View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6622_low_25 (Length: 290)

Name: NF6622_low_25
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6622_low_25
NF6622_low_25
[»] chr4 (26 HSPs)
chr4 (1-257)||(8859141-8859397)
chr4 (1-257)||(26971414-26971670)
chr4 (1-257)||(55613658-55613913)
chr4 (1-259)||(18263161-18263419)
chr4 (1-259)||(18270022-18270280)
chr4 (1-257)||(19919508-19919764)
chr4 (1-257)||(19925737-19925993)
chr4 (12-257)||(10620310-10620555)
chr4 (12-257)||(10627392-10627637)
chr4 (1-257)||(869570-869826)
chr4 (1-257)||(5714921-5715178)
chr4 (12-257)||(28392144-28392389)
chr4 (1-257)||(5708286-5708542)
chr4 (12-245)||(4425629-4425862)
chr4 (71-257)||(26964590-26964776)
chr4 (12-257)||(47387932-47388177)
chr4 (12-131)||(8846163-8846282)
chr4 (12-129)||(5667198-5667315)
chr4 (114-253)||(10676570-10676709)
chr4 (114-253)||(10890210-10890349)
chr4 (101-232)||(35224601-35224732)
chr4 (195-257)||(10825329-10825391)
chr4 (183-253)||(20579418-20579488)
chr4 (114-181)||(10690356-10690423)
chr4 (114-181)||(10903996-10904063)
chr4 (12-48)||(35224517-35224553)
[»] scaffold0390 (2 HSPs)
scaffold0390 (1-257)||(5911-6167)
scaffold0390 (1-257)||(12927-13183)
[»] chr3 (26 HSPs)
chr3 (1-257)||(10571568-10571824)
chr3 (1-257)||(15599886-15600142)
chr3 (1-257)||(10578334-10578590)
chr3 (1-257)||(15606431-15606687)
chr3 (1-257)||(15341221-15341477)
chr3 (1-257)||(15356588-15356844)
chr3 (1-257)||(16481460-16481715)
chr3 (1-257)||(6111038-6111305)
chr3 (13-257)||(18537956-18538200)
chr3 (12-245)||(32056059-32056292)
chr3 (14-259)||(17196748-17196993)
chr3 (12-256)||(13517769-13518013)
chr3 (12-257)||(1646498-1646743)
chr3 (83-257)||(13212331-13212505)
chr3 (96-257)||(8491428-8491589)
chr3 (12-253)||(16201179-16201420)
chr3 (16-178)||(17137343-17137505)
chr3 (12-254)||(23014348-23014590)
chr3 (1-134)||(17780243-17780376)
chr3 (1-134)||(19081544-19081677)
chr3 (168-253)||(13258661-13258746)
chr3 (101-251)||(25801243-25801392)
chr3 (176-257)||(17780165-17780246)
chr3 (176-257)||(19081466-19081547)
chr3 (1-54)||(13212277-13212330)
chr3 (163-227)||(54333200-54333264)
[»] chr6 (15 HSPs)
chr6 (1-257)||(17690442-17690698)
chr6 (1-257)||(27297608-27297864)
chr6 (1-257)||(29309839-29310095)
chr6 (1-257)||(29316798-29317054)
chr6 (1-257)||(27380229-27380485)
chr6 (1-257)||(27470612-27470868)
chr6 (12-257)||(17683459-17683705)
chr6 (12-257)||(11652658-11652903)
chr6 (92-257)||(27278407-27278572)
chr6 (92-257)||(27303298-27303463)
chr6 (12-131)||(25536292-25536411)
chr6 (68-257)||(18336605-18336794)
chr6 (127-232)||(28755282-28755386)
chr6 (200-232)||(16393506-16393538)
chr6 (101-176)||(16393546-16393621)
[»] chr1 (12 HSPs)
chr1 (1-257)||(18252979-18253235)
chr1 (12-253)||(18531519-18531761)
chr1 (12-257)||(27309555-27309799)
chr1 (20-257)||(9075879-9076116)
chr1 (12-257)||(27130399-27130631)
chr1 (12-257)||(16358035-16358282)
chr1 (96-254)||(22640856-22641014)
chr1 (12-109)||(36815747-36815844)
chr1 (168-257)||(21169411-21169500)
chr1 (72-105)||(27276691-27276724)
chr1 (12-51)||(23509840-23509879)
chr1 (12-48)||(25662054-25662090)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-257)||(5198-5454)
[»] scaffold0433 (1 HSPs)
scaffold0433 (1-257)||(8057-8313)
[»] chr8 (11 HSPs)
chr8 (1-257)||(21941614-21941872)
chr8 (1-257)||(22172434-22172690)
chr8 (12-257)||(6095106-6095351)
chr8 (12-257)||(15327183-15327428)
chr8 (12-257)||(15507552-15507797)
chr8 (1-207)||(28548996-28549203)
chr8 (96-257)||(24643993-24644153)
chr8 (12-207)||(29230377-29230568)
chr8 (71-251)||(24795995-24796170)
chr8 (12-53)||(24643583-24643624)
chr8 (18-51)||(32872123-32872156)
[»] scaffold0234 (2 HSPs)
scaffold0234 (1-259)||(10212-10470)
scaffold0234 (1-259)||(1319-1579)
[»] chr7 (13 HSPs)
chr7 (1-257)||(11535064-11535320)
chr7 (1-257)||(11541982-11542238)
chr7 (1-257)||(29328733-29328993)
chr7 (12-257)||(12739502-12739747)
chr7 (12-257)||(12751819-12752064)
chr7 (1-257)||(18561982-18562238)
chr7 (12-257)||(15153428-15153672)
chr7 (57-257)||(2652990-2653190)
chr7 (61-257)||(9978837-9979033)
chr7 (12-140)||(11557192-11557314)
chr7 (12-99)||(24850719-24850806)
chr7 (12-107)||(13393122-13393217)
chr7 (180-232)||(18256845-18256897)
[»] chr5 (8 HSPs)
chr5 (1-257)||(24694462-24694716)
chr5 (1-257)||(24701231-24701480)
chr5 (12-245)||(19713514-19713747)
chr5 (12-257)||(18565459-18565713)
chr5 (1-201)||(19706230-19706430)
chr5 (12-242)||(938567-938793)
chr5 (176-255)||(39539653-39539732)
chr5 (14-48)||(39539549-39539583)
[»] chr2 (6 HSPs)
chr2 (12-257)||(22790835-22791080)
chr2 (25-257)||(41664739-41664970)
chr2 (1-127)||(21329374-21329502)
chr2 (22-256)||(18620805-18621040)
chr2 (127-232)||(27353433-27353538)
chr2 (12-44)||(18822935-18822967)
[»] scaffold0220 (1 HSPs)
scaffold0220 (1-245)||(19261-19506)
[»] scaffold1199 (1 HSPs)
scaffold1199 (12-257)||(80-330)
[»] scaffold0063 (1 HSPs)
scaffold0063 (12-257)||(6482-6733)
[»] scaffold0008 (1 HSPs)
scaffold0008 (12-257)||(229389-229638)
[»] scaffold0213 (1 HSPs)
scaffold0213 (125-257)||(4313-4445)
[»] scaffold0032 (1 HSPs)
scaffold0032 (12-257)||(107249-107495)
[»] scaffold0203 (1 HSPs)
scaffold0203 (141-257)||(29186-29302)
[»] scaffold0026 (1 HSPs)
scaffold0026 (115-257)||(26276-26418)
[»] scaffold1303 (1 HSPs)
scaffold1303 (96-254)||(986-1143)
[»] scaffold0502 (1 HSPs)
scaffold0502 (68-253)||(62-247)
[»] scaffold0657 (1 HSPs)
scaffold0657 (205-257)||(3870-3922)
[»] scaffold0039 (1 HSPs)
scaffold0039 (169-257)||(87829-87916)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 8859141 - 8859397
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8859141 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 8859240  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8859241 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 8859340  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8859341 catcgctgctttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 8859397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 26971414 - 26971670
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26971414 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaaacattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 26971513  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26971514 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 26971613  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  26971614 catcgctgctttgctttgctcgtgatcagaaagatttatgctacaaaggttctgctc 26971670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 55613658 - 55613913
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  55613658 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattacttactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 55613757  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
     | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  55613758 tc-agccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccagtcatcggagaagttctgttcgtgtggactgagtagagg 55613856  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  55613857 catcgctgctttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 55613913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 18263161 - 18263419
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  18263161 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaaacatgactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 18263260  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18263261 cctagccgccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggataagttctgttcgtgtggactgagtagagg 18263360  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctcgt 259  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  18263361 catcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctcgt 18263419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 18270022 - 18270280
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  18270022 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaaacatgactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 18270121  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18270122 cctagccgccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 18270221  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctcgt 259  Q
    |||||||||||||||||||||||||||||||| |||||| ||| | |||||||||||||    
T  18270222 catcgctgctttgctttgctcgtgatcagaaatatttcttctataaaggttctgctcgt 18270280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 19919764 - 19919508
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  19919764 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactacctttttgtgagtgcttaacctaattcacaaaagttgtgaaac 19919665  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19919664 cctagccgccgctctctaaaccttcttctctctgaatctccgttgaaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 19919565  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||||    
T  19919564 catcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttgtgctc 19919508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 19925993 - 19925737
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  19925993 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactacctttttgtgagtgcttaacctaattcacaaaagttgtgaaac 19925894  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19925893 cctagccgccgctctctaaaccttcttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 19925794  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||| |||||||||||||||||||||||||||| |||||| ||||| ||||| |||||    
T  19925793 cattgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttgtgctc 19925737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 10620555 - 10620310
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||    
T  10620555 acacaagtgattctataaatagaacccttgtgttgaagcattactgactttttgtgagtgcttgacctaattcacaaaagttgtgaaaccctagccgtcg 10620456  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10620455 ctctctaaaccttgttctctctgaatctctgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgaatagaggcatcgctgctt 10620356  T
Q  212 tgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  10620355 tgctttgctcgtgatcagaaagatttctgctacagaggttctgctc 10620310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 10627637 - 10627392
