View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6622_low_9 (Length: 617)
Name: NF6622_low_9
Description: NF6622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6622_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 546; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 13 - 599
Target Start/End: Original strand, 42714605 - 42715191
Alignment:
| Q |
13 |
gagaactggtgttattgtcaattcagtatttatgatcacaaaatatcaggtttatttcattttttacttttaatttcatccaccttaaaacattcgaaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42714605 |
gagaactggtgttattgtcaattcagtatttatgatcacaaaatgtcaggtttatttcattttttacttttaatttcatccaccttaaaacattcgaaaa |
42714704 |
T |
|
| Q |
113 |
ctgaacattgcatattcccttccatcttgagagaactcgtgcattgcaaataccatnnnnnnncctttattgcaatgggaagaaaaagaaatacatcact |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42714705 |
ctgaacattgcatattcccttccatcttgagagaactcgtgcattgcaaataccataaaaaaacctttattgcaatgggaagaaaaagaaatacatcact |
42714804 |
T |
|
| Q |
213 |
tttaatagttgatagcaaatgtattattatgaaactaatacctcactaatgtggattgttaagtgcaataggtatcccaacaacatagttctttccattg |
312 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42714805 |
tttaatagttggtagcaaatgtattattatgaaactaatacctcactaatgtggattgttaagtgcaataggtatcccaacaacatagttctttccattg |
42714904 |
T |
|
| Q |
313 |
gtccaaattaactttccaaagacacaatcagacttatccttactttgcagcttgaaggttaatgtaactctgaactccttcttttcgcccttttgattaa |
412 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42714905 |
gtccaaattaactttccaaagacataatcagacttatccttactttgcagcttgaaggttaatgtaactctgaactccttcttttcgcccttttgattaa |
42715004 |
T |
|
| Q |
413 |
agctcagtgtcttaggctcaacataaattacatattccgggggagcttggatttgtgcggtatatgtgcttggagaccccacgttggtaagagtacgagt |
512 |
Q |
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| T |
42715005 |
agctcagcgtcttaggctcaacataaattacatattccgggggagcttggatttgtgcggtatatgtgcttggagaccccacgtttgtaagagtacgagt |
42715104 |
T |
|
| Q |
513 |
aacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttgaaatctttcaaattgaaggattttggacaagt |
599 |
Q |
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| T |
42715105 |
aacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttgaaatctttcaaattgaaggattttggacaagt |
42715191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 479 - 599
Target Start/End: Original strand, 42741988 - 42742108
Alignment:
| Q |
479 |
tgcttggagaccccacgttggtaagagtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttgaaatctttcaa |
578 |
Q |
| |
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||||||||||||| || ||||| | |||||||||||| || | || ||||| | ||||||||| |||||||||| |||||||| |||||||| | || |
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| T |
42741988 |
tgcttggagacccgacattggttacagtacgagtaacgttcaaaggctgtccaattttaaagtcaggaattgtgatggctggataattgaaatcaattaa |
42742087 |
T |
|
| Q |
579 |
attgaaggattttggacaagt |
599 |
Q |
| |
|
|||||||||||| |||||||| |
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| T |
42742088 |
attgaaggatttgggacaagt |
42742108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 479 - 599
Target Start/End: Original strand, 42751347 - 42751467
Alignment:
| Q |
479 |
tgcttggagaccccacgttggtaagagtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttgaaatctttcaa |
578 |
Q |
| |
|
||||||||||||| || ||||| | |||||||||||| || | || ||||| | ||||||||| |||||||||| |||||||| |||||||| | || |
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| T |
42751347 |
tgcttggagacccgacattggttacagtacgagtaacgttcaaaggctgtccaattttaaagtcaggaattgtgatggctggataattgaaatcaattaa |
42751446 |
T |
|
| Q |
579 |
attgaaggattttggacaagt |
599 |
Q |
| |
|
|||||||||||| |||||||| |
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| T |
42751447 |
attgaaggatttgggacaagt |
42751467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 504 - 599
Target Start/End: Complemental strand, 42736678 - 42736583
Alignment:
| Q |
504 |
agtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttgaaatctttcaaattgaaggattttggacaagt |
599 |
Q |
| |
|
||||||||||||||| | ||| ||||| | ||||||||| |||||||||| |||||||| ||||||||| | | |||||| |||||||||||||| |
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| T |
42736678 |
agtacgagtaacattcaaagagtgtccaattttaaagtcaggaattgtgatggctggataattgaaatctattatattgaaagattttggacaagt |
42736583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 473 - 520
Target Start/End: Original strand, 42767739 - 42767786
Alignment:
| Q |
473 |
tatatgtgcttggagaccccacgttggtaagagtacgagtaacattta |
520 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
42767739 |
tatatgtgcttggagacccaacgttggtgagagtacgagtaacattta |
42767786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 599
Target Start/End: Original strand, 42760809 - 42760929
Alignment:
| Q |
479 |
tgcttggagaccccacgttggtaagagtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttgaaatctttcaa |
578 |
Q |
| |
|
||||||||||||| || ||||| | ||| |||||||| || | || ||||| | ||||| ||| ||| |||||| |||||||| |||||||| | || |
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|
| T |
42760809 |
tgcttggagacccgacattggttacagtgcgagtaacgttcaaaggctgtccaattttaatgtcaggaactgtgatggctggataattgaaatcaattaa |
42760908 |
T |
|
| Q |
579 |
attgaaggattttggacaagt |
599 |
Q |
| |
|
|||||||||||| |||||||| |
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|
| T |
42760909 |
attgaaggatttgggacaagt |
42760929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 599
Target Start/End: Complemental strand, 23042511 - 23042391
Alignment:
| Q |
479 |
tgcttggagaccccacgttggtaagagtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttgaaatctttcaa |
578 |
Q |
| |
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||||||||||||| || ||||| | |||||||||||| || | || ||||| | |||||||| | ||| | |||| |||||||| |||||||| | || |
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| T |
23042511 |
tgcttggagacccgacattggttacagtacgagtaacgttcaaaggctgtccaattttaaagttcggaactatgatggctggataattgaaatcaattaa |
23042412 |
T |
|
| Q |
579 |
attgaaggattttggacaagt |
599 |
Q |
| |
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|||||||||||| |||||||| |
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|
| T |
23042411 |
attgaaggatttgggacaagt |
23042391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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