View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6622_low_12 (Length: 553)

Name: NF6622_low_12
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6622_low_12
NF6622_low_12
[»] chr2 (9 HSPs)
chr2 (17-548)||(10547654-10548192)
chr2 (191-257)||(16069268-16069332)
chr2 (191-252)||(20539693-20539752)
chr2 (172-250)||(24894349-24894427)
chr2 (191-252)||(30404869-30404928)
chr2 (196-261)||(31808063-31808126)
chr2 (19-68)||(6173552-6173601)
chr2 (19-68)||(31581831-31581880)
chr2 (19-68)||(34598908-34598957)
[»] chr1 (17 HSPs)
chr1 (194-266)||(13997867-13997937)
chr1 (191-266)||(52903230-52903303)
chr1 (191-258)||(5944262-5944329)
chr1 (191-259)||(16927197-16927263)
chr1 (191-258)||(398778-398843)
chr1 (199-259)||(48148049-48148108)
chr1 (201-259)||(34257922-34257978)
chr1 (190-259)||(2896133-2896200)
chr1 (191-260)||(5898277-5898344)
chr1 (196-257)||(9033021-9033081)
chr1 (19-68)||(18569422-18569471)
chr1 (19-68)||(28035059-28035108)
chr1 (19-68)||(30818457-30818506)
chr1 (20-68)||(3871329-3871377)
chr1 (193-249)||(31694732-31694788)
chr1 (19-67)||(34519054-34519102)
chr1 (195-258)||(36878446-36878507)
[»] chr7 (4 HSPs)
chr7 (191-266)||(5235967-5236040)
chr7 (19-60)||(26583638-26583679)
chr7 (191-266)||(22602715-22602788)
chr7 (191-266)||(26733285-26733358)
[»] chr3 (15 HSPs)
chr3 (196-266)||(40993340-40993409)
chr3 (190-256)||(11610501-11610565)
chr3 (178-251)||(23870579-23870650)
chr3 (197-261)||(4466610-4466672)
chr3 (20-68)||(2342405-2342453)
chr3 (18-68)||(4178478-4178528)
chr3 (191-252)||(15796313-15796372)
chr3 (177-258)||(25948900-25948979)
chr3 (197-266)||(38731205-38731272)
chr3 (30-68)||(46934556-46934594)
chr3 (19-68)||(4172480-4172529)
chr3 (19-68)||(25631639-25631688)
chr3 (19-68)||(38440689-38440738)
chr3 (19-68)||(50611529-50611578)
chr3 (191-258)||(8383238-8383303)
[»] chr8 (7 HSPs)
chr8 (178-261)||(34897053-34897134)
chr8 (196-266)||(4786343-4786411)
chr8 (196-261)||(2542434-2542499)
chr8 (196-250)||(41838144-41838196)
chr8 (191-252)||(4673444-4673503)
chr8 (196-252)||(29519181-29519235)
chr8 (19-68)||(42448140-42448189)
[»] chr6 (11 HSPs)
chr6 (201-261)||(8101074-8101134)
chr6 (191-266)||(3398600-3398672)
chr6 (191-259)||(9658860-9658926)
chr6 (19-62)||(4468481-4468524)
chr6 (186-256)||(24645455-24645525)
chr6 (191-260)||(677818-677885)
chr6 (202-252)||(8713971-8714020)
chr6 (196-252)||(5970127-5970181)
chr6 (19-68)||(8196519-8196568)
chr6 (19-68)||(12652856-12652905)
chr6 (198-258)||(17341677-17341735)
[»] chr5 (5 HSPs)
chr5 (191-261)||(42488063-42488131)
chr5 (191-249)||(15382458-15382516)
chr5 (19-69)||(20257806-20257856)
chr5 (218-258)||(25888306-25888346)
chr5 (178-261)||(39205848-39205929)
[»] scaffold0050 (1 HSPs)
scaffold0050 (186-258)||(70254-70324)
[»] scaffold0171 (2 HSPs)
scaffold0171 (191-258)||(23491-23557)
scaffold0171 (191-258)||(23401-23466)
[»] chr4 (15 HSPs)
chr4 (19-66)||(1531837-1531884)
chr4 (196-250)||(11651155-11651207)
chr4 (190-264)||(21539874-21539946)
chr4 (196-261)||(22440610-22440673)
chr4 (191-260)||(40179647-40179714)
chr4 (210-252)||(49041880-49041922)
chr4 (196-264)||(903908-903974)
chr4 (202-261)||(1213231-1213287)
chr4 (19-68)||(8009471-8009520)
chr4 (196-252)||(27706196-27706250)
chr4 (19-68)||(37188704-37188753)
chr4 (19-68)||(43444321-43444370)
chr4 (19-68)||(51317914-51317963)
chr4 (211-266)||(6863154-6863207)
chr4 (178-266)||(22234895-22234982)
[»] scaffold0136 (1 HSPs)
scaffold0136 (191-252)||(3868-3927)
[»] scaffold0022 (1 HSPs)
scaffold0022 (191-259)||(90824-90890)
[»] scaffold0019 (1 HSPs)
scaffold0019 (196-252)||(71709-71765)


Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 17 - 548
Target Start/End: Complemental strand, 10548192 - 10547654
Alignment:
Q  17 tgctagatatatatgaaaatcaataatttagattgaaatagagagagaaagaatattctaaaggttgaatatatattttctcataatttttcnnnnnnnn 116  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||            
T  10548192 tgctagatctatatgaaaatcaataatttagattgaaatagagagagaaagaatattctaaaggttgaatatatattttctcataatatttcaaaaaaaa 10548093  T
