View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6622_high_9 (Length: 509)
Name: NF6622_high_9
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6622_high_9 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 44285886 - 44285603
Alignment:
| Q |
1 |
gctttagcactcaatctgtctctgttgctgcttcccggtaacattgatcaagaaatttacgggcggaaccttcctttaagtctatcgagtgcctgacttc |
100 |
Q |
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| T |
44285886 |
gctttagtactcaatccatctctgttgctgcttcccggtaacattgatcaatcaatttacgg-cggaatcttcctttaagtcaatcgagtgcctgacttc |
44285788 |
T |
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| Q |
101 |
tctattgatctgaccggctcgattgagacagagagtaaaggtgcgaatcggctaaaaggctgagtccgagactgggagaagaactagcaagaaatgcaga |
200 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || |
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| T |
44285787 |
tctattgatctgaccgaattgattgagacagagagtaaaggtgcgaatcggctaaaaggtcgagtccgagattgggagaagaactagcaagaaatgccga |
44285688 |
T |
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| Q |
201 |
cttcgctccgcacctttaggtaaagatccccattgtccaatcttcctttaatggatatattcttaaatgtaacttccggtaagaa |
285 |
Q |
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| T |
44285687 |
atttgctccgcatcgttaggtaaagatccccattggccaatcttcctttaatggatatattcttcaatgtaacttccggtaagaa |
44285603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 44070127 - 44070410
Alignment:
| Q |
1 |
gctttagcactcaatctgtctctgttgctgcttcccggtaacattgatcaagaaatttacgggcggaaccttcctttaagtctatcgagtgcctgacttc |
100 |
Q |
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||||||| ||||||||||||||||||||||||||| || ||||| ||||| |||| |||| ||||||||||||||||||| ||| ||||||||||||| |
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| T |
44070127 |
gctttagtactcaatctgtctctgttgctgcttcctggcaacatcaatcaatcaattaacgg-cggaaccttcctttaagtcaatcaagtgcctgacttc |
44070225 |
T |
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| Q |
101 |
tctattgatctgaccggctcgattgagacagagagtaaaggtgcgaatcggctaaaaggctgagtccgagactgggagaagaactagcaagaaatgcaga |
200 |
Q |
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| T |
44070226 |
tctattgatctgaccggctagattgagacagagagtaaaggtgcaaaccggctaaacggctgagtccgagattgggagaagaactagcaagaaatgccga |
44070325 |
T |
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| Q |
201 |
cttcgctccgcacctttaggtaaagatccccattgtccaatcttcctttaatggatatattcttaaatgtaacttccggtaagaa |
285 |
Q |
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| T |
44070326 |
attcgctccgcattgtaaggtaaagatctccattgtccaatcttgctttaatggatatattcttcaatgtaacttctggtaagaa |
44070410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 331 - 496
Target Start/End: Original strand, 49237921 - 49238086
Alignment:
| Q |
331 |
cagactgcctctttctagatagattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgc |
430 |
Q |
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| T |
49237921 |
cagactgcctatttctagatagattctatggatgatgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccaatgcatgtcgtac |
49238020 |
T |
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| Q |
431 |
cttgcaagattgagatatcaaggctggtaccaaagcaaagagaagaataagaatctaatctctgct |
496 |
Q |
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| T |
49238021 |
cttgcaagattgagatatcaaggctggtaccaaagcaaagagaagaataagaatctaatctctgct |
49238086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 351 - 496
Target Start/End: Complemental strand, 6329 - 6184
Alignment:
| Q |
351 |
agattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgccttgcaagattgagatatca |
450 |
Q |
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| T |
6329 |
agattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgccttgcaagattgagatatca |
6230 |
T |
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| Q |
451 |
aggctggtaccaaagcaaagagaagaataagaatctaatctctgct |
496 |
Q |
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| T |
6229 |
aggctggtaccaaagcaaagagaagaataagaatctaatctctgct |
6184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 16443750 - 16443843
Alignment:
| Q |
1 |
gctttagcactcaatctgtctctgttgctgcttcccggtaacattgatcaagaaatttacgggcggaaccttcctttaagtctatcgagtgcctg |
95 |
Q |
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||||||| ||||||||||||||||||||||||||| || ||||| ||||| |||| || ||||||||||||||||||||| ||| |||||||| |
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| T |
16443750 |
gctttagtactcaatctgtctctgttgctgcttcctggcaacatcaatcaatcaattaac-ggcggaaccttcctttaagtcaatcaagtgcctg |
16443843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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