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||    
T  10627637 acacaagtgattctataaatagaacccttgtgttgaagcattactgactttttgtgagtgcttgacctaattcacaaaagttgtgaaaccctagccgtcg 10627538  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10627537 ctctctaaaccttgttctctctgaatctccattggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgaatagaggcatcgctgctt 10627438  T
Q  212 tgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  10627437 tgctttgctcgtgatcagaaagatttctgctacagaggttctgctc 10627392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 869570 - 869826
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  869570 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaaacattactaaccttttgtgagtgcttaacctaattcacaaaagttgtgaaac 869669  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  869670 cctagccgccgctctctaaacatagttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 869769  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| | |||||||||    
T  869770 catcgctgctttgctttgctcgtgatcagaaatatttcttctacaaatgttctgctc 869826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 5714921 - 5715178
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttct-gagtgcttaacctaattcacaaaagttgtgaaa 99  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| | |||||||||||||||||||||||||||||||||    
T  5714921 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaaacattactaaccttttgttgagtgcttaacctaattcacaaaagttgtgaaa 5715020  T
Q  100 ccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 199  Q
    |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5715021 ccctagccgccgctctctaaacgtagttctctctgaatctccgttggaattggctagcactggtcatcggagaagttctgttcgtgtggactgagtagag 5715120  T
Q  200 gcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  5715121 gcatcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 5715178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 28392389 - 28392144
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  28392389 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagctgccg 28392290  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28392289 ctctttaaaccttcttctctctgaatctccgttggaattggctagcaccagtcatcggagaagtactgttcgtgtggactgagtagaggcatcgctgctt 28392190  T
Q  212 tgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||| |||||| ||||| |||||||||||    
T  28392189 tgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 28392144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 5708286 - 5708542
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  5708286 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaaacattactaaccttttgtgagtgcttaacctaattcacaaaagttgtgaaac 5708385  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5708386 cctagccgctgctctctaaacgtagttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 5708485  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||| ||||||  |||| || ||||||||    
T  5708486 catcgctgctttgctttgctcgtgatcagaaatatttcttatacaaagattctgctc 5708542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 4425862 - 4425629
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  4425862 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtaagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 4425763  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4425762 ctctctaaaccttgttctctttgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactaagtagaggcatcgctgctt 4425663  T
Q  212 tgctttgctcgtgatcagaaagatttctgctaca 245  Q
    ||||||||||||||| ||||| |||||| |||||    
T  4425662 tgctttgctcgtgattagaaatatttcttctaca 4425629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 71 - 257
Target Start/End: Original strand, 26964590 - 26964776
Alignment:
Q  71 gcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcgga 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26964590 gcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcgga 26964689  T
Q  171 gaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  26964690 gaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttatgctacaaaggttctgctc 26964776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 47388177 - 47387932
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    ||||||||||||  |||||||||||| ||||| |||| ||||||| ||||||  ||||||||||||||||||||||||||  |||||||||||||||||     
T  47388177 acacaagtgatttgataaatagaaccattgtgctgaaacattactgacttttgttgagtgcttaacctaattcacaaaaggcgtgaaaccctagccgcca 47388078  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   |    
T  47388077 ctctctaaacctttttctcactgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactaagtagaggcatcgctatgt 47387978  T
Q  212 tgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||| | || ||||||| |||||||||||    
T  47387977 tgctttgctcgtgatcagaaacaattatgctacaaaggttctgctc 47387932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 8846163 - 8846282
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8846163 acacaagtgattctataaatagaacccttgtattgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 8846262  T
Q  112 ctctctaaaccttgttctct 131  Q
    |||||||||| |||||||||    
T  8846263 ctctctaaactttgttctct 8846282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 5667315 - 5667198
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    |||||||||||||||||||||||||||||||| |||||||||||  | ||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  5667315 acacaagtgattctataaatagaacccttgtgctgaagcattacatattttttgtgagtgcttaaccttattcacaaaagttgtgaaaccctagccgccg 5667216  T
Q  112 ctctctaaaccttgttct 129  Q
    ||||||||||||||||||    
T  5667215 ctctctaaaccttgttct 5667198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 114 - 253
Target Start/End: Complemental strand, 10676709 - 10676570
Alignment:
Q  114 ctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttg 213  Q
    ||||||||| | ||||||||||||||  ||||| ||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||| | ||     
T  10676709 ctctaaaccctattctctctgaatctctgttggtattggctagaaccggtcatcggagaagttctgtttgtgtggactaaatagaggcatcgctacgtta 10676610  T
Q  214 ctttgctcgtgatcagaaagatttctgctacacaggttct 253  Q
    ||||||||||||||||||| | || ||||||| |||||||    
T  10676609 ctttgctcgtgatcagaaacaattatgctacaaaggttct 10676570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 114 - 253
Target Start/End: Complemental strand, 10890349 - 10890210
Alignment:
Q  114 ctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttg 213  Q
    ||||||||| | ||||||||||||||  ||||| ||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||| | ||     
T  10890349 ctctaaaccctattctctctgaatctctgttggtattggctagaaccggtcatcggagaagttctgtttgtgtggactaaatagaggcatcgctacgtta 10890250  T
Q  214 ctttgctcgtgatcagaaagatttctgctacacaggttct 253  Q
    ||||||||||||||||||| | || ||||||| |||||||    
T  10890249 ctttgctcgtgatcagaaacaattatgctacaaaggttct 10890210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 101 - 232
Target Start/End: Original strand, 35224601 - 35224732
Alignment:
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    |||||||||| ||||||||||| | |||| ||||||| | ||||||||||| ||||||| |||||||| ||||| |||||||||||||||||||||||||    
T  35224601 cctagccgcctctctctaaaccctattctttctgaatatccgttggaattgactagcacgggtcatcgaagaagctctgttcgtgtggactgagtagagg 35224700  T
Q  201 catcgctgctttgctttgctcgtgatcagaaa 232  Q
    ||||| |   ||||||||||||||||||||||    
T  35224701 catcgatatcttgctttgctcgtgatcagaaa 35224732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 10825391 - 10825329
Alignment:
Q  195 tagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10825391 tagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacagaggttctgctc 10825329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 20579488 - 20579418
Alignment:
Q  183 gtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttct 253  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||  |||||| ||||| |||||||    
T  20579488 gtgtggactgaatagaggcatcgctgctttgctttgctcgtgatcagaattatttcttctacaaaggttct 20579418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 10690356 - 10690423
Alignment:
Q  114 ctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgtt 181  Q
    ||||||||| | ||||||||||||||  ||||| ||||||||||| ||||||||||||||||||||||    
T  10690356 ctctaaaccctattctctctgaatctctgttggtattggctagcatcggtcatcggagaagttctgtt 10690423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 10903996 - 10904063
Alignment:
Q  114 ctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgtt 181  Q
    ||||||||| | ||||||||||||||  ||||| ||||||||||| ||||||||||||||||||||||    
T  10903996 ctctaaaccctattctctctgaatctctgttggtattggctagcatcggtcatcggagaagttctgtt 10904063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 35224517 - 35224553
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaa 48  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  35224517 acacaagtggttctataaatagaacccttgtgctgaa 35224553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 6167 - 5911
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6167 tcttgttgtccatacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 6068  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6067 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 5968  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5967 catcgctgctttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 5911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 13183 - 12927
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  13183 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaacagttgtgaaac 13084  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13083 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 12984  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  12983 catcgctgctttgctttgctcgtgatgagaaagatttctgctacaaaggttctgctc 12927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 10571824 - 10571568