Q  117 ntatttctattttggttgtaaattaaaacttaagcttttaagtttcctaaagagtgacatactatgaagcacaaacaca-----------gacactgaca 205  Q
     |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||            ||||||||||    
T  10548092 -tatttctattttggttgtaaattaaaacttaagcttttaagtttccaaaagagtgacatactatgaagcacaaacactaatacgacacggacactgaca 10547994  T
Q  206 cgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcggctggaacacgtctaattcgagaattatccgtaattaaga 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| || |||    
T  10547993 cgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcggctggaacacgtctaatttgagaattgtccgtatttcaga 10547894  T
Q  306 ggtggcaggagacattggttactttttgtttggttgtaaaacaagtaatttgcaatgcgtgcaagtagagagcgaaacggggaaaagaaagtaatgcgag 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10547893 ggtggcaggagacattggttactttttgtttggttgtaaaacaagtaatttgcaatgcgtgcaagtagagagcgaaacggggaaaagaaagtaatgcgag 10547794  T
Q  406 atttaactgcaagggttttagccccgttctattctattctatcaaaaccctacaaatcaccatggctcgtttctctttgccgcgcctcctctactactac 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  10547793 atttaactgcaagggttttagccccgttctattctattctatcaaaaccctacaaatcaccatggctcgtttctctttgccgcgcctcctcta---ctac 10547697  T
Q  506 cactacaccgtctctcattcttcatcttcctccttactctctg 548  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10547696 cactacaccgtctctcattcttcatcttcctccttactctctg 10547654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 16069332 - 16069268
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttat 257  Q
    |||| |||||||||||| ||||||||||||||||||||  |||||||||||||||||||||| ||||    
T  16069332 acacggacactgacacgccgacaccgttaataatttaa--aaaaatcatataattcagtgtaattat 16069268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 20539752 - 20539693
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 252  Q
    |||| ||||||||||||||||||| | ||||||||| |  ||||||||||||||| ||||||    
T  20539752 acacggacactgacacgtcgacacagctaataatttga--aaaaatcatataatttagtgta 20539693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 24894349 - 24894427
Alignment:
Q  172 gacatactatgaagcacaaacaca--gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtg 250  Q
    |||| ||||||||||||  |||||  |||||||||||| |||||| | |||||||||||  |||||||| |||||||||||    
T  24894349 gacacactatgaagcacggacacacggacactgacacgccgacacagctaataatttaa--aaaaatcacataattcagtg 24894427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 30404928 - 30404869
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 252  Q
    |||| |||||||||||| |||||| ||||||||||| |  |||||||| |||||||||||||    
T  30404928 acacggacactgacacgccgacacggttaataatttga--aaaaatcacataattcagtgta 30404869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 31808063 - 31808126
Alignment:
Q  196 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgt 261  Q
    |||||||||||  |||||||| |||||||||||   ||||||| ||||||||||||| ||||||||    
T  31808063 gacactgacacaccgacaccgctaataatttaac--aaaatcacataattcagtgtaattatatgt 31808126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 6173601 - 6173552
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    |||||| ||| ||||||||| | ||||||||||||||||||||| |||||    
T  6173601 ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaaga 6173552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 31581831 - 31581880
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    |||||| ||| ||||||||| | ||||||||||||||||||||| |||||    
T  31581831 ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaaga 31581880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 34598957 - 34598908
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    |||||| ||| ||||||||| | ||||||||||||||||||||| |||||    
T  34598957 ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaaga 34598908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 13997867 - 13997937
Alignment:
Q  194 cagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 266  Q
    |||||||||||||| ||||||||||||| ||||||  |||||||| ||||||||||||| |||||||| ||||    
