View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6622_low_18 (Length: 444)
Name: NF6622_low_18
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6622_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 26452457 - 26452029
Alignment:
| Q |
1 |
atatactattacatgagattgtcgtggggaaataatccaaattatatattattatacacatactcattataacaaccactagacttggtccttttgacat |
100 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26452457 |
atataatattacatgagaatgtcgtggggaaataatccgaattatatattattatacacatactcattataacaaccactagaattggtccttttgacat |
26452358 |
T |
|
| Q |
101 |
tacaactatacaattttatacaagcaccaacaaaatcgatgctctagttacaatacacaactaagcctctaaaaccaaaggtttgaaaaattggcaggtt |
200 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26452357 |
taaaactatacaaatttatacaagcaccaacaaaatcgatgctctagttacaatacacaactaagcctctaaaaccaaaggtttgaaaaattggcaggtt |
26452258 |
T |
|
| Q |
201 |
ttttacaagaacttttcttagatcattttcacaacccaaagcttatattttctaacatacaaatacacaagacaaggtcctataagatttgcttcagaca |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26452257 |
ttttacaagtacttttcttagatcattttcacaacccaaagcttatattttctaacatacaaatacacaagacaaggtcctataagatttgcttcagaca |
26452158 |
T |
|
| Q |
301 |
gtgacttacaaagcttgatataaagatctaaatttccatattgctgtatccttttccttaaaccttgcataacagcaactctatccaaatactcaggata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26452157 |
gtgacttacaaagcttgatataaagatctaaatttccatattgctgtatccttttccttaaaccttgcataacagcaactctatccaaatactcaggata |
26452058 |
T |
|
| Q |
401 |
gaatcccaattcaagcattttcatcacag |
429 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
26452057 |
gaatcccaattcaagcattttcattacag |
26452029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University