View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6622_high_4 (Length: 817)

Name: NF6622_high_4
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6622_high_4
NF6622_high_4
[»] chr7 (1 HSPs)
chr7 (1-801)||(34884244-34885044)


Alignment Details
Target: chr7 (Bit Score: 769; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 1 - 801
Target Start/End: Original strand, 34884244 - 34885044
Alignment:
Q  1 ttgttatcgaattgtacctgcaatcgaatcatcccagtctgttttccttgattaagaggtcgctgaaccaagctttgccaataattcttaatagaaaacg 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34884244 ttgttatcgaattgtacctgcaatcgactcatcccagtctgttttccttgattaagaggtcgctgaaccaagctttgccaataactcttaatagaaaacg 34884343  T
Q  101 gctcaaaatgcaaaaaagccataagagaaaacaaatcataagaaccattctgaataggcgtccccgtaacagcccatctcctcttagcattcaaagcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34884344 gctcaaaatgcaaaaaagccataagagaaaacaaatcataagaaccattctgaataggcgtccccgtaacagcccatctcctcttagcattcaaagcaat 34884443  T
Q  201 aacagcctgactctgtcccgcattaacattcttcatcgtatgcgcctcatccaaaacaatcctcccccaccccaatttcttcacaggagtatctgaacac 300  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34884444 aacagcctgactctgtcccgcattaacattcttaattgtatgcgcctcatccaaaacaatcctcctccaccccaatttcttcacaggagtatctgaacac 34884543  T
Q  301 cgcaactcggctcccaatgtagcataagtagtcaacacaatatcatatttcctcaactcctcagcatcttgagtcctcctatcaccatagtacatataaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34884544 cgcaactcggctcccaatgtagcataagtagtcaacacaatatcatatttcctcaactcctcagcatcttgagtcctcctatcaccatagtacatataaa 34884643  T
Q  401 ccttcaacgtgccgcggttagtatgttcctccaactgagttatccacgtcgaaatcacagaaggaggacacacaatcaatgtaccatctgtctcactctc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34884644 ccttcaacgtgccgcggttagtatgttcctccaactgagttatccacgtcgaaatcacagaaggaggacacacaatcaatgtaccatttgtctcactctc 34884743  T
Q  501 caccctctctacactactcctacctcttttcttcccacttttcattttcattttatcataactaatcaaagataacaaagttaaagtcttccctaatccc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34884744 caccctctctacactactcctacctcttttcttcccacttttcattttcattttatcataactaatcaaagataacaaagttaaagtcttccctaatccc 34884843  T
Q  601 atcccatcggcgaatatccctccccgaagaggctccggtcgcgcattagtttgataattcgtcaacacattgacgaaattccccactttctcctcccaaa 700  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34884844 atcccatctgcgaatatccctccccgaagaggctccggtcgcgcattagtttgataattcgtcaacacattgacgaaattccccactttctcctcccaaa 34884943  T
Q  701 acggcggtaaatcatgggtactttcgcgatgataaagccatcccagtgcttctttttggtgctgcagaagctctgatttgataatgctagaaggagggtt 800  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34884944 acggcggtaaatcttgggtactttcgcgatgataaagccatcccagtgcttctttttggtgctgcagaagctctgatttgataatgctagaaggagggtt 34885043  T
Q  801 t 801  Q
    |    
T  34885044 t 34885044  T

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