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10571824 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 10571725  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10571724 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattgactagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 10571625  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10571624 catcgctgctttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 10571568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 15600142 - 15599886
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15600142 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaaacattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 15600043  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15600042 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 15599943  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15599942 catcgctgctttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 15599886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 10578590 - 10578334
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10578590 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 10578491  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10578490 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 10578391  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||    
T  10578390 catcgctgctttgttttgctcgtgatcagaaaaatttctgctacaaaggttctgctc 10578334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 15606687 - 15606431
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15606687 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaaacattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 15606588  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15606587 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcgaagaagttctgttcgtgtggactgagtagagg 15606488  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15606487 catcgctgctttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 15606431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 15341477 - 15341221
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15341477 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 15341378  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  15341377 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccgatcatcggagaagttctgttcatgtggactgagtagagg 15341278  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||| |||| | ||||| |||||||||||    
T  15341277 catcgctgctttgctttgctcgtgatcagaaatattttttctacaaaggttctgctc 15341221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 15356844 - 15356588
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15356844 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 15356745  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15356744 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccgatcatcggagaagttctgttcgtgtggactgagtagagg 15356645  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||| |||||||||| |||| | ||||| |||||||||||    
T  15356644 catcgctgctttgctttgctcatgatcagaaatattttttctacaaaggttctgctc 15356588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 16481715 - 16481460
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  16481715 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattacttactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 16481616  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
     | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16481615 tc-agccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccagtcatcggagaagttctgttcgtgtggactgagtagagg 16481517  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16481516 catcgctgctttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 16481460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 6111038 - 6111305
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaa-----------ctttttctgagtgcttaacctaattcacaaa 89  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||           |||||| ||||||||||||||||||||||||    
T  6111038 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattaccaaaaaaaaaaaaactttttgtgagtgcttaacctaattcacaaa 6111137  T
Q  90 agttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtgga 189  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6111138 agttgtgaaaccctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtgga 6111237  T
Q  190 ctgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  6111238 ctgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 6111305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 18537956 - 18538200
Alignment:
Q  13 cacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgc 112  Q
    |||||||||||||||||||||||| |||||| ||||||||||  ||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  18537956 cacaagtgattctataaatagaactcttgtgctgaagcattatgaaccttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgtcgc 18538055  T
Q  113 tctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgcttt 212  Q
    ||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18538056 tctctaaaccttggtctctctgaatctccgtttgaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgcttt 18538155  T
Q  213 gctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  18538156 gctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 18538200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 32056292 - 32056059
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||    
T  32056292 acacaagtgattctataaatagaacccttgtgttcaagcattactaactttttgtgattgcttaacctaattcacaaaagttgtgaagccctagccgccg 32056193  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    |||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  32056192 ctctctaaaccttgttctctctgaatttccgttgaaattggctagcaccggtcatcagagaagttctgttcgtgtggaccgagtagaggcatcgctgctt 32056093  T
Q  212 tgctttgctcgtgatcagaaagatttctgctaca 245  Q
    ||||||||||||||||||||||||||||||||||    
T  32056092 tgctttgctcgtgatcagaaagatttctgctaca 32056059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 17196993 - 17196748
Alignment:
Q  14 acaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||| |||||||||||||||||||||||||||||||||||    
T  17196993 acaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtttgtgcttaacttaattcacaaaagttgtgaaaccctagccgccgct 17196894  T
Q  114 ctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttg 213  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  17196893 ctctaaaccttgttctctttgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaagcatcactgttttg 17196794  T
Q  214 ctttgctcgtgatcagaaagatttctgctacacaggttctgctcgt 259  Q
    |||| |||||||||||||| |||||| ||||| |||||||||||||    
T  17196793 ctttactcgtgatcagaaatatttcttctacaaaggttctgctcgt 17196748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 13517769 - 13518013
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    ||||||||  ||||||||||||||||||||||||||||||| ||||||||  | |||||||| |||||||||||||||||||||||||||||||||||||    
T  13517769 acacaagtatttctataaatagaacccttgtgttgaagcatgactaacttaatgtgagtgctaaacctaattcacaaaagttgtgaaaccctagccgccg 13517868  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  13517869 ctctctaaacattgttctctttgaatctccgttggaattggctagcaccggtcatcagagaagttatgttcgtgtggactgagtagaggcatcgctgctt 13517968  T
Q  212 tgctttgctcgtgatcagaaagatttctgctacacaggttctgct 256  Q
    ||||||||||||||||||||| |||||| ||||| ||||||||||    
T  13517969 tgctttgctcgtgatcagaaatatttcttctacaaaggttctgct 13518013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 1646743 - 1646498
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||| || ||    
T  1646743 acacaagtgattctataaatagaacccttgtgttgaagcattactaattttttgtgagtgcttaacctaattaacaaaagttgtgaaaccctagtcgtcg 1646644  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    |||||||||||||||||||| ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| |||    
T  1646643 ctctctaaaccttgttctctttgaatctccgttagaattggcttgcaccggtcatcggagaagttctgttcgtgtggactaagtagaggtatcgctactt 1646544  T
Q  212 tgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||| ||||| |||| | ||||| |||||||||||    
T  1646543 tgctttgctcgtgattagaaatatttattctacaaaggttctgctc 1646498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 83 - 257
Target Start/End: Original strand, 13212331 - 13212505
Alignment:
Q  83 tcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttc 182  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13212331 tcacaaaagttgtgaaaccctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttttgttc 13212430  T
Q  183 gtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  13212431 gtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 13212505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 96 - 257
Target Start/End: Original strand, 8491428 - 8491589
Alignment:
Q  96 gaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagt 195  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8491428 gaaaccctagccgccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccgatcatcggagaagttctgttcgtgtggactgagt 8491527  T
Q  196 agaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  8491528 agaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 8491589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 16201179 - 16201420
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctga-gtgcttaacctaattcacaaaagttgtgaaaccctagccgcc 110  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||   ||||||  ||| ||||||||||||||||||||||||||||||||||||||||||    
T  16201179 acacaagtgattctataaattgaacccttgtgctgaagtattatagacttttgttgaagtgcttaacctaattcacaaaagttgtgaaaccctagccgcc 16201278  T
Q  111 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 210  Q
    |||||||||| || || | |||| ||| |  ||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  16201279 gctctctaaagctagt-cgctctaaatttctgttggaattggcttgcactggtcatcggataagttctgttcgtgtggactgagtagaggcatcactgct 16201377  T
Q  211 ttgctttgctcgtgatcagaaagatttctgctacacaggttct 253  Q
    ||||||| |||||||||||||| |||| ||||||| |||||||    
T  16201378 ttgcttttctcgtgatcagaaacatttatgctacaaaggttct 16201420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 17137343 - 17137505
Alignment:
Q  16 aagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctct 115  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||  ||| ||||    
T  17137343 aagtgattttataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattaacaaaagttgtgaaacactagttgcctctct 17137442  T
