View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6622_low_11 (Length: 578)
Name: NF6622_low_11
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6622_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 3810605 - 3810919
Alignment:
| Q |
1 |
ataaccaagatgggatacctactcaattaagttgtgattctgagctgattcaagaagtcacagattatcttcaaagttttaatgcatcattagcatgatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3810605 |
ataaccaagatgggatacctactcaattaagttgtgattctgaactgattcaagaagtcacatattatcttcaaagttttaatgcatcattagcatgatt |
3810704 |
T |
|
| Q |
101 |
acaatgagaatgcaatgcaagtgttttgtgcttgctttgttcacc-nnnnnnnnncctagtttcgaactttatagagctagtttgtcatttttaagggat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3810705 |
acaatgagaatgcaatgcaagtgttttgtgcttgctttgttcaccttttttttttcctagtttcgaactttatagagctagtttgtcatttttaagggat |
3810804 |
T |
|
| Q |
200 |
tttgttgttcttaggatttaatccttgctactttcattattaatgatattgttttcaccttnnnnnnnttgcagaagtgttactccaatttgatttatgc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
3810805 |
tttgttgttcttaggatttaatccttgctactttcattattaatgatattgttttcaccttaaaaaaattgcagaagtgttactccaatttgatttatac |
3810904 |
T |
|
| Q |
300 |
gcttcaagaatcaag |
314 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3810905 |
gcttcaagaatcaag |
3810919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 377 - 565
Target Start/End: Original strand, 3810982 - 3811170
Alignment:
| Q |
377 |
gaatgtggaacataacaggtacccttaaaaagaaaataaagacaataaattaaacgattaaccacaaattcattactcttaaaagggtttgttatcggtt |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3810982 |
gaatgtggaacataacaggtacccttaaaaagaaaataaaaacaataaattaaacgattaaccacaaattcattactcttaaaagggtttgttatcggtt |
3811081 |
T |
|
| Q |
477 |
gaagttatcaatatccatgaaaattacattaatgagctatattccattgaaacacatcttcagcacatgcataacctcacgcttcacag |
565 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3811082 |
gaagttatcaatatccatgaaaattacattaatgagctatattccattgaaacacatcttcagcacatgcataacctcacgcttcacag |
3811170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University