View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6622_low_24 (Length: 330)

Name: NF6622_low_24
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6622_low_24
NF6622_low_24
[»] chr1 (4 HSPs)
chr1 (99-245)||(18431611-18431755)
chr1 (93-235)||(22788364-22788508)
chr1 (20-93)||(30773032-30773103)
chr1 (111-192)||(6154604-6154683)
[»] chr2 (1 HSPs)
chr2 (94-245)||(16916344-16916491)
[»] chr6 (2 HSPs)
chr6 (99-238)||(5014070-5014213)
chr6 (110-235)||(16692978-16693108)
[»] chr7 (2 HSPs)
chr7 (100-245)||(46437312-46437453)
chr7 (110-176)||(38663019-38663084)
[»] chr5 (4 HSPs)
chr5 (99-245)||(424736-424876)
chr5 (99-238)||(18113738-18113878)
chr5 (110-145)||(25634440-25634475)
chr5 (200-237)||(17074657-17074694)
[»] chr3 (3 HSPs)
chr3 (91-235)||(26555473-26555615)
chr3 (180-235)||(52118379-52118434)
chr3 (110-146)||(2125280-2125316)
[»] chr8 (2 HSPs)
chr8 (181-235)||(28535248-28535302)
chr8 (92-145)||(28535191-28535244)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 18431755 - 18431611
Alignment:
Q  99 gcggatgtagagtgaaacatggtgtggcagctgccacaacaaattctagcctaattattattatttttatatgcataaacataaggcacgggaaggaaag 198  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||| | |||  |||||||||||||||||||||| |||||||||||||    
T  18431755 gcggatgtagagtgaaacatggtgtggcagctgccacaccagattctagcctaattttaatt--ttttatatgcataaacataaggtacgggaaggaaag 18431658  T
Q  199 tggaaattggaaaatacacacaacacaatcaaaacaaaacgcattgt 245  Q
    ||||||||| |||| ||||||||||||| |||||||||||| |||||    
T  18431657 tggaaattgaaaaacacacacaacacaaacaaaacaaaacgtattgt 18431611  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 93 - 235
Target Start/End: Complemental strand, 22788508 - 22788364
Alignment:
Q  93 tcaggagcggatgtagagtgaaacatggtgtggcagctgccacaacaaattctagcctaattatta--ttatttttatatgcataaacataaggcacggg 190  Q
    ||||| ||||||| || |||||||||||||||||| |||||||| || ||||| |||||||| ||   || |||||||||| ||||||||| |||| |||    
T  22788508 tcaggggcggatggagtgtgaaacatggtgtggcaactgccacaccagattcttgcctaattttttatttttttttatatgtataaacatatggcaaggg 22788409  T
Q  191 aaggaaagtggaaattggaaaatacacacaacacaatcaaaacaa 235  Q
    |||||||||||||||||||||| |||||| | |||| ||||||||    
T  22788408 aaggaaagtggaaattggaaaacacacaccatacaaacaaaacaa 22788364  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 30773032 - 30773103
Alignment:
Q  20 aacttaaatgtatatatatttactatttactataattataacacaaaaacttaataggtatctaacatggtaat 93  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  30773032 aacttaaatgtata--tatttactatttactataattataacacaaaaaattaatcggtatctaacatggtaat 30773103  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 6154683 - 6154604
Alignment:
Q  111 tgaaacatggtgtggcagctgccacaacaaattctagcctaattattattatttttatatgcata--aacataaggcacgggaa 192  Q
    |||||||||||||| ||||||| ||| || ||||||||||||||    ||  |||||||||||||  |||||||||||||||||    
T  6154683 tgaaacatggtgtgacagctgcaacaccagattctagcctaatt----tttgttttatatgcataataacataaggcacgggaa 6154604  T