Q  116 ctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttct 178  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||    
T  17137443 ctaaactttgttctctttgaatctccgttggaattggctagcaccagtcatcggagaagttct 17137505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 23014590 - 23014348
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttc--tgagtg-cttaacctaattcacaaaagttgtgaaaccctagccg 108  Q
    ||||||||| |||||||||||||||||||||| |||||||||| |||||||||   |||    |||||||||||||  |||||||  |||||||||||||    
T  23014590 acacaagtggttctataaatagaacccttgtgctgaagcattagtaactttttggttgaaacacttaacctaattct-aaaagtta-gaaaccctagccg 23014493  T
Q  109 ccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctg 208  Q
    ||||||||||||||| || ||||||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| |    
T  23014492 ccgctctctaaacctagt-ctctctgaatctctgttggaattggcttgcaccgatcatcggagaagttctgttcgtgtggactgagtagagacatcgccg 23014394  T
Q  209 ctttgctttgctcgtgatcagaaagatttctgctacacaggttctg 254  Q
    |||||||||||||||||||| ||| ||||||  |||| ||||||||    
T  23014393 ctttgctttgctcgtgatcataaatatttcttatacaaaggttctg 23014348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 17780376 - 17780243
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17780376 tcttgttgaccacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 17780277  T
Q  101 cctagccgccgctctctaaaccttgttctctctg 134  Q
    ||||||||||||||||||||| ||||||||||||    
T  17780276 cctagccgccgctctctaaactttgttctctctg 17780243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 19081677 - 19081544
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19081677 tcttgttgaccacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 19081578  T
Q  101 cctagccgccgctctctaaaccttgttctctctg 134  Q
    ||||||||||||||||||||| ||||||||||||    
T  19081577 cctagccgccgctctctaaactttgttctctctg 19081544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 13258661 - 13258746
Alignment:
Q  168 ggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttct 253  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||    
T  13258661 ggagaagttttgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttct 13258746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 101 - 251
Target Start/End: Original strand, 25801243 - 25801392
Alignment:
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||| ||| |||||||||||| | |||||||||||||| ||||| ||||| ||||||||  ||| |||| ||||| ||||||||||||||| |||||||    
T  25801243 cctagtcgctgctctctaaaccctattctctctgaatctccgttgaaattgcctagcacca-tcaccggataagttatgttcgtgtggactgggtagagg 25801341  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggtt 251  Q
    | ||||| | ||||||||||||| |||||||| | |||||||||| |||||    
T  25801342 cgtcgctacattgctttgctcgtaatcagaaacaattctgctacaaaggtt 25801392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 17780246 - 17780165
Alignment:
Q  176 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||| |||||||||||    
T  17780246 tctgttcgtgtggactgagtagaggcatcgctgctttggtttgctcgtgatcagaaatatttcttctacaaaggttctgctc 17780165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 19081547 - 19081466
Alignment:
Q  176 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||| |||||||||||    
T  19081547 tctgttcgtgtggactgagtagaggcatcgctgctttggtttgctcgtgatcagaaatatttcttctacaaaggttctgctc 19081466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 13212277 - 13212330
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcatta 54  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  13212277 tcttgttgttcacacaagtgattctataaatagaacccttgtgttgaagcatta 13212330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 54333264 - 54333200
Alignment:
Q  163 tcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 227  Q
    ||||| |||||| ||||||||||| |||||||||||| ||||| | ||||| |||||||||||||    
T  54333264 tcatcagagaaggtctgttcgtgtagactgagtagagacatcgttactttgttttgctcgtgatc 54333200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 17690698 - 17690442
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17690698 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 17690599  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17690598 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 17690499  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  17690498 catcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 17690442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 27297608 - 27297864
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27297608 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 27297707  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27297708 cctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 27297807  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||||    
T  27297808 catcgctgctttgctttgctcgtgattagaaatatttcttctacaaaggttctgctc 27297864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 29309839 - 29310095
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  29309839 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactaacttttggtgagtgcttaacctaattcacaaaagttgtgaaac 29309938  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29309939 cctagccgccgctctctaaaccttgttatctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 29310038  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||| |||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  29310039 catagctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 29310095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 29316798 - 29317054
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  29316798 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactaacttttggtgagtgcttaacctaattcacaaaagttgtgaaac 29316897  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29316898 cctagccgccgctctctaaaccttgttatctctgaatctctgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 29316997  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||| |||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  29316998 catagctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 29317054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 27380485 - 27380229
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||| |||  |||||||||||||||||||||||||||||||||||    
T  27380485 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaaacattattaacctttggtgagtgcttaacctaattcacaaaagttgtgaaac 27380386  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27380385 cctagccgccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcagagaagttctgttcgtgtggactgagtagagg 27380286  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  27380285 catcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 27380229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 27470868 - 27470612
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||| |||  |||||||||||||||||||||||||||||||||||    
T  27470868 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaaacattattaacctttggtgagtgcttaacctaattcacaaaagttgtgaaac 27470769  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27470768 cctagccgccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcagagaagttctgttcgtgtggactgagtagagg 27470669  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  27470668 catcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 27470612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 17683705 - 17683459
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaac-tttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgcc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| | ||    
T  17683705 acacaagtgattctataaatagaacccttgtgttgaagcattactaacctttttgtgagtgcttaacttaattcacaaaagttgtgaaaccctagtcacc 17683606  T
Q  111 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 210  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17683605 gctctctaaacattgttctctttgaatctccgttggaattggctagcaccggtcatcagagaagttctgttcgtgtggactgagtagaggcatcgctgct 17683506  T
Q  211 ttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||    
T  17683505 ttgctttgctcgtgatcagaaatatttctgctacaaaggttctgctc 17683459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 11652658 - 11652903
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||  ||||    
T  11652658 acacaagtgattctataaatagaacccttgtgttgaagcattactaattttttgtgaatgctgaacctaattcacaaaagttgtgaaaccctagatgccg 11652757  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||    
T  11652758 ctctctaaaccttcttctttctgaatctccgttggaattggctagcaccggtcatcagagaagtacagtttgtgtggactgagtagaggcatcgctgctt 11652857  T
Q  212 tgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||| |||||||||||||| |||||| ||||| |||||||||||    
T  11652858 tgctttactcgtgatcagaaatatttcttctacaaaggttctgctc 11652903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 92 - 257
Target Start/End: Original strand, 27278407 - 27278572
Alignment:
Q  92 ttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggact 191  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27278407 ttgtgaaaccctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggact 27278506  T
Q  192 gagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||||    
T  27278507 gagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctacaaaggttctgctc 27278572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 92 - 257
Target Start/End: Original strand, 27303298 - 27303463
Alignment:
Q  92 ttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggact 191  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27303298 ttgtgaaaccctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggact 27303397  T
Q  192 gagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||||    
T  27303398 gagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctacaaaggttctgctc 27303463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 25536411 - 25536292
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  25536411 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacccaagccgccg 25536312  T
Q  112 ctctctaaaccttgttctct 131  Q
    ||||||||||||||||||||    
T  25536311 ctctctaaaccttgttctct 25536292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 68 - 257
Target Start/End: Original strand, 18336605 - 18336794
