View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6622_low_17 (Length: 470)

Name: NF6622_low_17
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6622_low_17
NF6622_low_17
[»] chr8 (4 HSPs)
chr8 (18-460)||(41337556-41337998)
chr8 (41-129)||(11057580-11057668)
chr8 (323-373)||(12556908-12556958)
chr8 (321-353)||(15804393-15804425)
[»] chr5 (3 HSPs)
chr5 (36-162)||(2607369-2607495)
chr5 (267-360)||(14332753-14332848)
chr5 (307-358)||(43427786-43427838)
[»] chr7 (2 HSPs)
chr7 (41-165)||(29767798-29767922)
chr7 (323-365)||(43455923-43455965)
[»] chr1 (3 HSPs)
chr1 (259-373)||(43040133-43040255)
chr1 (307-362)||(7047092-7047148)
chr1 (321-365)||(44225751-44225795)
[»] chr4 (4 HSPs)
chr4 (321-359)||(53028037-53028075)
chr4 (52-165)||(34415880-34415993)
chr4 (307-365)||(8000011-8000069)
chr4 (258-302)||(25495944-25495988)
[»] chr2 (3 HSPs)
chr2 (307-372)||(33785523-33785588)
chr2 (321-373)||(17805008-17805060)
chr2 (260-300)||(33785469-33785509)
[»] chr6 (1 HSPs)
chr6 (322-371)||(5127464-5127513)
[»] chr3 (2 HSPs)
chr3 (336-373)||(20348352-20348389)
chr3 (307-358)||(1565811-1565863)


Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 41337998 - 41337556
Alignment:
Q  18 acttgaacaatggttttctttttagtgctgctgttaattctgatacacatgaacaagttgccatcaagaagattggtaatgcatttgacaatataattga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337998 acttgaacaatggttttctttttagtgctgctgttaattctgatacacatgaacaagttgccatcaagaagattggtaatgcatttgacaatataattga 41337899  T
Q  118 tgctaaaaggactttgagagaaatcaagctccttcgtcacatggatcacccaaatgtaagtgttcatctcttatttattttcatattttactacttgctc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337898 tgctaaaaggactttgagagaaatcaagctccttcgtcacatggatcacccaaatgtaagtgttcatctcttatttattttcatattttactacttgctc 41337799  T
Q  218 atcaaattcgtannnnnnnnnnnnngaagttgaagaagaggaaaattattattaattaaagtggcaatagtggccattttacaacggtcggatttgaact 317  Q
    ||||||||||||             |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41337798 atcaaattcgtatttttttttttttgaagttgaagaagaggaaaattattattaattaacgtggcaatagtggccattttacaacggtcggatttgaact 41337699  T
Q  318 ccgcccttgaggttataaggtcaaactcttaccactgagctgacaccttatggacatctagttcgtatgtaaactcttaatatctttggtaaatcattca 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41337698 ccgcccttgaggttataaggtcaaactcttaccactgagctgacaccttatggacatcaagttcgtatgtaaactcttaatatctttggtaaatcattca 41337599  T
Q  418 tgagtgtataaggctaaattatataaccttgttctggtctgtg 460  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  41337598 tgagtgtataaggctaaattatataaccttgttctggtctgtg 41337556  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 11057580 - 11057668
Alignment:
Q  41 agtgctgctgttaattctgatacacatgaacaagttgccatcaagaagattggtaatgcatttgacaatataattgatgctaaaaggac 129  Q
    ||||||||||| ||| |||| ||||  ||  |||| ||||| ||||||||||| |||||||||||||| | ||| ||||||||||||||    
T  11057580 agtgctgctgtaaatgctgagacacgcgaggaagtcgccattaagaagattggcaatgcatttgacaacagaatagatgctaaaaggac 11057668  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 373
Target Start/End: Original strand, 12556908 - 12556958
Alignment:
Q  323 cttgaggttataaggtcaaactcttaccactgagctgacaccttatggaca 373  Q
    ||||| |||| || ||||||||||||||| ||||||||||||| |||||||    
T  12556908 cttgatgttacaaagtcaaactcttaccaatgagctgacacctcatggaca 12556958  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 15804393 - 15804425
Alignment:
Q  321 cccttgaggttataaggtcaaactcttaccact 353  Q
    |||||||||||| ||||||||||||||||||||    
T  15804393 cccttgaggttacaaggtcaaactcttaccact 15804425  T

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Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 36 - 162
Target Start/End: Original strand, 2607369 - 2607495
Alignment:
Q  36 tttttagtgctgctgttaattctgatacacatgaacaagttgccatcaagaagattggtaatgcatttgacaatataattgatgctaaaaggactttgag 135  Q
    |||| |||||||||||||||||||||||||||||  |||||||||||||||||||||  ||| |||||||||| || |||||||||||||||||||||||    
T  2607369 ttttcagtgctgctgttaattctgatacacatgaggaagttgccatcaagaagattgccaatacatttgacaacattattgatgctaaaaggactttgag 2607468  T
Q  136 agaaatcaagctccttcgtcacatgga 162  Q
     ||||| ||||| ||||||||||||||    
T  2607469 ggaaattaagcttcttcgtcacatgga 2607495  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 360
Target Start/End: Complemental strand, 14332848 - 14332753
Alignment:
Q  267 tattaattaaagtggcaatagtggccattttacaacggtcggat-ttgaactccg-cccttgaggttataaggtcaaactcttaccactgagctga 360  Q
    |||||||||||||| ||  | || |||||||||||| ||||||  |||||||||  ||||||||||||||| ||||||||||| ||||||||||||    
T  14332848 tattaattaaagtgacaccaatgaccattttacaaccgtcggaaattgaactccatcccttgaggttataaagtcaaactctttccactgagctga 14332753  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 43427838 - 43427786
Alignment:
Q  307 ggatttgaactccg-cccttgaggttataaggtcaaactcttaccactgagct 358  Q
    |||||||||||||  |||||||||||| |||| ||||||||||||||||||||    
T  43427838 ggatttgaactccctcccttgaggttacaaggccaaactcttaccactgagct 43427786  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 29767922 - 29767798
Alignment:
Q  41 agtgctgctgttaattctgatacacatgaacaagttgccatcaagaagattggtaatgcatttgacaatataattgatgctaaaaggactttgagagaaa 140  Q
    ||||||||||| ||| | || ||||  ||| |||||||||| |||||| |||| |||||||||||||| | |||||||||||||||||| ||  ||||||    
T  29767922 agtgctgctgtaaatgcggagacacgggaagaagttgccattaagaaggttggcaatgcatttgacaacagaattgatgctaaaaggaccttacgagaaa 29767823  T
Q  141 tcaagctccttcgtcacatggatca 165  Q
    | || || |  || |||||||||||    
T  29767822 ttaaacttcagcggcacatggatca 29767798  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 43455965 - 43455923
Alignment:
Q  323 cttgaggttataaggtcaaactcttaccactgagctgacacct 365  Q
    |||||||||| |||||||||||||||| | |||||||||||||    
T  43455965 cttgaggttacaaggtcaaactcttactagtgagctgacacct 43455923  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 373
Target Start/End: Original strand, 43040133 - 43040255
Alignment:
Q  259 aaaattattattaattaaagtggcaatagtggccattttacaacggtc-------ggatttgaactccgcc-cttgaggttataaggtcaaactcttacc 350  Q
    ||||||| ||||||||||||||||| |  || ||||||||||||  ||       |||||||||||||| | |||||||||| |||||||  ||||||||    
T  43040133 aaaattactattaattaaagtggcactgatgaccattttacaaccttccccggggggatttgaactccgtctcttgaggttacaaggtcaggctcttacc 43040232  T
Q  351 actgagctgacaccttatggaca 373  Q
    ||||||||| ||||| |||||||    
T  43040233 actgagctggcacctcatggaca 43040255  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 7047092 - 7047148
Alignment:
Q  307 ggatttgaactccg-cccttgaggttataaggtcaaactcttaccactgagctgaca 362  Q
    |||||||||||| | ||||||||||||||||||||||| ||||| |||||| |||||    
T  7047092 ggatttgaactcggtcccttgaggttataaggtcaaacacttactactgagttgaca 7047148  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 44225751 - 44225795
Alignment:
Q  321 cccttgaggttataaggtcaaactcttaccactgagctgacacct 365  Q
    ||||||||||||||||||| || ||||| |||||||| |||||||    
T  44225751 cccttgaggttataaggtctaattcttatcactgagccgacacct 44225795  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 53028037 - 53028075
Alignment:
Q  321 cccttgaggttataaggtcaaactcttaccactgagctg 359  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  53028037 cccttgaggttataaggtcaaactcttatcactgagctg 53028075  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 34415880 - 34415993
Alignment:
Q  52 taattctgatacacatgaacaagttgccatcaagaagattggtaatgcatttgacaatataattgatgctaaaaggactttgagagaaatcaagctcctt 151  Q
    |||||| || ||| ||||||| |||||  | ||||||||||  |||||||||||||| |  ||||||||||| |||||| |  | ||||||||||| |||    
T  34415880 taattcggagacaaatgaacatgttgcggttaagaagattgcaaatgcatttgacaacaagattgatgctaagaggactctccgtgaaatcaagctgctt 34415979  T
Q  152 cgtcacatggatca 165  Q
    || || ||||||||    
T  34415980 cgccatatggatca 34415993  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 8000069 - 8000011
Alignment:
Q  307 ggatttgaactccgcccttgaggttataaggtcaaactcttaccactgagctgacacct 365  Q
    ||||||||| |||| ||||||||||| || |||||||| || ||| |||||||||||||    
T  8000069 ggatttgaaatccgtccttgaggttacaaagtcaaactttttccattgagctgacacct 8000011  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 25495944 - 25495988
Alignment:
Q  258 gaaaattattattaattaaagtggcaatagtggccattttacaac 302  Q
    ||||||||| |||||||||||||| | |||| |||||||||||||    
T  25495944 gaaaattatgattaattaaagtggtattagtagccattttacaac 25495988  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 33785523 - 33785588
Alignment:
Q  307 ggatttgaactccgcccttgaggttataaggtcaaactcttaccactgagctgacaccttatggac 372  Q
    |||||||||||||| | |||||| |||||||||||  |||||||||  ||||||||||| ||||||    
T  33785523 ggatttgaactccgtcgttgaggctataaggtcaatatcttaccacaaagctgacacctcatggac 33785588  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 373
Target Start/End: Complemental strand, 17805060 - 17805008
Alignment:
Q  321 cccttgaggttataaggtcaaactcttaccactgagctgacaccttatggaca 373  Q
    ||||||||||| ||||||||| ||||||||||||||| |||| || |||||||    
T  17805060 cccttgaggttgtaaggtcaagctcttaccactgagcggacaactcatggaca 17805008  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 33785469 - 33785509
Alignment:
Q  260 aaattattattaattaaagtggcaatagtggccattttaca 300  Q
    ||||||| |||||||||||||||| || |||||||||||||    
T  33785469 aaattatcattaattaaagtggcattattggccattttaca 33785509  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 5127513 - 5127464
Alignment:
Q  322 ccttgaggttataaggtcaaactcttaccactgagctgacaccttatgga 371  Q
    |||||||| | ||| || ||||||||||||||||| ||||||||||||||    
T  5127513 ccttgaggctgtaacgtgaaactcttaccactgagttgacaccttatgga 5127464  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 373
Target Start/End: Complemental strand, 20348389 - 20348352
Alignment:
Q  336 ggtcaaactcttaccactgagctgacaccttatggaca 373  Q
    |||||||||||||| | |||||||||||||||||||||    
T  20348389 ggtcaaactcttacgattgagctgacaccttatggaca 20348352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 1565863 - 1565811
Alignment:
Q  307 ggatttgaactccg-cccttgaggttataaggtcaaactcttaccactgagct 358  Q
    |||||||||||| | |||||||||||| |||||| | ||||||||||||||||    
T  1565863 ggatttgaactctgtcccttgaggttacaaggtcgagctcttaccactgagct 1565811  T

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