T  13997867 cagacactgacacgccgacaccgttaattatttaa--aaaaatcacataattcagtgtaattatatgtgtcgg 13997937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 52903230 - 52903303
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 266  Q
    |||| |||||| ||||| ||| ||||||||||||||||   ||||||||||||||||||||| |||||||| ||||    
T  52903230 acacggacactaacacgccgataccgttaataatttaat--aaaatcatataattcagtgtaattatatgtgtcgg 52903303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 5944262 - 5944329
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttata 258  Q
    ||||||||||||||||| || ||| | ||||||||| || |||||||| ||||||||||||| |||||    
T  5944262 acacagacactgacacgccgccacagctaataatttgaaaaaaaatcacataattcagtgtaattata 5944329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 16927263 - 16927197
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatat 259  Q
    |||||||||||||||||||| ||  | ||||||||| ||  ||||||||||||||||||||| ||||||    
T  16927263 acacagacactgacacgtcggcatagctaataatttgaa--aaaatcatataattcagtgtaattatat 16927197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 398843 - 398778
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttata 258  Q
    |||| |||||||||||| |||||||| ||||||||| |  |||||||| ||||||||||||| |||||    
T  398843 acacggacactgacacgccgacaccgctaataatttga--aaaaatcacataattcagtgtaattata 398778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 48148108 - 48148049
Alignment:
Q  199 actgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatat 259  Q
    ||||||| || ||||||| ||||||||| || |||||||||||||||||||||| ||||||    
T  48148108 actgacatgttgacaccgctaataattttaa-aaaaatcatataattcagtgtaattatat 48148049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 34257978 - 34257922
Alignment:
Q  201 tgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatat 259  Q
    ||||||||||||||||||||||||||||   ||||||| |||||| |||||| ||||||    
T  34257978 tgacacgtcgacaccgttaataatttaa--taaaatcacataatttagtgtaattatat 34257922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 2896200 - 2896133
Alignment:
Q  190 aacacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatat 259  Q
    ||||| |||||||||||| |||||||| ||||||||| |   ||||||| |||||||||||||| |||||    
T  2896200 aacacggacactgacacgccgacaccgctaataatttga--gaaaatcacataattcagtgtagctatat 2896133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 5898344 - 5898277
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatg 260  Q
    ||||||||||||| ||| |||||||| ||||||| | ||  ||||||| ||||||||||||| |||||||    
T  5898344 acacagacactgagacgccgacaccgctaataatctgaa--aaaatcacataattcagtgtaattatatg 5898277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 9033081 - 9033021
Alignment:
Q  196 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttat 257  Q
    |||||||||||||| |||||  ||||||||| || |||||||| ||||||||||||| ||||    
T  9033081 gacactgacacgtcaacaccactaataatttgaa-aaaaatcacataattcagtgtaattat 9033021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 18569422 - 18569471
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    |||||| ||| ||||||||| | ||||||||||||||||||||| |||||    
T  18569422 ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaaga 18569471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 28035108 - 28035059
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    |||||| ||| ||||||||| | ||||||||||||||||||||| |||||    
T  28035108 ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaaga 28035059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 30818457 - 30818506
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    |||||| ||| ||||||||| | ||||||||||||||||||||| |||||    
T  30818457 ctagatttatgtgaaaatcacttatttagattgaaatagagagaaaaaga 30818506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 3871377 - 3871329
Alignment:
Q  20 tagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    ||||| ||| ||||||||| | |||||||||||||| ||||||||||||    
T  3871377 tagatctatgtgaaaatcacttatttagattgaaattgagagagaaaga 3871329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 31694788 - 31694732