Alignment:
Q  68 agtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatc 167  Q
    ||||||| |||||||||| |||||| |||||||  || | ||||||||||||||||||||||||||| |||| ||||| | |||||||||||| |||||     
T  18336605 agtgctttacctaattcataaaagtggtgaaacaatatctgccgctctctaaaccttgttctctctggatctccgttgaagttggctagcaccagtcatt 18336704  T
Q  168 ggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
     |||||||| |||||||||||||||||||||| |||||||   |||||||||| ||||||||||| |||| ||||||| |||||||||||    
T  18336705 agagaagttatgttcgtgtggactgagtagagacatcgctatgttgctttgcttgtgatcagaaacatttatgctacaaaggttctgctc 18336794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 28755386 - 28755282
Alignment:
Q  127 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 226  Q
    ||||||| || |||||||||||||||||||||||| ||||  || ||||||| |||||||||||||||||||| ||| ||| ||||| ||||||||||||    
T  28755386 tctctctcaaccttcgttggaattggctagcaccgatcattaga-aagttctattcgtgtggactgagtagagacattgctactttgatttgctcgtgat 28755288  T
Q  227 cagaaa 232  Q
    ||||||    
T  28755287 cagaaa 28755282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 16393538 - 16393506
Alignment:
Q  200 gcatcgctgctttgctttgctcgtgatcagaaa 232  Q
    |||||||| ||||||||||||||||||||||||    
T  16393538 gcatcgctactttgctttgctcgtgatcagaaa 16393506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 16393621 - 16393546
Alignment:
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcg-ttggaattggctagcaccggtcatcggagaagtt 176  Q
    ||||||||||||||||||||||    ||||||||||||| || ||| |||||||||| || ||||||| ||||||||    
T  16393621 cctagccgccgctctctaaacc-caatctctctgaatctccgtttgaaattggctagtactggtcatcagagaagtt 16393546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 18252979 - 18253235
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18252979 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 18253078  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18253079 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 18253178  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  18253179 catcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 18253235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 18531761 - 18531519
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaac-tttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgcc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18531761 acacaagtgattctataaatagaacccttgtgttgaagcattacgaacctttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgcc 18531662  T
Q  111 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 210  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18531661 gctctctaaaccttcttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactaagtagaggcatcgctgct 18531562  T
Q  211 ttgctttgctcgtgatcagaaagatttctgctacacaggttct 253  Q
    |||||||||||||||||||||| |||||| ||||| |||||||    
T  18531561 ttgctttgctcgtgatcagaaatatttcttctacaaaggttct 18531519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 27309799 - 27309555
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  27309799 acacaagtgattctataaatagaacc-ttgtgttgaagcattactaactttttgtgagtgcttaacctaattaacaaaagttgtgaaaccctagccgccg 27309701  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    |||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||    
T  27309700 ctctctaaaccttgttctctttgaatctccgttgaaattggctagcaccggtcatcggagaggttcttttcgtgtggactgagtagaggcatcgctactt 27309601  T
Q  212 tgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||| |||||| ||||| ||||| |||||    
T  27309600 tgctttgctcgtgatcagaaatatttcttctacaaaggttttgctc 27309555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 9076116 - 9075879
Alignment:
Q  20 gattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9076116 gattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaa 9076017  T
Q  120 accttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgc 219  Q
    |||| ||||||| ||||||| ||||||||||||||||||||| |||| ||||| ||||||||| |||||| |||||||||||| ||||||||||||||||    
T  9076016 acctcgttctctttgaatctccgttggaattggctagcaccgatcataggagacgttctgttcatgtggaatgagtagaggcaacgctgctttgctttgc 9075917  T
Q  220 tcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||| | |||| ||||| || ||||||||    
T  9075916 tcgtgatcagaaataattcttctacaaagattctgctc 9075879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 27130631 - 27130399
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||    
T  27130631 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtaagtgcttaacctaattcacaaaagttgtgaaaccctagcctccg 27130532  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||                
T  27130531 ctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcttcggagaagttctgttcgtgtggactgagtagag------------ 27130444  T
Q  212 tgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
     ||||||||||||||||||||||||| ||||||| |||||||||||    
T  27130443 -gctttgctcgtgatcagaaagatttatgctacaaaggttctgctc 27130399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 16358282 - 16358035
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||    
T  16358282 acacaaatgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccatagctgtcg 16358183  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattgg-ctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 210  Q
    |||||||||| ||||||||| ||||||  |||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  16358182 ctctctaaacgttgttctctttgaatccccgttggaattggtctatcaccggtcttcggagaagttctgttcttgtggactgagtagaggcatcgctgct 16358083  T
Q  211 ttgctttgc-tcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    || |||| | ||||||||| ||| |||||| ||||| |||||||||||    
T  16358082 tttcttttcttcgtgatcataaatatttcttctacaaaggttctgctc 16358035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 96 - 254
Target Start/End: Complemental strand, 22641014 - 22640856
Alignment:
Q  96 gaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagt 195  Q
    ||||||||||||||||||||| |||||   ||||||||||||||  ||||||||||||||||||  |||||  |||||||||||  ||| ||||| ||||    
T  22641014 gaaaccctagccgccgctctcaaaaccccattctctctgaatctctgttggaattggctagcactagtcataagagaagttctgaacgtctggacagagt 22640915  T
Q  196 agaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctg 254  Q
    |||||||||||| | |||||||||||||||||||||| | |||||||||| ||||||||    
T  22640914 agaggcatcgctacgttgctttgctcgtgatcagaaacaattctgctacaaaggttctg 22640856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 36815844 - 36815747
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgc 109  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  |||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  36815844 acacaagtgattctataaatagaacccttgtgttgaagcatgacagacttcttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgc 36815747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 168 - 257
Target Start/End: Complemental strand, 21169500 - 21169411
Alignment:
Q  168 ggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  21169500 ggagaagttctgttcgtgtggactgagtagaggcatcgttgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 21169411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 27276724 - 27276691
Alignment:
Q  72 cttaacctaattcacaaaagttgtgaaaccctag 105  Q
    ||||||||||||||||||||||||||||||||||    
T  27276724 cttaacctaattcacaaaagttgtgaaaccctag 27276691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 23509840 - 23509879
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagca 51  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  23509840 acacaagtggttctattaatagaacccttgtgttgaagca 23509879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 25662054 - 25662090
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaa 48  Q
    ||||||||| || ||||||||||||||||||||||||    
T  25662054 acacaagtggttttataaatagaacccttgtgttgaa 25662090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 5454 - 5198
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5454 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 5355  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5354 cctagccgccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 5255  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  5254 catcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 5198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 8057 - 8313
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8057 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaaacattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 8156  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8157 cctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 8256  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  8257 catcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 8313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 21941614 - 21941872
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaac--tttttctgagtgcttaacctaattcacaaaagttgtgaa 98  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||    
T  21941614 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactaaccctttttgtgagtgcttaacctaattcacaaaagttgtgaa 21941713  T
Q  99 accctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtaga 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  21941714 accctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattagctagcactggtcatcggagaagttctgttcgtgtggactgagtaga 21941813  T
Q  199 ggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21941814 ggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 21941872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 22172434 - 22172690
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||    
T  22172434 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactaatcttttgtgagtgcttaacctaattcacaaaagttgtgaaac 22172533  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22172534 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcactggtcatcggagaagttctgttcgtgtggactgagtagagg 22172633  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  22172634 catcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 22172690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 6095106 - 6095351
