View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6622_low_34 (Length: 244)
Name: NF6622_low_34
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6622_low_34 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 38878526 - 38878752
Alignment:
| Q |
18 |
gttctgccaagaaatttgttgttaaatgatgtttctttgtttctaataattgcggtaaatggtgatagtttcattttgaatattaccggatgagaaagtg |
117 |
Q |
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| T |
38878526 |
gttctgccaagaaatttgttgttaaatgatgtttctttgtttctaataattgcggtaaatggtgatagtttcattttgaatattaccggatgagaaagtg |
38878625 |
T |
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| Q |
118 |
tagaattcgacgggccaaaaaactgttgctttaattgcacatgaggcgactgttggttgttgggctgctcggaagtccttggaaggcttagtaaataacg |
217 |
Q |
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| T |
38878626 |
tagaattcgacgggccaaaaaactgttgctttaattgcacatgaggcgactgttggttgttgggctgctcggaagtccttggaaggcttagtaaataacg |
38878725 |
T |
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| Q |
218 |
atgtgcttttattgtacgattctttat |
244 |
Q |
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| T |
38878726 |
atgtgcttttattgtacgattctttat |
38878752 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 180
Target Start/End: Original strand, 16630379 - 16630500
Alignment:
| Q |
59 |
tctaataattgcggtaaatggtgatagtttcattttgaatattaccggatgagaaagtgtagaattcgacgggccaaaaaactgttgctttaattgcaca |
158 |
Q |
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| T |
16630379 |
tctaatacttgtggtaaatggcgatatttttttttcgaatattaccgattgagaaaatctagaattcaacgggccaaatacctgttgcttggattgcaca |
16630478 |
T |
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| Q |
159 |
tgaggcgactgttggttgttgg |
180 |
Q |
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| T |
16630479 |
tcaggtggctgttgcttgttgg |
16630500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 14202164 - 14202099
Alignment:
| Q |
39 |
ttaaatgatgtttctttgtttctaataattgcggtaaatggtgatagtttcattttgaatattacc |
104 |
Q |
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| T |
14202164 |
ttaaatgatgtttctttgtttttaataattgtggaaaacggttatagtttcattttgaaaattacc |
14202099 |
T |
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