View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6622_low_7 (Length: 768)
Name: NF6622_low_7
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6622_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 251 - 752
Target Start/End: Original strand, 46944271 - 46944776
Alignment:
| Q |
251 |
caacgaaggtgatgacgtggattgaagaatgggagacacgtgttagggttatgaataaaggtagttgaggggcggtgctaaaatgcgcagggtatgcgta |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46944271 |
caacgaaggtgatgacgtggattgaagaatgggagacacgtgttagggttatgaataaaggtagttgaggggcggtgctaaaatgcgcagggtatgcgta |
46944370 |
T |
|
| Q |
351 |
tgagtgtatgtaagtgaaatctaacgtgcataggataagataagatcatagtactaaacagttaaaaatcgttaattatgctcagattagactattacga |
450 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46944371 |
tgagtgtatgtaaatgaaatctaacgtgcataggataagataagatcatagtactaaacagttaaaaatcgttaattatgctcagattagactattacga |
46944470 |
T |
|
| Q |
451 |
tcatcatttctttatttaaaagcaaaagaagaagaaaaacacctactacactactattagatttttatatgaaagtgcaaataacagtgttggatatttg |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46944471 |
tcatcatttctttatttaaaagcaaaagaagaagaaaaacacctactacactactattagatttttatatgacagtgcaaataacagtgttggatatttg |
46944570 |
T |
|
| Q |
551 |
gatttttcacacaaaacaacctttctttatatatcaaattatcaatcactccactcaaaatggatctgtcatttgtgttctgttctttctttttctggta |
650 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46944571 |
gatttttcacacaaaacaacctttctttatatatcaaattatcaatcactccactcaaaatggatctgtcatttgtgttctgttctttctttttctggta |
46944670 |
T |
|
| Q |
651 |
gaaatcatttgtgtcattctcttaatattaacattaactactatacacttgttcatattttaaaaatgctattctatataat----atgcatttccttga |
746 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
46944671 |
gaaatcatttgtgtcattctcttaatattaactttaactactatacacttgttcatattttaaaaatgctatactatataatatgcatgcatttccttga |
46944770 |
T |
|
| Q |
747 |
tatatg |
752 |
Q |
| |
|
|||||| |
|
|
| T |
46944771 |
tatatg |
46944776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 46944027 - 46944146
Alignment:
| Q |
11 |
cagagagttctttccaaaggagggtgcaagaagtcataagggaggtttgacgttgaaaatcatcgaaacttggttgagttaactcggttaactcaccagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46944027 |
cagagagttctttccaaaggagggtgcaagaagtcataagggaggtttgacgttgaaaatcatcgaaacttggttgagttaactcggttaactcaccagg |
46944126 |
T |
|
| Q |
111 |
atcggggattgaccccatag |
130 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
46944127 |
atcggggattgaccccatag |
46944146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University