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6095106 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 6095205  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  6095206 ctctctaaaccttcttctctctgaatcttcattggaattggctagcaccggtcatcggagaagttttgttcgtgtggactgagtagaggcatcgctgttt 6095305  T
Q  212 tgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||| |||||| ||||| |||||||||||    
T  6095306 tgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 6095351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 15327183 - 15327428
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  15327183 acacaagtgattctataaatagaacctttgtgttgaagcattactaaccttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagctgccg 15327282  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||    
T  15327283 ctctctaaaacttgttctctttgaatctccgttggaattggctagcaccggtcatcggagaatttatgttcatgtggactgagtagaggcatcgctgctt 15327382  T
Q  212 tgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||| |||||| ||||| |||||| ||||    
T  15327383 tgctttgctcgtgatcagaaatatttcttctacaaaggttcagctc 15327428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 15507552 - 15507797
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  15507552 acacaagtgattctataaatagaacctttgtgttgaagcattactaaccttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagctgccg 15507651  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||    
T  15507652 ctctctaaaacttgttctctttgaatctccgttggaattggctagcaccggtcatcggagaatttatgttcatgtggactgagtagaggcatcgctgctt 15507751  T
Q  212 tgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||| |||||| ||||| |||||| ||||    
T  15507752 tgctttgctcgtgatcagaaatatttcttctacaaaggttcagctc 15507797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 28548996 - 28549203
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaa-gttgtgaaa 99  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||    
T  28548996 tcttgctgactacataagtgattctataaatagaacccttgtgttgaagcatgactaacattttgtgagtgcttaacctaattcacaaaaagttgtgaaa 28549095  T
Q  100 ccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 199  Q
    |||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28549096 ccctagccgccgctctctaaacctggttctctctgaatctctgttggaattggctagcactggtcatcggagaagttctgttcgtgtggactgagtagag 28549195  T
Q  200 gcatcgct 207  Q
    ||||||||    
T  28549196 gcatcgct 28549203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 96 - 257
Target Start/End: Original strand, 24643993 - 24644153
Alignment:
Q  96 gaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagt 195  Q
    ||||||| |||||| ||||||||||||| || |||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24643993 gaaaccccagccgctgctctctaaacctagt-ctctctgaatctccgttgtaattggctagcatcggtcatcggagaagttctgttcgtgtggactgagt 24644091  T
Q  196 agaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||| ||||||||||||||||||||| |||| |  |||| |||||||||||    
T  24644092 agaggcatcgctgctctgctttgctcgtgatcagaaatatttgttatacaaaggttctgctc 24644153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 29230377 - 29230568
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctga-gtgcttaacctaattcacaaaagttgtgaaaccctagccgcc 110  Q
    |||||||||||||||||||||||||    ||| |||||||||||| ||||||  | | ||||||||||||| | ||||||||||||||||||||||||||    
T  29230377 acacaagtgattctataaatagaac----gtgatgaagcattactgacttttgttaaagtgcttaacctaactaacaaaagttgtgaaaccctagccgcc 29230472  T
Q  111 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgct 207  Q
    ||||  ||||||||||||||||| ||||| |||||||||||||||| | | || ||| |||||||||| |||||||||||| |||||||||||||||    
T  29230473 gctccttaaaccttgttctctcttaatctccgttggaattggctagta-ctgttatcagagaagttcttttcgtgtggactaagtagaggcatcgct 29230568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 251
Target Start/End: Complemental strand, 24796170 - 24795995
Alignment:
Q  71 gcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcgga 170  Q
    ||||||||||||||||||| ||| | ||  ||||| ||||||||||||| ||| || || ||||||||||||||| |||| |||||||||||||||||||    
T  24796170 gcttaacctaattcacaaa-gttataaa--cctagacgccgctctctaatcctagt-ctttctgaatcttcgttgaaattagctagcaccggtcatcgga 24796075  T
Q  171 gaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggtt 251  Q
    ||||||||||||| ||||||| |||||||||||||||   |||||||| || | |||| ||| |||| ||||||| |||||    
T  24796074 gaagttctgttcg-gtggactcagtagaggcatcgctatgttgctttgatcattatcaaaaacatttatgctacaaaggtt 24795995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 24643583 - 24643624
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcatt 53  Q
    ||||||||| ||||||||||||||||||| || |||||||||    
T  24643583 acacaagtggttctataaatagaacccttatgctgaagcatt 24643624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 32872156 - 32872123
Alignment:
Q  18 gtgattctataaatagaacccttgtgttgaagca 51  Q
    ||||||||||||| ||||||||||||||||||||    
T  32872156 gtgattctataaagagaacccttgtgttgaagca 32872123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 10470 - 10212
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  10470 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaaacatgactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 10371  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10370 cctagccgccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 10271  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctcgt 259  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  10270 catcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctcgt 10212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 1579 - 1319
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaa--tagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaa 98  Q
    |||||||||| |||||||||||||||||||  |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  1579 tcttgttgtccacacaagtgattctataaaaatagaacccttgtgttgaaacatgactaactttttgtgagtgcttaacctaattcacaaaagttgtgaa 1480  T
Q  99 accctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtaga 198  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1479 accctagccgccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtaga 1380  T
Q  199 ggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctcgt 259  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  1379 ggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctcgt 1319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 11535320 - 11535064
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  11535320 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgttagtgcttaacctaattcacaaaagttgtgaaac 11535221  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  11535220 cctagccaccgctctctaaaccttgttctctcttaatcttcgttggaattggctagcaccgatcatcggagaagttctgttcgtgtggactgagtagaga 11535121  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  11535120 catcgctgctttgctttgctcgtgatcagaaagatttctactacaaaggttctgctc 11535064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 11542238 - 11541982
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11542238 tcttgttgtccacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaac 11542139  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  11542138 cctagccgccgttctctaaaccttgttctctcttaatcttcgttggaattggctagcaccgatcaccggagaagttctgttcgtgtggactgagtagagg 11542039  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
     |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  11542038 tatcgctgctttgctttgctcgtgatcagaaagatttctactacaaaggttctgctc 11541982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 29328733 - 29328993
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaa----tagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtg 96  Q
    |||||||||| |||||||||||||||||||    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29328733 tcttgttgtccacacaagtgattctataaaaaaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtg 29328832  T
Q  97 aaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagta 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  29328833 aaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcagagaagttatgttcgtgtgaactgagta 29328932  T
Q  197 gaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  29328933 gaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 29328993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 12739502 - 12739747
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    |||||||||||||||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  12739502 acacaagtgattctataaatagaacctttgttttgtagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccgtagccgccg 12739601  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  12739602 ctctctaaaccttgttctctcttaatctccgttggaattggctagcaccggtcatcggagaagttctgtttttgtggactgagtagaggcatcgctgctt 12739701  T
Q  212 tgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||| |||||| ||||| |||||||||||    
T  12739702 tgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 12739747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 12751819 - 12752064
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| |||||||||    
T  12751819 acacaagtgattctataaatggaaccattgtgttgaagcattactaactttttgtgagtgcttaacctcatttacaaaagttgtgaaaccgtagccgccg 12751918  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12751919 ctctctaaaccttgttctctctaaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggacggagtagaggcatcgctgctt 12752018  T
Q  212 tgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||| |||||| ||||| |||||||||||    
T  12752019 tgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 12752064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 18561982 - 18562238
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    ||||| || |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  18561982 tcttgctgactacacaagtaattctataaatagaacccttgtgttgaagtattactaactttttgtgagtgctaaacctaattcacaaaagttgtgaaac 18562081  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||    
T  18562082 cctagccgccgctctctaaaccttcttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttatgttcgtgtagactaagtagagg 18562181  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||| ||||||||||||||||||| ||| | |||| ||||| |||||||||||    
