View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6623_high_12 (Length: 417)
Name: NF6623_high_12
Description: NF6623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6623_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Original strand, 24793286 - 24793679
Alignment:
| Q |
17 |
cattcaataaacaatattgaattctaagctctctcaactccttcaactttccaatcccatcaggaacaccaccatgaaaatttgttgaaccaagattaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24793286 |
cattcaataaacaatattgaattctaagctctctcaactccttcaactttccaatcccatcaggaacaccaccatgaaaatttgttgaaccaagattaag |
24793385 |
T |
|
| Q |
117 |
atattgcaaactagtactcaaatttccaatatcattaggaataataccatcaaaattgttcatagaaagatctaagtaaacaagctttgaacaattatag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24793386 |
atattgcaaactagtactcaaatttccaatatcattaggaataataccatcaaaattgttcatagaaagatctaagtaaacaagctttgaacaattatag |
24793485 |
T |
|
| Q |
217 |
aatagtgttggaaaatcaccagggatgaagttggaactgaagtcaacatgtgtaaggcttttgagttcatcacaaataaaaggtggtattgtttgtgaga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
24793486 |
aatagtgttggaaaatcaccagggatgaagttggaactgaagtcaacatgtgtaaggcttttgagttcatcacaaataaagggtggtattgtttgtgtga |
24793585 |
T |
|
| Q |
317 |
tattcatctgtgaaagtgttattccagtgacagaaacagaatcatttgtgcaagtgatttctttccaagaacaatgattggaatttgatgatgt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24793586 |
tattcatctgtgaaagtgttattccagtgacagaaacagaatcatttgtgcaagtgattcctttccaagaacaatgattggaatttgatgatgt |
24793679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 31118506 - 31118448
Alignment:
| Q |
18 |
attcaataaacaatattgaattctaagctctctcaactccttcaactttccaatcccat |
76 |
Q |
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| T |
31118506 |
attcaataaacaatattgaattataagttctcttaattcctttaactttccaattccat |
31118448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 55 - 178
Target Start/End: Original strand, 7361721 - 7361847
Alignment:
| Q |
55 |
tccttcaactttccaatcccatcaggaacaccaccatgaaaatttgttgaaccaagattaaga---tattgcaaactagtactcaaatttccaatatcat |
151 |
Q |
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|||||||||||||||| | || ||||||||||||| |||||||||| |||||| ||||||| ||||| ||| ||||| ||||||||| ||||||| |
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| T |
7361721 |
tccttcaactttccaaatctatgaggaacaccaccagtaaaatttgttaaaccaaaattaagaaaatattgaaaattagtattcaaatttcatatatcat |
7361820 |
T |
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| Q |
152 |
taggaataataccatcaaaattgttca |
178 |
Q |
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| T |
7361821 |
taggaataataccatcaaaattgttca |
7361847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 7361841 - 7361885
Alignment:
| Q |
362 |
ttgtgcaagtgatttctttccaagaacaatgattggaatttgatg |
406 |
Q |
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|||| ||| ||||||||||||||||||| |||||||||||||||| |
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| T |
7361841 |
ttgttcaaatgatttctttccaagaacagtgattggaatttgatg |
7361885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 42662156 - 42662215
Alignment:
| Q |
18 |
attcaataaacaatattgaattctaagctctctcaactccttcaactttccaatcccatc |
77 |
Q |
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|||||||||||||||||||||| |||| ||||| || ||||| ||||||||||| ||||| |
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| T |
42662156 |
attcaataaacaatattgaattataagttctcttaattcctttaactttccaattccatc |
42662215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 42660269 - 42660210
Alignment:
| Q |
18 |
attcaataaacaatattgaattctaagctctctcaactccttcaactttccaatcccatc |
77 |
Q |
| |
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|||||||||||||||||||||| |||| |||| || ||||| ||||||||||| ||||| |
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| T |
42660269 |
attcaataaacaatattgaattataagttctcctaattcctttaactttccaattccatc |
42660210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 50053643 - 50053702
Alignment:
| Q |
18 |
attcaataaacaatattgaattctaagctctctcaactccttcaactttccaatcccatc |
77 |
Q |
| |
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|||||||||||||||||||||| |||| ||||| || ||||| || |||||||| ||||| |
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| T |
50053643 |
attcaataaacaatattgaattataagttctcttaattcctttaattttccaattccatc |
50053702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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