View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6622_low_27 (Length: 263)
Name: NF6622_low_27
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6622_low_27 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 38 - 263
Target Start/End: Complemental strand, 27548550 - 27548325
Alignment:
| Q |
38 |
cctcattctatatgttttcctacctttgaagcatggtttatctatctatagtccatgactgtgtatcttttctactctctaacttttgtctactgaaatt |
137 |
Q |
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| T |
27548550 |
cctcattctatatgttttcctacctttgaagcatggtttatctatctatagtccatgactgtgtatcttttctactctctaacttttgtctactcaaatt |
27548451 |
T |
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| Q |
138 |
ttagatatatacctgtaactctaaatttccaaaatccattgatcagtttgtacttatcaaattttatcattctattttctaattatggatttcaagaaac |
237 |
Q |
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| T |
27548450 |
ttagatatatacctctaactctaaatttccaaaattcattgatcagtttgtacttatcagattttatcattctattttctaattatgtatttcaagaaac |
27548351 |
T |
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| Q |
238 |
caaattcactgtacaatgaccttctt |
263 |
Q |
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| T |
27548350 |
caaattcactgttcaatgaccttctt |
27548325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 195
Target Start/End: Original strand, 27946224 - 27946357
Alignment:
| Q |
48 |
tatgttttcctacctttgaagcatggtttatctatctatagtccatgactgtgtatcttttctactctctaacttttgtctactgaaattttagatatat |
147 |
Q |
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| T |
27946224 |
tatgttttcctacctttgatgcatggtttatctat----agtccatgactgt--atcttttctactttctatgttttgtttactgaaattttagata--- |
27946314 |
T |
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| Q |
148 |
acctgtaactctaaatttccaaaatccattgatcagtttgtacttatc |
195 |
Q |
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| T |
27946315 |
-----tacctctaaatttccaaaattcattgatcagtttgtacttatc |
27946357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 202
Target Start/End: Original strand, 27437863 - 27438001
Alignment:
| Q |
50 |
tgttttcctacctttgaagcatggtttatctatctatagtccatgactgtgtatcttttctactctctaacttttgtctactgaaattttagatatatac |
149 |
Q |
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|||||| |||||||||| ||||||||||||| | ||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
27437863 |
tgttttgctacctttgatgcatggtttatctgt----agtccatgactgt--atcttttctactctctaagttttgtttactgaaattttagata----- |
27437951 |
T |
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| Q |
150 |
ctgtaactctaaatttccaaaatccattgatcagtttgtacttatcaaatttt |
202 |
Q |
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| T |
27437952 |
---tacctctaaatttccaaaatttattgatcagtttgtacttatcagatttt |
27438001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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