T  18562182 catcgctgttttgctttgctcgtgatcaaaaataattctactacaaaggttctgctc 18562238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 15153428 - 15153672
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||    
T  15153428 acacaagtgattctataaatagaacccttgtgttgaagcattacaaactttttgtgagtgctaaacctcattcacaaaagttgtgaaacc-tagccgccg 15153526  T
Q  112 ctctctaaacctt-gttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 210  Q
    |||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  15153527 ctctctaaacatttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttttgttcgtgtggactgagtagaggcatcgcttct 15153626  T
Q  211 ttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||| |||| | ||||| |||||||||||    
T  15153627 ttgctttgctcgtgatcagaaatattt-ttctacaaaggttctgctc 15153672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 57 - 257
Target Start/End: Complemental strand, 2653190 - 2652990
Alignment:
Q  57 aactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctag 156  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||    
T  2653190 aactttttatgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgattctctgttggaattggctag 2653091  T
Q  157 caccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgct 256  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2653090 caccagtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacaaaggttctgct 2652991  T
Q  257 c 257  Q
    |    
T  2652990 c 2652990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 61 - 257
Target Start/End: Original strand, 9978837 - 9979033
Alignment:
Q  61 ttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcacc 160  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9978837 ttttgtgagtgcttaacctaattcgcaaaagttgtgaaaccctagccgccgctctctaaaccttcttctctctgaatcttcgttggaattggctagcacc 9978936  T
Q  161 ggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||| | |||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||| | |||| ||||| |||||||||||    
T  9978937 ggtcatcgaaaaagttctgttcgtgtggactaagtagaggcatcgctattttgctttgctcgtgatcagaaatagttctactacaaaggttctgctc 9979033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 11557314 - 11557192
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    ||||||||||||||||||||||||||||| |||||||||| |      ||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  11557314 acacaagtgattctataaatagaacccttatgttgaagcact------ttttggtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 11557221  T
Q  112 ctctctaaaccttgttctctctgaatctt 140  Q
    |||||||||||||||||||||||||||||    
T  11557220 ctctctaaaccttgttctctctgaatctt 11557192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 24850806 - 24850719
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaa 99  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||    
T  24850806 acacaagtgattctataaatagaacccttatgttgaagcattacgaactttttgggagtgcttaacctaattcacaaaagttgtgaaa 24850719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 13393122 - 13393217
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagcc 107  Q
    |||||||||||||||||||||||||||||||| |||| ||||||  | ||||| |||   |||||||||||| |||||||||||||||||||||||    
T  13393122 acacaagtgattctataaatagaacccttgtgctgaaacattacatagtttttgtgaacacttaacctaatttacaaaagttgtgaaaccctagcc 13393217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 18256897 - 18256845
Alignment:
Q  180 ttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaa 232  Q
    |||||||||||| |||| ||| |||||| | ||||||||||||||||||||||    
T  18256897 ttcgtgtggactaagtataggtatcgctacgttgctttgctcgtgatcagaaa 18256845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 24694716 - 24694462
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||    
T  24694716 tcttgttgtccacacaagtgattccataaatagaacccttgtgttgaagcattactaacttttt--gggtgcttaacctaattcacaaaagttgtgaaac 24694619  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24694618 cctagccgccgttctctaaacctcgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 24694519  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24694518 catcgctgctttgctttgctcgtgatcagaaagatttctgctacaaaggttctgctc 24694462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 24701480 - 24701231
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||    
T  24701480 tcttgttgtccacacaagtgattccataaatagaacccttgtgttgaagcattactaacttttt--gggtgcttaacctaattcacaaaagttgtgaaac 24701383  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    ||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24701382 cctagccgccgttctctaaacctcgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctattcgtgtggactgagtagagg 24701283  T
Q  201 catcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||     ||||||||||||||||||||||||||||| |||||||||||    
T  24701282 catcgctgctt-----tgctcgtgatcagaaagatttctgctacaaaggttctgctc 24701231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 19713747 - 19713514
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  19713747 acacaagtgattctataaatagaacccttgtgttgaagcataactaacttttagtgagtgcttaacctaattcacaaaagttgtgaaaccctagctgccg 19713648  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| || ||    
T  19713647 ctctctaaacctttttctctctgaatctccgttggaattggctagcaccagtcatcggagaagttctgttcatgtggactaagtagaggcatcgttgttt 19713548  T
Q  212 tgctttgctcgtgatcagaaagatttctgctaca 245  Q
    ||||||||||||||||||||| | |||| |||||    
T  19713547 tgctttgctcgtgatcagaaataattctactaca 19713514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 18565713 - 18565459
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttg-----aagcattactaactttttc-tgagtgcttaacctaattcacaaaagttgtgaaaccctag 105  Q
    |||||||||||||||||||||||||||||||||||     ||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  18565713 acacaagtgattctataaatagaacccttgtgttgtgttgaagcattacaaacttttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctag 18565614  T
Q  106 ccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggt--catcggagaagttctgttcgtgtggactgagtagaggca- 202  Q
    |||||| ||||||||||||||||| | ||||||| |||||||||||||||||||||||  |||| |||||||| |||| ||||||||||||||||||||     
T  18565613 ccgccggtctctaaaccttgttctatttgaatctccgttggaattggctagcaccggtcacatcagagaagttttgtttgtgtggactgagtagaggcat 18565514  T
Q  203 -tcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
     |||||||||||||||||||||||||||||| |||| | ||||| |||||||||||    
T  18565513 ctcgctgctttgctttgctcgtgatcagaaatattt-ttctacaaaggttctgctc 18565459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 19706430 - 19706230
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaac 100  Q
    |||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||    
T  19706430 tcttgttgaccacacaagtgattctataaatagaacccttatgttgaagcataactaacttttagtgagtgcttaacctaattcacaaaagttgtgaaac 19706331  T
Q  101 cctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagg 200  Q
    |||||||||||||||||||||||| |||||||| ||| |  |||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  19706330 cctagccgccgctctctaaaccttcttctctctaaatatctgttgaaattggctagcaccggtcatcggagaagttatgttcgtgtggactaagtagagg 19706231  T
Q  201 c 201  Q
    |    
T  19706230 c 19706230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 938793 - 938567
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    |||||||||||| ||||||| |||||||||||| |||| ||  || | || ||   |||||| ||||||||||||||| ||| | ||  |||||||||||    
T  938793 acacaagtgattttataaattgaacccttgtgtggaaggat--cttagttgttga-agtgctaaacctaattcacaaa-gttataaa--cctagccgccg 938700  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatc---ggagaagttctgttcgtgtggactgagtagaggcatcgctg 208  Q
    ||||||||||||| |||||||| ||||| ||||||||| |||||||||||||||||   | |||||||||||||||||||| |||||||| ||||||||     
T  938699 ctctctaaaccttattctctct-aatctccgttggaatcggctagcaccggtcatcatcgtagaagttctgttcgtgtggattgagtagaagcatcgcta 938601  T
Q  209 ctttgctttgctcgtgatcagaaagatttctgct 242  Q
    | ||| |||| | |||||| |||| | |||||||    
T  938600 cgttgttttgtttgtgatcggaaacaattctgct 938567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 39539653 - 39539732
Alignment:
Q  176 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgc 255  Q
    |||||| ||||||||||||||||| ||||||| | |||||||||| |||||||||||   |||||||||| |||||||||    
T  39539653 tctgtttgtgtggactgagtagagacatcgctacgttgctttgcttgtgatcagaaactattctgctacaaaggttctgc 39539732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 39539549 - 39539583
Alignment:
Q  14 acaagtgattctataaatagaacccttgtgttgaa 48  Q
    ||||||| |||||||||||||||||||||||||||    
T  39539549 acaagtggttctataaatagaacccttgtgttgaa 39539583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 22791080 - 22790835
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 111  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22791080 acacaagtgattctataaatagaacccttgttttgtagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccg 22790981  T
Q  112 ctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 211  Q
    ||||||| || ||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22790980 ctctctatactttgttctctttgaatctccgtgggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgcttctt 22790881  T
Q  212 tgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||| |||||||| |||||| ||||| |||||||||||    
T  22790880 tgctttgctcgtcatcagaaatatttcttctacaaaggttctgctc 22790835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 25 - 257
Target Start/End: Original strand, 41664739 - 41664970
Alignment:
Q  25 tataaatagaacccttgtgttgaagcattactaactttttct-gagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacct 123  Q
    |||||||| ||||||||||||||||||||| ||| ||| | | ||    |||||||||||||||||||||||||||||||||||| || |||||||||||    
T  41664739 tataaata-aacccttgtgttgaagcattattaaatttatgttgaacatttaacctaattcacaaaagttgtgaaaccctagccgtcgttctctaaacct 41664837  T
Q  124 tgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgt 223  Q
    ||||||||| |||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||| |||||||| | ||||| |||||||    
T  41664838 tgttctctccgaatctccgttggaattggctagcaccgatcatcggggaa-ttctgttcgtgtggactaagtagaagcatcgctacgttgctatgctcgt 41664936  T
Q  224 gatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||||| | |||| ||||| | |||||||||    
