View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6622_low_35 (Length: 240)
Name: NF6622_low_35
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6622_low_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 24264733 - 24264957
Alignment:
| Q |
1 |
ctttaatctacttcaatagatattccctttgtcaaacatagagtttagataaccttctaaagtgcttattaattattattttctcaaatataagtactta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24264733 |
ctttaatctacttcaatagatattccctttgtcaaacatagagtttagataaccttctaaagtgcttattaattattattttctcaaatataagtactta |
24264832 |
T |
|
| Q |
101 |
tgctgaaaacttgtataaattttatactgtagatagtgacaaaagagggttcatagcagatgaaataacaaagcttggtaaagtaaatgttgtctctacg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24264833 |
tgctgaaaacttgtataaattttatactgtagatagtgacaaaagagggctcatagcagatgaaataacaaagcttggtaaagtaaatgttgtctctacg |
24264932 |
T |
|
| Q |
201 |
taggtttgattgattatgtcatatc |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
24264933 |
taggtttgattgattatgtcatatc |
24264957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 19995142 - 19995057
Alignment:
| Q |
106 |
aaaacttgtataaattttatactgtagatagtgacaaaagagggttcatagcagatgaaataacaaagcttggtaaagtaaatgtt |
191 |
Q |
| |
|
|||||||| | | |||||| | ||||||||||| ||| ||| ||||||||||||| || || ||||||||||||||| ||||||| |
|
|
| T |
19995142 |
aaaacttgaacacattttacattgtagatagtggcaagagaaggttcatagcagaggagttagcaaagcttggtaaaggaaatgtt |
19995057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University