View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6622_high_17 (Length: 352)
Name: NF6622_high_17
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6622_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 328
Target Start/End: Complemental strand, 42237291 - 42236970
Alignment:
| Q |
7 |
attaatcactgtttgatcaaacggtcataaaactttaacagatagcaaccgtattttaaataacatggaactgactgtaccatattatttgaacagagnn |
106 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42237291 |
attaatcactgtttgatcaaacggtcagaaaactataacagatagcaaccgtattttaaataacatggaactgactgtaccatattatttgaacagagaa |
42237192 |
T |
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| Q |
107 |
nnnnnnnnnnnnngatgaaaatgggtcccattaagtgtgacagaagttgcagaccctgcaagtttgaccgataataacccacacacaacacagcatccaa |
206 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42237191 |
aaaattaaaaaaagatgaaaatgggtcccattaagtgtgacagaaattgcagaccctgcaagtttgaccgataataacccacacacaacacagcatccaa |
42237092 |
T |
|
| Q |
207 |
aaactgttaataacaaaaatattactaataaaatatgnnnnnnntgttaacatagacaccagaaacattgttaaataagtaaaattattttcaaatttgt |
306 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42237091 |
aaactgttaataacaaaaatattactaataaaataatgaaaaaatgttaacatagacaccagaaacattgttaaataagtaaaattattttcaaatttgt |
42236992 |
T |
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| Q |
307 |
atagttaaatttttaaaaatgt |
328 |
Q |
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|||||||||||||||||||||| |
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| T |
42236991 |
atagttaaatttttaaaaatgt |
42236970 |
T |
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