T  41664937 gatcagaaacaattctactacaaatgttctgctc 41664970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 21329502 - 21329374
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaa--tagaacccttgtgttgaagcattactaactttttctgagtgcttaacctaattcacaaaagttgtgaa 98  Q
    |||||||||| |||||||||||||||||||  |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21329502 tcttgttgtccacacaagtgattctataaaaatagaacccttgtgttgaaacattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaa 21329403  T
Q  99 accctagccgccgctctctaaaccttgtt 127  Q
    ||||||||||||||||||||||| |||||    
T  21329402 accctagccgccgctctctaaactttgtt 21329374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 22 - 256
Target Start/End: Original strand, 18620805 - 18621040
Alignment:
Q  22 ttctataaatagaacccttgtgttgaagcattactaactttttct-gagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaa 120  Q
    |||||||||||||||||||||| | |||||||||| ||||||| | ||   |||||||||||||| | ||||||||||| |||||  ||| |||||||||    
T  18620805 ttctataaatagaacccttgtgctaaagcattactgactttttgttgaacacttaacctaattcaaagaagttgtgaaatcctagttgccactctctaaa 18620904  T
Q  121 ccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgct 220  Q
    | ||||||| |||||||||  ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| |||| |    ||||||| ||    
T  18620905 ctttgttctatctgaatctctgttggaattggctagcaccagtcatcggagaaattctgttcgtgtggactgagtggagacatcaccatgttgctttact 18621004  T
Q  221 cgtgatcagaaagatttctgctacacaggttctgct 256  Q
    |||||||| ||| | |||||||| | ||||| ||||    
T  18621005 cgtgatcaaaaacaattctgctataaaggttatgct 18621040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 27353433 - 27353538
Alignment:
Q  127 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 226  Q
    ||||||||||||| || ||||||||||| | |||||||||| |||||||||| | |||||||||||||||||||||||||| | ||||||||||||||||    
T  27353433 tctctctgaatctccgctggaattggctcgtaccggtcatcagagaagttctctacgtgtggactgagtagaggcatcgctacgttgctttgctcgtgat 27353532  T
Q  227 cagaaa 232  Q
    ||||||    
T  27353533 cagaaa 27353538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 18822935 - 18822967
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgt 44  Q
    ||||||| |||||||||||||||||||||||||    
T  18822935 acacaagggattctataaatagaacccttgtgt 18822967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 19261 - 19506
Alignment:
Q  1 tcttgttgtctacacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctga-gtgcttaacctaattcacaaaagttgtgaaa 99  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  19261 tcttgttgcccacacaagtgattctataaatagaacccttgtgttgaaacattactaactttttgtgaagtgcttaacctaattcacaaaagttgtgaaa 19360  T
Q  100 ccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 199  Q
    ||||||||||| |||||||||| | ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19361 ccctagccgccactctctaaacgtagttctctctgaatctccgttgtaattggctagcaccggtcatcggagaagttctgttcatgtggactgagtagag 19460  T
Q  200 gcatcgctgctttgctttgctcgtgatcagaaagatttctgctaca 245  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||    
T  19461 gcatcgctgctttgctttgctcgtgatcagaaatatttcttctaca 19506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1199 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: scaffold1199
Description:

Target: scaffold1199; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 80 - 330
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttc-----tgagtgcttaacctaattcacaaaagttgtgaaaccctagc 106  Q
    |||||||| ||||||||||||||||||||||||||||||||||  ||||||||      |||||||||||||||||||||||||||||||||||| ||||    
T  80 acacaagttattctataaatagaacccttgtgttgaagcattatgaactttttgaaaagtgagtgcttaacctaattcacaaaagttgtgaaaccatagc 179  T
Q  107 cgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgc 206  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  180 cgccgctatctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagacatcgc 279  T
Q  207 tgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||| ||||||||||| |||||| ||||| |||||||||||    
T  280 tgctttgctttgcttgtgatcagaaatatttcttctacaaaggttctgctc 330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 6482 - 6733
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctg------agtgcttaacctaattcacaaaagttgtgaaaccctag 105  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||| |       ||||||||||||||||||||||||| ||||||||||||    
T  6482 acacaagtgattctataaatagaacccttgtgttgaagcatgacgaacttttttttttttttagtgcttaacctaattcacaaaagtggtgaaaccctag 6581  T
Q  106 ccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcg 205  Q
    |||||||||||||||||||||||||| ||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  6582 ccgccgctctctaaaccttgttctctttgaatctccattggaattggctagcaccagtcatcggagaagttctgttcgtgtggactaagtagaggcatcg 6681  T
Q  206 ctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||  |||||||||||||||||| |||| | |||| ||||| |||||||||||    
T  6682 ctattttgctttgctcgtgatctgaaataattctactacaaaggttctgctc 6733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 229638 - 229389
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttctg----agtgcttaacctaattcacaaaagttgtgaaaccctagcc 107  Q
    ||||||||||||||||||||||||||||| ||||||||||| || |||||||| |     ||||||||||||||||||||||||| ||||||||||||||    
T  229638 acacaagtgattctataaatagaacccttctgttgaagcatgacgaacttttttttttttagtgcttaacctaattcacaaaagtggtgaaaccctagcc 229539  T
Q  108 gccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgct 207  Q
    |||||||||||||||||||||||| ||||||| | ||| || ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||    
T  229538 gccgctctctaaaccttgttctctttgaatctccattgaaactggctagcaccggtcatcggagaagttctgttcatgtggactaagtataggcatcgct 229439  T
Q  208 gctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
      ||||||||||||||||||||||| | ||||  |||| |||||||||||    
T  229438 attttgctttgctcgtgatcagaaataattctagtacaaaggttctgctc 229389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 125 - 257
Target Start/End: Original strand, 4313 - 4445
Alignment:
Q  125 gttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtg 224  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4313 gttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtg 4412  T
Q  225 atcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||| |||||| ||||| |||||||||||    
T  4413 atcagaaatatttcttctacaaaggttctgctc 4445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 107495 - 107249
Alignment:
Q  12 acacaagtgattctataaatagaacccttgtgttgaagcattactaactttttct-gagtgcttaacctaattcacaaaagttgtgaaaccctagccgcc 110  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||||| ||||| | ||   |||||  ||||||||||||||||||||||||||||||||    
T  107495 acacaagtggttctgtaaatagaacccttgtgctgaagcattactaagtttttgttgaacacttaagataattcacaaaagttgtgaaaccctagccgcc 107396  T
Q  111 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 210  Q
     |||| |||| |||||||||||||||||| ||||||||||||||  ||| |||||||||||||||||||||||| ||||||  |||||||||| ||| |     
T  107395 actctttaaatcttgttctctctgaatctccgttggaattggctgacactggtcatcggagaagttctgttcgtttggactatgtagaggcattgctacg 107296  T
Q  211 ttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||| ||||||  ||| | |||| ||||| ||||| |||||    
T  107295 ttgctttgcttgtgatcgtaaacaattcttctacaaaggttatgctc 107249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 141 - 257
Target Start/End: Complemental strand, 29302 - 29186
Alignment:
Q  141 cgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctg 240  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29302 cgttggaattggctagcaccggccatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctg 29203  T
Q  241 ctacacaggttctgctc 257  Q
    ||||| |||||||||||    
T  29202 ctacaaaggttctgctc 29186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 115 - 257
Target Start/End: Original strand, 26276 - 26418
Alignment:
Q  115 tctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgc 214  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26276 tctaaactttgttctctctgaatctttgttggaattggctagcaccggtcatcggagaagttttgttcgtgtggactgagtagaggcatcgctgctttgc 26375  T
Q  215 tttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    ||||||| |||| ||||| |||| | ||||| |||||||||||    
T  26376 tttgctcatgataagaaaaatttatactacaaaggttctgctc 26418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 96 - 254
Target Start/End: Complemental strand, 1143 - 986
Alignment:
Q  96 gaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagt 195  Q
    |||||||||  || |||||||||||| | || |||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1143 gaaaccctaatcgtcgctctctaaacttagt-ctctctgaatcaccgttggaattggctagcaccggtcatcggagaagttatgttcgtgtggactgagt 1045  T
Q  196 agaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctg 254  Q
    |||| |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||    
T  1044 agagacatcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctg 986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 68 - 253
Target Start/End: Original strand, 62 - 247
Alignment:
Q  68 agtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatc 167  Q
    ||||||| |||||||||| |||||| |||||||  || ||||||||||||||||||||||||||||| |||| ||||| | |||||||||||| |||||     
T  62 agtgctttacctaattcataaaagtggtgaaacagtatccgccgctctctaaaccttgttctctctggatctccgttgaagttggctagcaccagtcatt 161  T
Q  168 ggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttct 253  Q
     |||||||| ||||||| |||||||||||||| |||||||   ||  |||||| ||||| ||||| |||| ||||||| |||||||    
T  162 agagaagttatgttcgtatggactgagtagagacatcgctatgtttgtttgcttgtgattagaaacatttttgctacaaaggttct 247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 3870 - 3922
Alignment:
Q  205 gctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  3870 gctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 3922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 87829 - 87916
Alignment:
Q  169 gagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacacaggttctgctc 257  Q
    |||||||| ||||||| |||||| ||||||||||||||| |||| ||||||| ||||||| ||| | || | ||||| |||||||||||    
T  87829 gagaagttatgttcgt-tggactaagtagaggcatcgctactttactttgcttgtgatcataaacaattatactacaaaggttctgctc 87916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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