View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6622_low_22 (Length: 374)
Name: NF6622_low_22
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6622_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 56 - 370
Target Start/End: Complemental strand, 3028522 - 3028208
Alignment:
| Q |
56 |
cttgtatactttacaggttcttgaatacaattcacctaaggaactcatgcaaaacgaagaaactgcgttctacaaaatggttcaaagtaccggtcctgca |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3028522 |
cttgtatactttacaggttcttgaatacaattcacctaaggaactcttacaaaatgaagaaactgcattctacaaaatggttcaaagtaccggtcctgca |
3028423 |
T |
|
| Q |
156 |
aatgctgagtatttatgcagcttagtgtttggaaggaaagagaacaattcaaatgaatataacaaggagtcggaaaacggtatgagacagttagcatcta |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3028422 |
aatgctgagtatttatgcagcttagtgtttggaaggaaagagaacaattcaaatgaatataacaaggagtcggaaaacggtatgagacagttagcatcta |
3028323 |
T |
|
| Q |
256 |
cagattggactgctgctactcaatttgcaatagcttctacactttcttcgttacatcaacaccttcaaagtccaaatactaaagacgataaagatatcct |
355 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3028322 |
cagattggactgctgctactcagtttgcaatagcttctacactttcttcgttacatcaacaccttcaaagtccaaatactaaagacgataaagatatcct |
3028223 |
T |
|
| Q |
356 |
taatagaacaaagga |
370 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
3028222 |
taatagaacatagga |
3028208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 56 - 370
Target Start/End: Complemental strand, 3006044 - 3005730
Alignment:
| Q |
56 |
cttgtatactttacaggttcttgaatacaattcacctaaggaactcatgcaaaacgaagaaactgcgttctacaaaatggttcaaagtaccggtcctgca |
155 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| || ||||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3006044 |
cttgtatgctttacaggttcttgaatacaattcacctgagaaactcttacaaaatgaagaaactgcattctacaaaatggttcaaagtaccggtcctgca |
3005945 |
T |
|
| Q |
156 |
aatgctgagtatttatgcagcttagtgtttggaaggaaagagaacaattcaaatgaatataacaaggagtcggaaaacggtatgagacagttagcatcta |
255 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
3005944 |
aatgccgagtatttatgtagcttagtatttggaaggaaagagaataattcaaatgaatttaacaaggagtcggaaaacagtacgagacagttagcatcta |
3005845 |
T |
|
| Q |
256 |
cagattggactgctgctactcaatttgcaatagcttctacactttcttcgttacatcaacaccttcaaagtccaaatactaaagacgataaagatatcct |
355 |
Q |
| |
|
|| ||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||| || || |
|
|
| T |
3005844 |
caaattgggctgctgctactcagtttgcaatagcttctacactttcttctttacatcaacaccttcaaagtccaaatactaacgacaataaagacattct |
3005745 |
T |
|
| Q |
356 |
taatagaacaaagga |
370 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3005744 |
taatagaacaaagga |
3005730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University