View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6622_low_20 (Length: 412)
Name: NF6622_low_20
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6622_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 5 - 211
Target Start/End: Complemental strand, 41531166 - 41530960
Alignment:
| Q |
5 |
cgagcagaacctgtgagcagttagtgctttcaaataaggtcaatgttctctgcaatggtgtggaaggcatatattttccaagcctacacttgtaagcaca |
104 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41531166 |
cgagcagaaacagtgagcagttagtgctttcaaataaggtcaatgttctctgcaatggtgtggaaggcatatattttccaagcctacacttgtaagcaca |
41531067 |
T |
|
| Q |
105 |
aactccatcaaaattcttggacataannnnnnnngtcccatcacagcttatcatttaacctgcattgtcatgtttcaaattgattaatgctgattttgaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41531066 |
aactccatcaaaattcttggacataattttttttgtcctatcacagcttatcatttaacctgcattgtcatgtttcaaattgattaatgctgattttgaa |
41530967 |
T |
|
| Q |
205 |
tgtaccg |
211 |
Q |
| |
|
||||||| |
|
|
| T |
41530966 |
tgtaccg |
41530960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 331 - 404
Target Start/End: Complemental strand, 41530840 - 41530767
Alignment:
| Q |
331 |
agagttgtgtgcaagtgtggtttttgtgggacagaaaagcaagcgcttagtgaatgggaacgacacacaggttc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41530840 |
agagttgtgtgcaagtgtggtttttgtgggacagaaaagcaagcgcttagtgaatgggaacgacacacaggttc |
41530767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 15626123 - 15626219
Alignment:
| Q |
23 |
agttagtgctttcaaataaggtcaatgttctctgcaatggtgtggaaggcatatattttccaagcctacacttgtaagcacaaactccatcaaaatt |
119 |
Q |
| |
|
||||||| ||| |||| ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||| |||||||| |
|
|
| T |
15626123 |
agttagtacttccaaagaaggtcactgttctctgcaatagtgtggaaggcatatattttccaagccttcacttgtaagcataaactcattcaaaatt |
15626219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 816572 - 816656
Alignment:
| Q |
26 |
tagtgctttcaaataaggtcaatgttctctgcaatggtgtggaaggcatatattttccaagcctacacttgtaagcacaaactcc |
110 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| | || |||||||||||| ||||||| |
|
|
| T |
816572 |
tagtgcttccaaagaaggtcactgttctctgcaatggtgtggaaggcatatattttccatgtcttcacttgtaagcataaactcc |
816656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 331 - 404
Target Start/End: Original strand, 817375 - 817448
Alignment:
| Q |
331 |
agagttgtgtgcaagtgtggtttttgtgggacagaaaagcaagcgcttagtgaatgggaacgacacacaggttc |
404 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| ||||| || || ||||||||||||||||| ||||||||||| |
|
|
| T |
817375 |
agagttatgtgcaagtgtgatttttgtgggactgaaaaacaggcacttagtgaatgggaacgccacacaggttc |
817448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University