View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6622_low_13 (Length: 536)

Name: NF6622_low_13
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6622_low_13
NF6622_low_13
[»] chr2 (3 HSPs)
chr2 (48-397)||(33136769-33137118)
chr2 (427-506)||(33136693-33136772)
chr2 (337-412)||(18558273-18558348)
[»] chr1 (11 HSPs)
chr1 (319-425)||(35265517-35265623)
chr1 (293-394)||(35228584-35228687)
chr1 (324-394)||(35295026-35295096)
chr1 (319-428)||(35273046-35273155)
chr1 (291-413)||(35477083-35477207)
chr1 (324-389)||(45534578-45534643)
chr1 (336-389)||(35193052-35193105)
chr1 (319-408)||(35203398-35203487)
chr1 (324-427)||(35222953-35223056)
chr1 (323-412)||(35146144-35146233)
chr1 (324-428)||(45526975-45527079)
[»] chr3 (3 HSPs)
chr3 (320-428)||(898643-898751)
chr3 (323-428)||(17663518-17663623)
chr3 (323-428)||(19246173-19246278)


Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 48 - 397
Target Start/End: Complemental strand, 33137118 - 33136769
Alignment:
Q  48 ggtgtgtaagcaagccaaacccaactgaccctaaaccagaaaaccctttctagcagccactaaccactaagacggtctacaaataacaaattaaagagca 147  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33137118 ggtgtgcaagcaagccaaacccaactgaccctaaaccagaaaaccctttctagcagctactaaccactaagacggtctacaaataacaaattaaagagca 33137019  T
Q  148 aaaataactacggaaaaactggtatagcagacaaaagcgacacaaacgaaaatacaagactgcaggccggaggatcacaggaaacaatgctaaataacaa 247  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33137018 aaaataactacggaaaaactggtatagcagacaaaaacgacacagacgaaaatacaagactgcaggccggaggatcacaggaaacaatgctaaataacaa 33136919  T
Q  248 gccctagaacaacttcctgaacagcatagtcattaataataagcctaatattcaagaaattggtagataatgaagaatacctttttaccattgtcgatga 347  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33136918 gccctataataacttcctgaacagcatagtcattaataataagcctaatattcaagaaattggtagataatgaagaatacctttttaccattgtcgatga 33136819  T
Q  348 tgatatggcgatcagatagagcgagataaagagcttttttggtaggagcg 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33136818 tgatatggcgatcagatagagcgagataaagagcttttttggtagaagcg 33136769  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 427 - 506
Target Start/End: Complemental strand, 33136772 - 33136693
Alignment:
Q  427 agcggttatgccttgaggatgggaagtcagaaaacgattccacaccgtgtcggaatcggccgcagaatgaaaagacttag 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33136772 agcggttatgccttgaggatgggaagtcagaaaacgattccacaccgtgtcggaatcggccgcagaatgaaaagacttag 33136693  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 337 - 412
Target Start/End: Complemental strand, 18558348 - 18558273
Alignment:
Q  337 attgtcgatgatgatatggcgatcagatagagcgagataaagagcttttttggtaggagcgtttgcatgggaagga 412  Q
    ||||||||| |||||  ||||||||||||| |||||||| ||||| |||||||| |||||||| |||  |||||||    
T  18558348 attgtcgatcatgatggggcgatcagatagggcgagatagagagcctttttggttggagcgttggcaatggaagga 18558273  T

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Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 319 - 425
Target Start/End: Original strand, 35265517 - 35265623
Alignment:
Q  319 gaagaatacctttttaccattgtcgatgatgatatggcgatcagatagagcgagataaagagcttttttggtaggagcgtttgcatgggaaggagaattt 418  Q
    |||||||||||||||| |||  |||||||||||| | |||||||| ||||||||||| ||||||||||||||||||||||| ||| | |||||||| | |    
