View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6622_low_21 (Length: 376)
Name: NF6622_low_21
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6622_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 360
Target Start/End: Complemental strand, 28478593 - 28478244
Alignment:
| Q |
11 |
cataggtaaatcattgaaaggggagtgactaattcataaaggaagatgtgtttaccttaagtggtccatcaaggagaccagctaagcttaagaattgaga |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28478593 |
cataggtaaatcattgaaaggggagtgactaattcataaaggaaggtgtgtttaccttaagtggtccatcaaggagaccagctaagcttaagaattgaga |
28478494 |
T |
|
| Q |
111 |
aacatgtgatccaaaacctccaatagaaccttcttccactgtgatcagtatttcatgctctctagccagtagcctaatgagatcagtatccaaaggtttg |
210 |
Q |
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|||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28478493 |
aacatgtgatccaaaacctccaatggaaccctcctccactgtgatcagtatttcatgctctctagccagtagcctaatgagatcagtatccaaaggtttg |
28478394 |
T |
|
| Q |
211 |
caaaacctagcatcagaaactgtcacataaacccctactgctctaagcatttctgctgctttcatgcattgctgaaccatacagccatatcccaaaatcg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28478393 |
caaaacctagcatcagaaactgtcacataaacccctactgctctaagcatttctgctgctttcatgcattgctgaaccatacagccatatcccaaaatcg |
28478294 |
T |
|
| Q |
311 |
caactctgcttccttcaagcagaattctgccttttccaatctgtataacg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28478293 |
caactctgcttccttcaagcagaattctgccttttccaatctgtataacg |
28478244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 359
Target Start/End: Complemental strand, 28470199 - 28469851
Alignment:
| Q |
11 |
cataggtaaatcattgaaaggggagtgactaattcataaaggaagatgtgtttaccttaagtggtccatcaaggagaccagctaagcttaagaattgaga |
110 |
Q |
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||||| |||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28470199 |
catagttaaatcattgaaaggggagtgaataattcataacggaaggtgtgtttaccttaagtggtccatcaaggagaccagctaagcttaagaattgtga |
28470100 |
T |
|
| Q |
111 |
aacatgtgatccaaaacctccaatagaaccttcttccactgtgatcagtatttcatgctctctagccagtagcctaatgagatcagtatccaaaggtttg |
210 |
Q |
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|||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28470099 |
aacatgtgatccaaaacctccaatggaaccctcctccactgtgatcagtatttcatgctctctagccagtagcctaatgagatcagtatccaaaggtttg |
28470000 |
T |
|
| Q |
211 |
caaaacctagcatcagaaactgtcacataaacccctactgctctaagcatttctgctgctttcatgcattgctgaaccatacagccatatcccaaaatcg |
310 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28469999 |
caaaacctagcatcagcaactgtcacataaacccctaccgctctaagcatttctgctgctttcatgcattgctgaaccatacagccgtatcccaaaatcg |
28469900 |
T |
|
| Q |
311 |
caactctgcttccttcaagcagaattctgccttttccaatctgtataac |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28469899 |
caactctgcttccttcaagcagaattctgccttttccaatctgtataac |
28469851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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