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Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 94 - 245
Target Start/End: Complemental strand, 16916491 - 16916344
Alignment:
Q  94 caggagcggatgtagagtgaaacatggtgtggcagctgccacaacaaattctagcctaattattattatttttatatgcataaacataaggcacgggaag 193  Q
    |||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||    ||||||||||||||||||||||||||||||||    
T  16916491 caggggcggatgtagagtgaaacatggtgtgtcagctgccacaccagattctagcctaattttt----tttttatatgcataaacataaggcacgggaag 16916396  T
Q  194 gaaagtggaaattggaaaatacacacaacacaatcaaaacaaaacgcattgt 245  Q
    ||||||||||||||||||||| |||||| |||| ||||||||||| ||||||    
T  16916395 gaaagtggaaattggaaaatatacacaatacaaacaaaacaaaacacattgt 16916344  T

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Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 5014213 - 5014070
Alignment:
Q  99 gcggatgtagagtgaaacatggtgtggcagctgccacaacaaattctagcctaatt----attattatttttatatgcataaacataaggcacgggaagg 194  Q
    |||||||||||||||||||||||||||||||||||||| || |||||| |||||||     || || ||||||||||||||||||||||||| |||||||    
T  5014213 gcggatgtagagtgaaacatggtgtggcagctgccacaccagattctaacctaatttttgttttttttttttatatgcataaacataaggcatgggaagg 5014114  T
Q  195 aaagtggaaattggaaaatacacacaacacaatcaaaacaaaac 238  Q
    |||||||||||||||||| ||||||||||||| |||||||||||    
T  5014113 aaagtggaaattggaaaacacacacaacacaaacaaaacaaaac 5014070  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 110 - 235
Target Start/End: Original strand, 16692978 - 16693108
Alignment:
Q  110 gtgaaacatggtgtggcagctgccacaacaaattctagcctaattattattatt-----tttatatgcataaacataaggcacgggaaggaaagtggaaa 204  Q
    |||||||||||||||| |||||||||| || ||||| |||||||| || || ||     ||||||||||||||||||||||| |||||||||||||||||    
T  16692978 gtgaaacatggtgtggtagctgccacaccagattcttgcctaatttttttttttttttgtttatatgcataaacataaggcaagggaaggaaagtggaaa 16693077  T
Q  205 ttggaaaatacacacaacacaatcaaaacaa 235  Q
    |||||||| |||||| |||||| ||||||||    
T  16693078 ttggaaaacacacaccacacaaacaaaacaa 16693108  T

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Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 100 - 245
Target Start/End: Original strand, 46437312 - 46437453
Alignment:
Q  100 cggatgtagagtgaaacatggtgtggcagctgccacaacaaattctagcctaattattattatttttatatgcataaacataaggcacgggaaggaaagt 199  Q
    |||||||||||||||||||||||||||||||||||||  | ||| || ||||||| ||    ||||||||||||||||||||||||||| ||||||||||    
T  46437312 cggatgtagagtgaaacatggtgtggcagctgccacacaagattataacctaattttt----tttttatatgcataaacataaggcacgagaaggaaagt 46437407  T
Q  200 ggaaattggaaaatacacacaacacaatcaaaacaaaacgcattgt 245  Q
    ||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  46437408 ggaaattggaaaacacacacaacacaaacaaaacaaaacgcgttgt 46437453  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 38663019 - 38663084
Alignment:
Q  110 gtgaaacatggtgtggcagctgccacaacaaattctagcctaattattattatttttatatgcataa 176  Q
    ||||||||||||||||||||||||||| || ||||||  || ||| || || |||||||||||||||    
T  38663019 gtgaaacatggtgtggcagctgccacaccagattctaatct-attttttttttttttatatgcataa 38663084  T

