View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6622_low_1 (Length: 1010)
Name: NF6622_low_1
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6622_low_1 |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: scaffold0023 (Bit Score: 693; Significance: 0; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 141 - 996
Target Start/End: Original strand, 114825 - 115687
Alignment:
| Q |
141 |
gtaactatatataacagaatgaaacagatgttctatgttcagtttcatggtttgagtatttttaagataaaataacatcatatttaaattattagaagga |
240 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
114825 |
gtaactatatataacagaatgaaacagatgttctacgttcagtttcatggtttgagtatttttaagataaaataacatcatatttaaattattagaagga |
114924 |
T |
|
| Q |
241 |
taatcaaaggattggatgccatcacgttctattatgtttttataatatctaaactacaaaacattactagatcatttattnnnnnnnnnnnnnnnnnnnt |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
114925 |
taatcaaaggattggatgccatcacgttctattatgtttttataatatctaaactacaaaacattactagatcatttattaaaaaaaaaaaaaaacaa-t |
115023 |
T |
|
| Q |
341 |
actagatcatatggtggttcgatgcaagggtgatttgaaannnnnnngtgagctaatttttcttttatggcaaaatatagaactatacctaaatatgaaa |
440 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||| ||||||||||||||| ||| |
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| T |
115024 |
actagatcatatggtggttcgatgcaagggtgatttgaaatttttttgtgagctaatttttctttaatggcaaaaaatagcactatacctaaatatcaaa |
115123 |
T |
|
| Q |
441 |
aaa-gaaactataaacggtacaaaaccctgacaaaaggggtttgaattgtgaatctttgaaatttttgctctttctcaaccttgagaagatgttcttatc |
539 |
Q |
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||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115124 |
aaaagaaacaataaacggtactaaaccctgacaaaaggggtttgaattgtgaatctttgaaatttttgctctttctcaaccttgagaagatgttcttatc |
115223 |
T |
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| Q |
540 |
tgatgaa--------tgaagtatgtatcaaaatatttgatacaataagaaattggattattgttcttgcttctcaactattaaatgaaggagttactaga |
631 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115224 |
tgatgatctgaattctgaagtatgtatcaaaatatttgatacaataagaaattggattattgttcttgcttctcaactattaaatgaaggagttactaga |
115323 |
T |
|
| Q |
632 |
tagagaagacggcgtaaagaagttatactagtttaccctaattttgctagtctagtccccactgactatgatattttctagtatagtgtatacgataccc |
731 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
115324 |
tagacaagacggcgtaaagaagttatactagtttaccctaattttgctagtctagtccccactgactatgagattttctagtatagtgtatacgataccc |
115423 |
T |
|
| Q |
732 |
tttcagattctatacactatctcttcttttttgtctacccgaacttacaagtttgaatagtgaagctttacagttgaataaaaaatgatctttttctcta |
831 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115424 |
tttcagattctatacactatctcttcttttttgtctacccgaacttacaagtttgaatagtgaagctttacagttgaataaaaaatgatctttttctcta |
115523 |
T |
|
| Q |
832 |
taatttcgatttaataacattaagctgaatctgaccttttctaatacattgtaacatatgttccaaaaatacagtggaggcttgaatgttgatggtctaa |
931 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115524 |
taatttcgatttaataacattaagctgaaactgaccttttctaatacattgtaacatatgttccaaaaatacagtggaggcttgaatgttgatggtctaa |
115623 |
T |
|
| Q |
932 |
tttagggcaagtgcacacaaatcgtttaataagtaataaagtgtaagtagtaccgtattcacagg |
996 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115624 |
ttta-ggcaagtgcacacaaatcgtttaataagtaataaagtgtaagtagtaccgtattcacagg |
115687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 7e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 16456098 - 16456217
Alignment:
| Q |
21 |
catacaccaacactgccacctcatcattccttcccttttcctcttttcctagtataaactctccatatcttaggtttgggcccatagtcacagcccattt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16456098 |
catacaccaacactgccacctcatcattccttcccttttcctcttttcctagtataaactctccatatcttaggtttgggcccatagtcacagcccattt |
16456197 |
T |
|
| Q |
121 |
cctcattcacattcctatca |
140 |
Q |
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|||||||||||||||||||| |
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| T |
16456198 |
cctcattcacattcctatca |
16456217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 616
Target Start/End: Original strand, 33699582 - 33699684
Alignment:
| Q |
517 |
aaccttgagaagatgttcttatctgatgaa-tgaagtatgtatcaaaata--tttgatacaataagaaattggattattgttcttgcttctcaactatta |
613 |
Q |
| |
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|||||||||||||||||| || |||||| |||||| |||||||||||| |||||||||| |||| ||||| ||| ||| |||||||| |||||| | |
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| T |
33699582 |
aaccttgagaagatgttcagatatgatgatctgaagtttgtatcaaaataaatttgatacaagaagagattggtttaatgtgtttgcttctgaactatca |
33699681 |
T |
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| Q |
614 |
aat |
616 |
Q |
| |
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||| |
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| T |
33699682 |
aat |
33699684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 621109 - 621217
Alignment:
| Q |
32 |
actgccacctcatcattccttcccttttcctcttttcctagtataaactctccatatcttaggtttgggcccatagtcacagcccatttcctcattcaca |
131 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| || |||||| |||||||| |
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| T |
621109 |
actgacacctcatcattcctttccttttcctcttttcctagtgtagactctccatatcttaggtttgggtccatagtcaaggcaaatttccacattcaca |
621208 |
T |
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| Q |
132 |
ttcctatca |
140 |
Q |
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||||||||| |
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| T |
621209 |
ttcctatca |
621217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 499 - 602
Target Start/End: Original strand, 23947899 - 23948005
Alignment:
| Q |
499 |
aaatttttgctctttctcaaccttgagaagatgttcttatctgatga-atgaagtatgtatcaaaat--atttgatacaataagaaattggattattgtt |
595 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||||| || ||||||||| |||| |
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| T |
23947899 |
aaattttggctgcttctcaaccttgagaagatgttcagaactgatgacatgaagtatgtatcaaaatgaatttgatacaagaacaaattggatgattgaa |
23947998 |
T |
|
| Q |
596 |
cttgctt |
602 |
Q |
| |
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||||||| |
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| T |
23947999 |
cttgctt |
23948005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 549 - 674
Target Start/End: Original strand, 18603127 - 18603255
Alignment:
| Q |
549 |
aagtatgtatcaaaat--atttgatacaataagaaattggattattgttcttgcttctcaactattaaatgaaggagttactagatagagaagacggcgt |
646 |
Q |
| |
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|||||||||||||||| |||||||||||||| | ||| ||| ||| | ||||||||| |||||| |||| || |||||| |||| |||||| | | | |
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| T |
18603127 |
aagtatgtatcaaaatgaatttgatacaataaaagattagatgattttgcttgcttctgaactatcaaataaatgagttaagggataaagaagatgacat |
18603226 |
T |
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| Q |
647 |
-aaagaagttatactagtttaccctaatt |
674 |
Q |
| |
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||||||||||| ||| ||||| |||||| |
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| T |
18603227 |
aaaagaagttatcctattttacgctaatt |
18603255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 648 - 709
Target Start/End: Complemental strand, 26407712 - 26407651
Alignment:
| Q |
648 |
aagaagttatactagtttaccctaattttgctagtctagtccccactgactatgatattttc |
709 |
Q |
| |
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||||||||||||| ||| ||||||||| ||||||| |||||||||| |||| |||||||| |
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| T |
26407712 |
aagaagttatactcgttcaccctaattgggctagtccagtccccactaactacaatattttc |
26407651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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