Alignment:
Q  193 acagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagt 249  Q
    ||||||||||| |||||||||  | ||||||||| || |||||||| ||||||||||    
T  31694788 acagacactgatacgtcgacatagctaataatttgaaaaaaaatcacataattcagt 31694732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 34519102 - 34519054
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaag 67  Q
    |||||| ||| ||||||||| | ||||||||||||||||||||| ||||    
T  34519102 ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaag 34519054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 258
Target Start/End: Original strand, 36878446 - 36878507
Alignment:
Q  195 agacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttata 258  Q
    ||||||||||||| |||||||| ||||||||| |   ||||||| ||||||||||||| |||||    
T  36878446 agacactgacacgccgacaccgctaataatttga--gaaaatcacataattcagtgtaattata 36878507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 5235967 - 5236040
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 266  Q
    |||||||||||||||||||||||||| |||||||||||   ||||| |||||||| |||||| |||||| ||||||    
T  5235967 acacagacactgacacgtcgacaccgctaataatttaa--gaaaattatataatttagtgtaattatatatatcgg 5236040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 26583679 - 26583638
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagaga 60  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  26583679 ctagatatatatgaaaatcacttatttagattgaaatagaga 26583638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 22602788 - 22602715
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 266  Q
    |||||| |||||||||| ||||||||| ||| |||| |   ||||||| ||||||||||||| |||||||| ||||    
T  22602788 acacaggcactgacacgccgacaccgtaaattatttgag--aaaatcacataattcagtgtaattatatgtgtcgg 22602715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 26733285 - 26733358
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 266  Q
    |||| ||||||||||||||||||||| ||||||||| |   ||||||| |||||||||| || ||| |||| ||||    
T  26733285 acacggacactgacacgtcgacaccgctaataatttga--caaaatcacataattcagtctaattaaatgtgtcgg 26733358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 40993409 - 40993340
Alignment:
Q  196 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 266  Q
    ||||| ||||| ||||||||| |||||||||||| |||||||| ||||||||||||| |||||||| ||||    
T  40993409 gacacggacacctcgacaccgctaataatttaaa-aaaaatcacataattcagtgtaattatatgtgtcgg 40993340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 11610501 - 11610565
Alignment:
Q  190 aacacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagtta 256  Q
    |||||||| ||||||||| | |||||| |||||||||||  |||||||| |||||||||||||||||    
T  11610501 aacacagatactgacacgccaacaccgctaataatttaa--aaaaatcacataattcagtgtagtta 11610565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 23870650 - 23870579
Alignment:
Q  178 ctatgaagcacaaacacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgt 251  Q
    |||||||||||  | || ||||| ||||||||||||||| ||||||||| |  |||||||||||||||||||||    
T  23870650 ctatgaagcacggatacggacacggacacgtcgacaccgctaataatttga--aaaaatcatataattcagtgt 23870579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 4466672 - 4466610
Alignment:
Q  197 acactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgt 261  Q
    ||||||||||  |||||||| |||||||||||   |||||||||||||||||||||| |||||||    
T  4466672 acactgacactccgacaccggtaataatttaag--aaaatcatataattcagtgtagctatatgt 4466610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 2342453 - 2342405
Alignment:
Q  20 tagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    ||||||||| ||||||||| | ||||||||||||||||||||| |||||    
T  2342453 tagatatatgtgaaaatcacttatttagattgaaatagagagaaaaaga 2342405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 4178528 - 4178478
Alignment:
Q  18 gctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    ||||||| ||| ||||||||| | ||||||||||||||||||||| |||||    
T  4178528 gctagatttatctgaaaatcacttatttagattgaaatagagagaaaaaga 4178478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 15796372 - 15796313
