View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6622_low_26 (Length: 285)

Name: NF6622_low_26
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6622_low_26
NF6622_low_26
[»] chr4 (1 HSPs)
chr4 (1-285)||(30878070-30878361)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 30878361 - 30878070
Alignment:
Q  1 cgactcacttatattttttcatatactagtaaaatataata-------tagagaagtttaaggataatttaaatgattttagtatggatatgatcctctc 93  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30878361 cgactcacttatattttttcatatactagtaaaatataatacgtttaatagagaagtttaaggataatttaaatgattttagtatggatatgatcctctc 30878262  T
Q  94 acatggatttatagtggattgtgtgacgattttattgaactaaacttaaaaattattattaatatttgattctatatgattgtagtatgcataaactatt 193  Q
    || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30878261 acctggatttatagtggattgtgtgacgattttattgaactaaaattaaaaattattattaatatttgattctatatgattctagtatgcataaactatt 30878162  T
Q  194 gaaatcaagcaaatttttcaacattttacatgtaaagaaagtaccaatgccacaccttacatcttattggtacaagaacttctccaatataa 285  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30878161 gaaatcaagcaaatttttcaacattttacaagtaaagaaagtaccaaggccacaccttacatcttattggtacaagaacttctccaatataa 30878070  T

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