagtgtaatta 14574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 23367 - 23399
Alignment:
Q  50 taatctatgaagcacggatacggacacggacac 82  Q
    |||||||||||||||||||||||||||||||||    
T  23367 taatctatgaagcacggatacggacacggacac 23399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 63709 - 63741
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccgga 86  Q
    |||||||||||||||||||||||||||||||||    
T  63709 ctatgaagcacggatacggacacggacaccgga 63741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 575 - 528
Alignment:
Q  56 atgaagcacggatacggacacggacaccggacacgataaggacactga 103  Q
    ||||||||||||||||||||||||||||| |||||  | |||||||||    
T  575 atgaagcacggatacggacacggacaccgaacacgccacggacactga 528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 17851 - 17764
Alignment:
Q  56 atgaagcacggatacggacacggacaccggacacgataaggacactgactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||| ||| ||||| |||||||||| ||||||  ||||  || ||||| |||||||||||| ||||||||| ||||||| ||||||||||    
T  17851 atgaaacacagatacagacacggacatcggaca--ataac-acgctgacacaactaataatttgaaaaaatcacataatttagtgtaatta 17764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 7961 - 8054
Alignment:
Q  55 tatgaagcacggatacggacacggacaccggacacgataaggacact--gactcaactaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||| | ||||||| ||||| ||| |||||||||||  |||||   ||| |||||||||||| |||||||||  ||||| |||||||||||    
T  7961 tatgaagtatggatacgaacacgaacatcggacacgatacagacacgccgacacaactaataatttgaaaaaatcatataatacagtgtaatta 8054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 225383 - 225333
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    ||||||| |||||| || |||||||||||||||||||| | ||||||||||    
T  225383 ctatgaaacacggacacagacacggacaccggacacgacacggacactgac 225333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 20179 - 20216
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  20179 ctaataatttgaaaaaatcacataattcagtgtaatta 20216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 3969 - 3932
Alignment:
Q  54 ctatgaagcacggatacggacacggacaccggacacga 91  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  3969 ctatgaagcacggatatggacacggacaccagacacga 3932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 51818 - 51855
Alignment:
Q  109 ctaataattagaaaaaatcgcataattcagtgtaatta 146  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  51818 ctaataatttgaaaaaatcacataattcagtgtaatta 51855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 3262 - 3310
Alignment:
Q  56 atgaagcacggatacggacacggacaccggacacgataaggacactgac 104  Q
    ||||||||||||||  |||||||||||||||||||| | ||| ||||||    
T  3262 atgaagcacggatatagacacggacaccggacacgacacggatactgac 3310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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