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 252  Q
    |||| |||| ||||||| |||||| ||||||||||| ||  |||||||||||||||||||||    
T  15796372 acacggacaatgacacgccgacacagttaataatttgaa--aaaatcatataattcagtgta 15796313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 25948979 - 25948900
Alignment:
Q  177 actatgaagcacaaacacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttata 258  Q
    ||||||||||||| |||| |||||||||| | ||| || | ||||||||| |  |||||||| ||||||||||||| |||||    
T  25948979 actatgaagcacagacacggacactgacatgccgatacggctaataatttga--aaaaatcacataattcagtgtaattata 25948900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 38731205 - 38731272
Alignment:
Q  197 acactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 266  Q
    |||| |||| ||||| |||| ||||||||| ||  ||||||| |||||||||||||||||||||| ||||    
T  38731205 acaccgacatgtcgataccgctaataattttaa--aaaatcacataattcagtgtagttatatgtgtcgg 38731272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 46934594 - 46934556
Alignment:
Q  30 tgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  46934594 tgaaaatcacttatttagattgaaatagagagagaaaga 46934556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 4172529 - 4172480
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    |||||| ||| ||||||||| | ||||||||||||||||||||| |||||    
T  4172529 ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaaga 4172480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 25631639 - 25631688
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    |||||| ||| ||||||||| | ||||||||||||||||||||| |||||    
T  25631639 ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaaga 25631688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 38440689 - 38440738
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    |||||| ||| ||||||||| | ||||||||||||||||||||| |||||    
T  38440689 ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaaga 38440738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 50611529 - 50611578
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    |||||| ||||||||||||| | ||||||||||||||| ||||| |||||    
T  50611529 ctagatctatatgaaaatcacttatttagattgaaatatagagaaaaaga 50611578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 8383238 - 8383303
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttata 258  Q
    |||| |||| ||||||| |||||||| ||||||||| |   ||||||||||||||||||||| |||||    
T  8383238 acacggacattgacacgccgacaccgctaataatttgag--aaaatcatataattcagtgtaattata 8383303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 34897053 - 34897134
Alignment:
Q  178 ctatgaagcacaaacacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgt 261  Q
    |||||||||||| | || ||||| ||||||||||||||| ||||||||| |   ||||||| ||||||||||||| ||||||||    
T  34897053 ctatgaagcacataaacggacacagacacgtcgacaccgctaataatttga--gaaaatcacataattcagtgtaattatatgt 34897134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 4786411 - 4786343
Alignment:
Q  196 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 266  Q
    |||||||||||| ||||||| ||||||||||||   ||||||| ||||||||||||| |||||||| ||||    
T  4786411 gacactgacacgccgacaccattaataatttaa--gaaaatcacataattcagtgtaattatatgtgtcgg 4786343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 2542434 - 2542499
Alignment:
Q  196 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgt 261  Q
    ||||| |||| ||||||| ||||||||||||||| |||||| | || |||||||||| ||||||||    
T  2542434 gacacggacatgtcgacatcgttaataatttaaaaaaaaattacatgattcagtgtaattatatgt 2542499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 41838196 - 41838144
Alignment:
Q  196 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtg 250  Q
    ||||||||||||||||||| | |||||||||||  |||||||| |||||||||||    
T  41838196 gacactgacacgtcgacacagctaataatttaa--aaaaatcacataattcagtg 41838144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 4673503 - 4673444
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 252  Q
    ||||||||||||||||| |||||| | ||||||||| |  |||||||||| |||||||||||    
