View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6622_high_26 (Length: 248)

Name: NF6622_high_26
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6622_high_26
NF6622_high_26
[»] chr4 (5 HSPs)
chr4 (19-177)||(53731205-53731358)
chr4 (173-248)||(4881284-4881359)
chr4 (173-248)||(4923848-4923922)
chr4 (173-248)||(4904355-4904429)
chr4 (99-168)||(53730768-53730837)
[»] chr2 (2 HSPs)
chr2 (19-172)||(597119-597267)
chr2 (99-172)||(596679-596752)
[»] chr8 (2 HSPs)
chr8 (19-172)||(26936797-26936939)
chr8 (99-158)||(26937301-26937360)
[»] chr3 (2 HSPs)
chr3 (103-172)||(19341910-19341979)
chr3 (104-177)||(6776019-6776092)
[»] chr5 (1 HSPs)
chr5 (104-172)||(9363277-9363345)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 53731205 - 53731358
Alignment:
Q  19 gaagagaaggcaatggtgcgatagaaatttaaggtgattatcttattaattttaaatcaaaactttttcttttnnnnnnnggattatgtggcaaaatgtt 118  Q
    |||||||||||||||||||||||||||||||||||||      |||||||||| ||||||||| |||||||||       ||||||||||||||||||||    
T  53731205 gaagagaaggcaatggtgcgatagaaatttaaggtga-----ctattaatttttaatcaaaacattttcttttaaaaaaaggattatgtggcaaaatgtt 53731299  T
Q  119 attggctaactgtgtaaagttcttttacacaatcagtgcaccacaattaaactcatata 177  Q
    ||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53731300 attggttgactgtgtaaagttcttttacacagtcagtgcaccacaattaaactcatata 53731358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 4881284 - 4881359
Alignment:
Q  173 atataaataaattattctgcaaatcatcatacaaaatatatatgaagtctatcctgatcatgtgtaaaagttttat 248  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4881284 atataaataaattattgtgcaaatcatcatacaaaatatatatgaagtctatcctgatcatgtgtaaaagttttat 4881359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 4923848 - 4923922
Alignment:
Q  173 atataaataaattattctgcaaatcatcatacaaaatatatatgaagtctatcctgatcatgtgtaaaagttttat 248  Q
    |||||||||||||||| || ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  4923848 atataaataaattattgtggaaatcatcatacaaa-tatatatgaagtctatcttgatcatgtgtaaaagttttat 4923922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 4904355 - 4904429
Alignment:
Q  173 atataaataaattattctgcaaatcatcatacaaaatatatatgaagtctatcctgatcatgtgtaaaagttttat 248  Q
    ||||||| |||||||| || ||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||    
T  4904355 atataaacaaattattgtggaaatcatcatacaaa-tataaatgaagtctatcttgatcatgtgtaaaagttttat 4904429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 53730837 - 53730768
Alignment:
Q  99 ggattatgtggcaaaatgttattggctaactgtgtaaagttcttttacacaatcagtgcaccacaattaa 168  Q
    ||||||||| | ||||  ||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  53730837 ggattatgttgaaaaaatttattggctaactgtgtaaagttcttttacacggtcagtgcaccacaattaa 53730768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 597119 - 597267
Alignment:
Q  19 gaagagaaggcaatggtgcgatagaaatttaaggtgattatcttattaattttaaatcaaaactttttcttttnnnnnnnggattatgtggcaaaatgtt 118  Q
    ||||||||||||||||| |||||||||||||||||||||||     ||||||||||||||||| |||||||||       ||||||||||||||||||||    
T  597119 gaagagaaggcaatggtacgatagaaatttaaggtgattat-----taattttaaatcaaaacattttctttttaaaaaaggattatgtggcaaaatgtt 597213  T
Q  119 attggctaactgtgtaaagttcttttacacaatcagtgcaccacaattaaactc 172  Q
    |||| || ||||||||||||||||||||||| ||||||||||||||||||||||    
T  597214 attgactgactgtgtaaagttcttttacacagtcagtgcaccacaattaaactc 597267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 596752 - 596679
Alignment:
Q  99 ggattatgtggcaaaatgttattggctaactgtgtaaagttcttttacacaatcagtgcaccacaattaaactc 172  Q
    ||||||||||| ||||  ||||||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  596752 ggattatgtggaaaaaatttattggttaactgtgtaaagttcttttatacagtcagtgcaccataattaaactc 596679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 26936939 - 26936797
Alignment:
Q  19 gaagagaaggcaatggtgcgatagaaatttaaggtgattatcttattaattttaaatcaaaactttttcttttnnnnnnnggattatgtggcaaaatgtt 118  Q
    ||||||||||||||||||||||||||||||||||||| |||     ||||||||||      | |||||||||       ||||||||||||||||||||    
T  26936939 gaagagaaggcaatggtgcgatagaaatttaaggtgactat-----taattttaaa------cattttcttttaaaaaaaggattatgtggcaaaatgtt 26936851  T
Q  119 attggctaactgtgtaaagttcttttacacaatcagtgcaccacaattaaactc 172  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  26936850 attggctgactgtgtaaagttcttttacacagtcagtgcaccacaattaaactc 26936797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 26937301 - 26937360
Alignment:
Q  99 ggattatgtggcaaaatgttattggctaactgtgtaaagttcttttacacaatcagtgca 158  Q
    ||||||||||||||||| ||||||||| |||||||||| |||||||||||| | ||||||    
T  26937301 ggattatgtggcaaaattttattggctgactgtgtaaatttcttttacacagtgagtgca 26937360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 19341979 - 19341910
Alignment:
Q  103 tatgtggcaaaatgttattggctaactgtgtaaagttcttttacacaatcagtgcaccacaattaaactc 172  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  19341979 tatgtggcaaaatgttattggctgactgtgtaaagttcttttacacagtcagtgcaccacaattaaactc 19341910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 6776092 - 6776019
Alignment:
Q  104 atgtggcaaaatgttattggctaactgtgtaaagttcttttacacaatcagtgcaccacaattaaactcatata 177  Q
    |||||||| | ||||||||| | |||||||||| |   |||||||  ||||||||| |||||||||||||||||    
T  6776092 atgtggcagattgttattggatgactgtgtaaactatctttacactgtcagtgcactacaattaaactcatata 6776019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 9363277 - 9363345
Alignment:
Q  104 atgtggcaaaatgttattggctaactgtgtaaagttcttttacacaatcagtgcaccacaattaaactc 172  Q
    ||||||||||||  |||||| | |||||||||||| | |||||||  |||| |||| ||||||||||||    
T  9363277 atgtggcaaaattctattggatgactgtgtaaagtgcatttacactgtcagagcactacaattaaactc 9363345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University