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Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 424876 - 424736
Alignment:
Q  99 gcggatgtagagtgaaacatggtgtggcagctgccacaacaaattctagcctaattattattatttttatatgcata--aacataaggcacgggaaggaa 196  Q
    ||||||||| | |||||||||||||||||||||||||| || ||||||||||||||    ||  |||||||||||||  ||||||||||| |    ||||    
T  424876 gcggatgtacattgaaacatggtgtggcagctgccacaccagattctagcctaatt----tttgttttatatgcataataacataaggcagg----ggaa 424785  T
Q  197 agtggaaattggaaaatacacacaacacaatcaaaacaaaacgcattgt 245  Q
    |||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  424784 agtggaaattggaaaagacacacaacacaaacaaaacaaaacgcgttgt 424736  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 18113878 - 18113738
Alignment:
Q  99 gcggatgtagagtgaaacatggtgtggcagctgccacaacaaattctagcctaatt-attattattttt--atatgcataa--acataaggcacgggaag 193  Q
    ||||||||| | |||||||||||||||||| ||||||| || |||||||||| ||| |||||| |||||  ||||   |||  ||||||| || |||||     
T  18113878 gcggatgtacattgaaacatggtgtggcagttgccacaccagattctagccttatttattattttttttttatatttttaataacataagacatgggaa- 18113780  T
Q  194 gaaagtggaaattggaaaatacacacaacacaatcaaaacaaaac 238  Q
       ||||||||||| |||| ||||||||||||| |||||||||||    
T  18113779 ---agtggaaattgaaaaacacacacaacacaaacaaaacaaaac 18113738  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 145
Target Start/End: Complemental strand, 25634475 - 25634440
Alignment:
Q  110 gtgaaacatggtgtggcagctgccacaacaaattct 145  Q
    ||||||||||||||||||||||||||| ||||||||    
T  25634475 gtgaaacatggtgtggcagctgccacaccaaattct 25634440  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 17074657 - 17074694
Alignment:
Q  200 ggaaattggaaaatacacacaacacaatcaaaacaaaa 237  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  17074657 ggaaagtggaaaatacacacaacacaaccaaaacaaaa 17074694  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 26555473 - 26555615
Alignment:
Q  91 aatcaggagcggatgtagagtgaaacatggtgtggcagctgccacaacaaattctagcctaattatt---attatttttatatgcataaacataaggcac 187  Q
    ||||||| ||||||| || ||||||||||||||||||||||||||| || ||||| ||||| || ||    || |||||||||||||||||||||         
T  26555473 aatcaggggcggatggagtgtgaaacatggtgtggcagctgccacaccagattcttgcctattttttttatttttttttatatgcataaacataa----- 26555567  T
Q  188 gggaaggaaagtggaaattggaaaatacacacaacacaatcaaaacaa 235  Q
    ||||||||||||||||||||||||| | |||| |||||| ||||||||    
T  26555568 gggaaggaaagtggaaattggaaaacaaacaccacacaaacaaaacaa 26555615  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 52118379 - 52118434
Alignment:
Q  180 taaggcacgggaaggaaagtggaaattggaaaatacacacaacacaatcaaaacaa 235  Q
    ||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||    
T  52118379 taaggcaagggaaggaaagtggaaattggaaaacacacaccacacaaacaaaacaa 52118434  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 2125280 - 2125316
Alignment:
Q  110 gtgaaacatggtgtggcagctgccacaacaaattcta 146  Q
    ||||||||||||||||||||||||||| || ||||||    
T  2125280 gtgaaacatggtgtggcagctgccacaccagattcta 2125316  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 28535248 - 28535302
Alignment:
Q  181 aaggcacgggaaggaaagtggaaattggaaaatacacacaacacaatcaaaacaa 235  Q
    |||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||    
T  28535248 aaggcaagggaaggaaagtggaaattggaaaacacacaccacacaaacaaaacaa 28535302  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 28535191 - 28535244
Alignment:
Q  92 atcaggagcggatgtagagtgaaacatggtgtggcagctgccacaacaaattct 145  Q
    |||||| ||||||| || ||||||||||||||||||||||||||| || |||||    
T  28535191 atcaggggcggatggagtgtgaaacatggtgtggcagctgccacaccagattct 28535244  T

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