T  4673503 acacagacactgacacgccgacacagataataatttga--aaaaatcataaaattcagtgta 4673444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 29519181 - 29519235
Alignment:
Q  196 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 252  Q
    |||||||||||||| |||||| ||||||||| |  ||||||||||||||||| ||||    
T  29519181 gacactgacacgtcaacaccgataataatttta--aaaaatcatataattcaatgta 29519235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 42448140 - 42448189
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    |||||| |||||| |||||| | ||||||||||||||||||||| |||||    
T  42448140 ctagatctatatgtaaatcacttatttagattgaaatagagagaaaaaga 42448189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 8101074 - 8101134
Alignment:
Q  201 tgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgt 261  Q
    |||||||||||| |  ||||||||||||| |||||||||||||| ||||||| ||||||||    
T  8101074 tgacacgtcgactctattaataatttaaaaaaaaatcatataatccagtgtaattatatgt 8101134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 3398600 - 3398672
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 266  Q
    |||| |||||||||||| |||||| | ||||||||| ||   |||||||||||||||||||| ||||| |||||||    
T  3398600 acacggacactgacacgccgacacagctaataatttgaa---aaatcatataattcagtgtaattataagtatcgg 3398672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 9658860 - 9658926
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatat 259  Q
    |||| |||||||||||| |||||||| |||||||||||   ||||||| ||||||||||||| ||||||    
T  9658860 acacggacactgacacgccgacaccgctaataatttaa--gaaaatcacataattcagtgtaattatat 9658926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 4468524 - 4468481
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagaga 62  Q
    |||||| ||||||||||||| | |||||||||||||||||||||    
T  4468524 ctagatctatatgaaaatcacttatttagattgaaatagagaga 4468481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 24645455 - 24645525
Alignment:
Q  186 cacaaaca-cagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagtta 256  Q
    |||||||| |||||||||||| |||||||| | ||||||||| || |||||||| |||||||||| ||||||    
T  24645455 cacaaacatcagacactgacatgtcgacacagctaataatttgaa-aaaaatcacataattcagtatagtta 24645525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 677818 - 677885
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatg 260  Q
    ||||||||||||||||| |||||| ||||||||||| |   |||||||||||||  |||||| |||||||    
T  677818 acacagacactgacacgccgacactgttaataatttga--gaaaatcatataatatagtgtatttatatg 677885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 8713971 - 8714020
Alignment:
Q  202 gacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 252  Q
    ||||||||||||| ||||||||||| || |||||||| |||||||||||||    
T  8713971 gacacgtcgacacagttaataatttgaa-aaaaatcacataattcagtgta 8714020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 5970181 - 5970127
Alignment:
Q  196 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 252  Q
    ||||| ||||||||||||| ||||||||||| |  |||||||| |||||||||||||    
T  5970181 gacacggacacgtcgacacagttaataatttga--aaaaatcacataattcagtgta 5970127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 8196519 - 8196568
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    |||||| ||| ||||||||| | ||||||||||||||||||||| |||||    
T  8196519 ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaaga 8196568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 12652905 - 12652856
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    |||||| ||| ||||||||| | ||||||||||||||||||||| |||||    
T  12652905 ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaaga 12652856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 17341735 - 17341677
Alignment:
Q  198 cactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttata 258  Q
    |||||||||| |||||||||||||||||| |   ||||||| ||||||||||||| |||||    
T  17341735 cactgacacgccgacaccgttaataatttga--taaaatcacataattcagtgtaattata 17341677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 42488131 - 42488063
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgt 261  Q