T  35265517 gaagaatacctttttatcatgatcgatgatgataggacgatcagagagagcgagatacagagcttttttggtaggagcgttggcaagtgaaggagagtgt 35265616  T
Q  419 gagatga 425  Q
    |||||||    
T  35265617 gagatga 35265623  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 293 - 394
Target Start/End: Original strand, 35228584 - 35228687
Alignment:
Q  293 taatattcaagaaattggtagata--atgaagaatacctttttaccattgtcgatgatgatatggcgatcagatagagcgagataaagagcttttttggt 390  Q
    |||||||| ||||||||| || ||  | ||| |||||||||||||||||||||||||||||| |||||||||||||||| | ||| ||| ||||||||||    
T  35228584 taatattcgagaaattggcagttaggaagaaaaatacctttttaccattgtcgatgatgatagggcgatcagatagagcaatatagagatcttttttggt 35228683  T
Q  391 agga 394  Q
    ||||    
T  35228684 agga 35228687  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 394
Target Start/End: Complemental strand, 35295096 - 35295026
Alignment:
Q  324 atacctttttaccattgtcgatgatgatatggcgatcagatagagcgagataaagagcttttttggtagga 394  Q
    ||||||||||||||| ||| ||||| ||| ||||||||||||| |||||||||||| | ||||||||||||    
T  35295096 atacctttttaccatggtcaatgattatagggcgatcagatagggcgagataaagatcctttttggtagga 35295026  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 428
Target Start/End: Original strand, 35273046 - 35273155
Alignment:
Q  319 gaagaatacctttttaccattgtcgatgatgatatggcgatcagatagagcgagataaagagcttttttggtaggagcgtttgcatgggaaggagaattt 418  Q
    |||||||||||||||| |||  |||||||||| | |||||||||||||||| ||||| ||| | ||||||||||||  ||| | | |||||||||| | |    
T  35273046 gaagaatacctttttatcatgatcgatgatgacagggcgatcagatagagcaagatagagatcctttttggtaggaatgttggtaagggaaggagagtgt 35273145  T
Q  419 gagatgatag 428  Q
    ||||| ||||    
T  35273146 gagataatag 35273155  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 413
Target Start/End: Original strand, 35477083 - 35477207
Alignment:
Q  291 cctaatattcaagaaattggtag--ataatgaagaatacctttttaccattgtcgatgatgatatggcgatcagatagagcgagataaagagcttttttg 388  Q
    |||||||||||| |||||||  |  |||| |||||||||||||| | ||||||||||||||||| |||| |||||||||| |||| | ||||| || |||    
T  35477083 cctaatattcaaaaaattggaggttataaagaagaataccttttgagcattgtcgatgatgatagggcggtcagatagagtgagaaagagagccttcttg 35477182  T
Q  389 gtaggagcgtttgcatgggaaggag 413  Q
    || |||| ||| |||  ||||||||    
T  35477183 gttggagtgttggcaatggaaggag 35477207  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 389
Target Start/End: Original strand, 45534578 - 45534643
Alignment:
Q  324 atacctttttaccattgtcgatgatgatatggcgatcagatagagcgagataaagagcttttttgg 389  Q
    |||||||||| |||||||||||||||||| |  ||||||||||||| ||||||||||| |||||||    
T  45534578 atacctttttgccattgtcgatgatgataggttgatcagatagagcaagataaagagcctttttgg 45534643  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 389
Target Start/End: Original strand, 35193052 - 35193105
Alignment:
Q  336 cattgtcgatgatgatatggcgatcagatagagcgagataaagagcttttttgg 389  Q
    ||||||||||||||||| || ||||||| ||||||||||| |||||||||||||    
T  35193052 cattgtcgatgatgatagggagatcagagagagcgagatacagagcttttttgg 35193105  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 408
Target Start/End: Original strand, 35203398 - 35203487
Alignment:
Q  319 gaagaatacctttttaccattgtcgatgatgatatggcgatcagatagagcgagataaagagcttttttggtaggagcgtttgcatggga 408  Q
    |||||||||||||| | ||||||||||||||||| ||  |||||| ||||| ||||| |||| ||||||||| ||| |||| ||| ||||    
