View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6622_low_3 (Length: 931)
Name: NF6622_low_3
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6622_low_3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 841; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 841; E-Value: 0
Query Start/End: Original strand, 1 - 931
Target Start/End: Original strand, 3809689 - 3810600
Alignment:
| Q |
1 |
aaaacgatctacctttcgatctctatctcttgctctgaaaattcctaagacatcattgataaggctgcaaaagtccggagttatacgacgccattcaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3809689 |
aaaacgatctacctttcgatctctatctcttgctctgaaaattcctaagacatcattgataaggctgcaaaagtccggagttatacgacgccattcaagt |
3809788 |
T |
|
| Q |
101 |
acacttaagccatatttaaaagaggaaaatatgattgctcgtttaaggttttgtttgtcaatgctcgaccgtaacagctcgcctcatgatccgaagttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3809789 |
acacttaagccatatttaaaagaggaaaatatgattgctcgtttaaggttttgtttgtcaatgctcgaccgtaacagctcgcctcatgatccgaagttta |
3809888 |
T |
|
| Q |
201 |
cttccatgcacaatactgtgtttatcgatgagaaatggttctatattacaaaaaataaaaccaattactatttgcattcggaagaggaggagccacaccg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3809889 |
cttccatgcacaatactgtgtttatcgatgagaaatggttctatattacaaaaaataaaaccaattactatttgaattcggaagaggaggagccacaccg |
3809988 |
T |
|
| Q |
301 |
agcatgtcaaagcaaaatttttattggtaagcttatgtttgtagctgcagtggccagacccaggtttgacaacgaaggaaaggagacattctcagggaag |
400 |
Q |
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| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3809989 |
aacatgtcaaagcaaaaattttattggtaagcttatgtttgtagctgcagtggccagacccaggtttgacaacgaaggaaaggagacattctcagggaag |
3810088 |
T |
|
| Q |
401 |
attggtatatttccatttgtgtatgaacagccagctagaagaagcagtgtcaacagagctgcagggactatagaaaggaaacctataacttctgtgacaa |
500 |
Q |
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| T |
3810089 |
attggtatatttccatttgtgtatgaacagccagctagaagaagcagtgtcaacagagctgcagggactatagaaaggaaacctataacttctgtgacaa |
3810188 |
T |
|
| Q |
501 |
gagaggtgaataaaactttcatgatgagcaaaatcttaccagcccttaagaattgctggccaatagaagatgtagggaagacaattttcattcaacaaga |
600 |
Q |
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| T |
3810189 |
gagaggtgaataaaactttcatgatgagcaaaatcttaccagcccttaagaattgctggccaatagaagatgtagggaagacaattttcattcaacaaga |
3810288 |
T |
|
| Q |
601 |
caatgcaaagtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattca |
700 |
Q |
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| T |
3810289 |
gaatgcaaagtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagatgggtttg-------------------acctccgaattca |
3810369 |
T |
|
| Q |
701 |
cccgatttgaatgtcttggacttgggctttttcaatgccattcagtctttacagcagaaagaatcaatgaagtcaattgatgatcttattcatgcagttc |
800 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810370 |
cccgatttgaatgtcttggacttgggctttttcaatgccattcagtatttacagcagaaagaatcaatgaagtcaattgatgatcttattcatgcagttc |
3810469 |
T |
|
| Q |
801 |
agaaagcatttgatgaatattcatgtgtacaatccgataaaaaattttatactctacaaacatgcatggttgaaataatgaagaataagggatcaaacag |
900 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810470 |
agaaagcattcgatgaatattcatgtgtacaatccgataaaaaaatttatactctacaaacatgcatggttgaaataatgaagaataagggatcaaacag |
3810569 |
T |
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| Q |
901 |
gtacaaaactcctcacaagaagaaagatatg |
931 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
3810570 |
gtacaaaactcctcacaagaagaaagatatg |
3810600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 744
Target Start/End: Original strand, 1329564 - 1329651
Alignment:
| Q |
657 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
744 |
Q |
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| T |
1329564 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
1329651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 638 - 726
Target Start/End: Original strand, 45489216 - 45489304
Alignment:
| Q |
638 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttggg |
726 |
Q |
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|||||| ||||||| ||||| ||||||||||||||||||||| |||||||| || || || |||||||||||||| ||||| ||||| |
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| T |
45489216 |
ttttgtagagcagcttctgaaggtgggtttgacattcgattgatatgtcaaccacctaactctcccgatttgaatgttttggatttggg |
45489304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 744
Target Start/End: Complemental strand, 42539990 - 42539903
Alignment:
| Q |
657 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
744 |
Q |
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|||||||||| ||||||||| |||| ||||||||||| ||||| || || | |||||||| ||| | ||||| |||| ||||||||| |
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| T |
42539990 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
42539903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 638 - 714
Target Start/End: Original strand, 8187133 - 8187209
Alignment:
| Q |
638 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgt |
714 |
Q |
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|||||| ||||||| ||||| ||||||||||||||||||||| ||| ||| || ||||| |||||||||||||| |
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| T |
8187133 |
ttttgtagagcagcttttgaaggtgggtttgacattcgattgatatgttaacgacctaattctcccgatttgaatgt |
8187209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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