    |||||||||||||||||||||||||||| |||||||||   ||||| |||||||||| |||| ||| ||||    
T  42488131 acacagacactgacacgtcgacaccgttgataatttaa--taaaattatataattcaatgtaattacatgt 42488063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 15382458 - 15382516
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagt 249  Q
    |||| |||| ||||||| |||||| | ||||||||| || |||||||||||||||||||    
T  15382458 acacggacaatgacacgccgacacagctaataatttgaaaaaaaatcatataattcagt 15382516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 20257806 - 20257856
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaagaa 69  Q
    |||||| ||| ||||||||| | ||||||||||||||||||||| ||||||    
T  20257806 ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagaa 20257856  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 25888346 - 25888306
Alignment:
Q  218 taataatttaaataaaaatcatataattcagtgtagttata 258  Q
    ||||||||| || |||||||||||||||||||||| |||||    
T  25888346 taataattttaaaaaaaatcatataattcagtgtaattata 25888306  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 39205848 - 39205929
Alignment:
Q  178 ctatgaagcacaaacacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgt 261  Q
    |||||||||||  | |||||||| ||||||||||||| | ||||||||| |   ||||||||||||||  ||||| ||||||||    
T  39205848 ctatgaagcacggatacagacacggacacgtcgacactgctaataatttga--gaaaatcatataattaggtgtaattatatgt 39205929  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 70254 - 70324
Alignment:
Q  186 cacaaacacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttata 258  Q
    ||||||||||||||| |||| |||||||| ||||||||||| |  |||||| | ||||||||||||| |||||    
T  70254 cacaaacacagacacagacatgtcgacacagttaataatttga--aaaaataacataattcagtgtaattata 70324  T

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Target: scaffold0171 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 23491 - 23557
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttata 258  Q
    ||||| ||||||||||  |||||| |||||||| ||||| |||||||| ||||||||||||| |||||    
T  23491 acacatacactgacacaccgacacagttaataacttaaa-aaaaatcacataattcagtgtaattata 23557  T

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Target: scaffold0171; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 23401 - 23466
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttata 258  Q
    ||||||||||||||||| |||||| | |||||| | ||  |||||||| ||||||||||||| |||||    
T  23401 acacagacactgacacgccgacacagataataactcaa--aaaaatcacataattcagtgtaattata 23466  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 1531884 - 1531837
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaa 66  Q
    |||||| ||| ||||||||| | |||||||||||||||||||||||||    
T  1531884 ctagatctatgtgaaaatcacttatttagattgaaatagagagagaaa 1531837  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 11651207 - 11651155
Alignment:
Q  196 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtg 250  Q
    ||||||||||||||||||| | |||||||||||  |||||||| |||||||||||    
T  11651207 gacactgacacgtcgacacagctaataatttaa--aaaaatcacataattcagtg 11651155  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 21539946 - 21539874
Alignment:
Q  190 aacacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatc 264  Q
    |||| ||||||||||| | ||||||| ||||||||||||   |||||||||||||| |||||| |||||| ||||    
T  21539946 aacatagacactgacatgccgacaccattaataatttaa--gaaaatcatataatttagtgtaattatatatatc 21539874  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 22440673 - 22440610
Alignment:
Q  196 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgt 261  Q
    |||||||| || ||||||||||||||||||| |   ||||||| ||||||||||||| ||||||||    
T  22440673 gacactgatacatcgacaccgttaataatttga--gaaaatcacataattcagtgtaattatatgt 22440610  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 40179714 - 40179647
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatg 260  Q
    |||| ||||||||||||| |||||| |||||| ||| ||  ||||||| ||||||||||||| |||||||    
T  40179714 acacggacactgacacgttgacaccattaatagtttgaa--aaaatcacataattcagtgtaattatatg 40179647  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 49041922 - 49041880