T  35203398 gaagaataccttttgatcattgtcgatgatgataggggaatcagagagagctagatacagagattttttggttggaacgttagcaaggga 35203487  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 427
Target Start/End: Original strand, 35222953 - 35223056
Alignment:
Q  324 atacctttttaccattgtcgatgatgatatggcgatcagatagagcgagataaagagcttttttggtaggagcgtttgcatgggaaggagaatttgagat 423  Q
    ||||||||||||||| ||||||||||||| || ||| ||| || || ||||| ||||  ||||| ||||||  |||||||  ||||||||| | ||| ||    
T  35222953 atacctttttaccatcgtcgatgatgatagggtgattagagagggcaagatagagagacttttttgtaggaatgtttgcaaaggaaggagagtgtgatat 35223052  T
Q  424 gata 427  Q
    ||||    
T  35223053 gata 35223056  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 35146233 - 35146144
Alignment:
Q  323 aatacctttttaccattgtcgatgatgatatggcgatcagatagagcgagataaagagcttttttggtaggagcgtttgcatgggaagga 412  Q
    |||||||||| |||||  |||||||||||| |  ||||| | ||||||||||| ||||| |||||||| |||  ||| ||| ||||||||    
T  35146233 aataccttttgaccatgatcgatgatgataggatgatcatagagagcgagatagagagcctttttggttggaatgttggcaagggaagga 35146144  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 428
Target Start/End: Original strand, 45526975 - 45527079
Alignment:
Q  324 atacctttttaccattgtcgatgatgatatggcgatcagatagagcgagataaagagcttttttggtaggagcgtttgcatgggaaggagaatttgagat 423  Q
    ||||||||||  ||| ||||||||||||| | ||||| ||||| |  ||||| ||||| ||||||| |||||| |||||  | ||||| || | ||||||    
T  45526975 atacctttttggcatcgtcgatgatgataggtcgatcggatagggtaagatagagagcctttttggaaggagcatttgctagagaaggtgactgtgagat 45527074  T
Q  424 gatag 428  Q
    |||||    
T  45527075 gatag 45527079  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 428
Target Start/End: Complemental strand, 898751 - 898643
Alignment:
Q  320 aagaatacctttttaccattgtcgatgatgatatggcgatcagatagagcgagataaagagcttttttggtaggagcgtttgcatgggaaggagaatttg 419  Q
    ||||||||||||  |||||  |||||||||||  ||| ||| || ||||||||||| || || |||||||| |||||||| ||| |||||||||||| ||    
T  898751 aagaatacctttcgaccatgatcgatgatgattgggctatcggagagagcgagatagagggcctttttggtgggagcgttggcaagggaaggagaatgtg 898652  T
Q  420 agatgatag 428  Q
    |||||||||    
T  898651 agatgatag 898643  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 428
Target Start/End: Complemental strand, 17663623 - 17663518
Alignment:
Q  323 aatacctttttaccattgtcgatgatgatatggcgatcagatagagcgagataaagagcttttttggtaggagcgtttgcatgggaaggagaatttgaga 422  Q
    ||||||||| |||| | ||||||||||||| |||||||||||||||| |  || ||| |||||||||||  || ||||||  |||||||||| | | |||    
T  17663623 aatacctttgtaccctggtcgatgatgatagggcgatcagatagagccatgtagagatcttttttggtaaaagtgtttgccagggaaggagattgtaaga 17663524  T
Q  423 tgatag 428  Q
    ||||||    
T  17663523 tgatag 17663518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 428
Target Start/End: Complemental strand, 19246278 - 19246173
Alignment:
Q  323 aatacctttttaccattgtcgatgatgatatggcgatcagatagagcgagataaagagcttttttggtaggagcgtttgcatgggaaggagaatttgaga 422  Q
    ||||||||| |||| |  |||||||||||| |||||||||||||||| |  || ||| |||||||||||  || ||||||  | |||||||| | | |||    
T  19246278 aatacctttgtaccctgatcgatgatgatagggcgatcagatagagccatgtagagatcttttttggtaaaagtgtttgccagtgaaggagattgtaaga 19246179  T
Q  423 tgatag 428  Q
    ||||||    
T  19246178 tgatag 19246173  T

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