Alignment:
Q  210 gacaccgttaataatttaaataaaaatcatataattcagtgta 252  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||    
T  49041922 gacacagttaataaattaaaaaaaaatcatataattcagtgta 49041880  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 903908 - 903974
Alignment:
Q  196 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatc 264  Q
    |||||||||||  || ||||||||||||||| |   ||||||| ||||||||||||| |||||||||||    
T  903908 gacactgacacaccggcaccgttaataatttgag--aaaatcacataattcagtgtaattatatgtatc 903974  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 1213287 - 1213231
Alignment:
Q  202 gacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgt 261  Q
    ||||||| ||||| ||||||||||||||   |||| ||||||||||||||| ||||||||    
T  1213287 gacacgttgacactgttaataatttaaa---aaattatataattcagtgtaattatatgt 1213231  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 8009471 - 8009520
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    |||||| ||| ||||||||| | ||||||||||||||||||||| |||||    
T  8009471 ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaaga 8009520  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 27706250 - 27706196
Alignment:
Q  196 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 252  Q
    |||||||||||||||||||  ||||||||||||  |||||||| |||||| ||||||    
T  27706250 gacactgacacgtcgacacaattaataatttaa--aaaaatcacataatttagtgta 27706196  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 37188704 - 37188753
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    |||||||||| ||||||||| | ||||||||||||||| ||||| |||||    
T  37188704 ctagatatatgtgaaaatcacttatttagattgaaatatagagaaaaaga 37188753  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 43444370 - 43444321
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    |||||||||| ||||||||| | ||||||||||||||| ||||| |||||    
T  43444370 ctagatatatgtgaaaatcacttatttagattgaaataaagagaaaaaga 43444321  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 51317963 - 51317914
Alignment:
Q  19 ctagatatatatgaaaatcaataatttagattgaaatagagagagaaaga 68  Q
    |||||| ||| ||||||||| | ||||||||||||||||||||| |||||    
T  51317963 ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaaga 51317914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 6863154 - 6863207
Alignment:
Q  211 acaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 266  Q
    |||||||||||||||| ||  ||||||||||||||| ||| | |||||||||||||    
T  6863154 acaccgttaataatttgaa--aaaatcatataattcggtgcaattatatgtatcgg 6863207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 22234982 - 22234895
Alignment:
Q  178 ctatgaagcacaaacacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 266  Q
    |||||||||||  | || ||||| |||||| |||||||| ||| ||||| || |||||||| ||||||||||||| || ||||| ||||    
T  22234982 ctatgaagcacggatacggacacggacacgccgacaccgctaaaaatttgaa-aaaaatcacataattcagtgtaattctatgtgtcgg 22234895  T

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Target: scaffold0136 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 3927 - 3868
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 252  Q
    ||||||||||||| | | |||||| |||||||||||||  |||||||| |||||||||||||    
T  3927 acacagacactgatatgccgacacggttaataatttaa--aaaaatcacataattcagtgta 3868  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 90824 - 90890
Alignment:
Q  191 acacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatat 259  Q
    ||||||||||||||||  | ||||| |||||||||| |   ||||||||||||||||||||| ||||||    
T  90824 acacagacactgacacaccaacaccattaataatttgag--aaaatcatataattcagtgtaattatat 90890  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 71709 - 71765
Alignment:
Q  196 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 252  Q
    |||||||||||| |||||| | ||||||||| || |||||||| | |||||||||||    
T  71709 gacactgacacgccgacacagctaataatttgaaaaaaaatcacacaattcagtgta 71765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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