View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6623_high_14 (Length: 375)
Name: NF6623_high_14
Description: NF6623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6623_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 53251419 - 53251149
Alignment:
| Q |
16 |
atggctctgtcaaggttaatggaagcagtaattctctagcaggctaaattgagaagaaggagaaaccttggactaaagaagagatcgagctattgagaaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53251419 |
atggctctgtcaaggttaatggaagcagtaattctctagcaagctacgttgagaagaaggagaaaccttggactaaagaagagatcgagctattgagaaa |
53251320 |
T |
|
| Q |
116 |
aggaatacgaaagtttcccaaaggaacttcaagcagatgggaggttgtttcagaatacattggcactggaagatctgttgaagaaataatgaaagcaact |
215 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53251319 |
aggaatacgaaagtttcccaaaggaacttcaaggagatgggaggttgtttcagaatacattggcactggaagatctgttgaagaaataatgaaagcaact |
53251220 |
T |
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| Q |
216 |
aaaactgtcctcctccagaagcccgatacagccaaagcttttgatacatttcttgagaagaggaaaccagc |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53251219 |
aaaactgtcctcctccagaagcccgatacagccaaagcttttgatacatttcttgagaagaggaaaccagc |
53251149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 53237001 - 53236731
Alignment:
| Q |
16 |
atggctctgtcaaggttaatggaagcagtaattctctagcaggctaaattgagaagaaggagaaaccttggactaaagaagagatcgagctattgagaaa |
115 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
53237001 |
atggctctgtcaaggctaatggaagcagtagttctctagcaggctacatagagaagaaggagaaaccttggactaaagaagagattgagctattgagaaa |
53236902 |
T |
|
| Q |
116 |
aggaatacgaaagtttcccaaaggaacttcaagcagatgggaggttgtttcagaatacattggcactggaagatctgttgaagaaataatgaaagcaact |
215 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53236901 |
aggaatacaaaagtttcccaaaggaacttcaaggagatgggaggttgtttcagaatacattggcactggaagatctgttgaagaaataatgaaagcaact |
53236802 |
T |
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| Q |
216 |
aaaactgtcctcctccagaagcccgatacagccaaagcttttgatacatttcttgagaagaggaaaccagc |
286 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
53236801 |
aaaactgttctcctccagaagcccgatacagccaaagcttttgatacatttcttgagaaaaggaaaccagc |
53236731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 286 - 358
Target Start/End: Complemental strand, 53251077 - 53251005
Alignment:
| Q |
286 |
caacaactgaaaatggtgctgccaaaacaacaacagtaccaactccgacgacaacaacaccgacaccgataac |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53251077 |
caacaactgaaaatggtgctgccaaaacaacaacagtaccaactccgacgacaacaacactgacaccgataac |
53251005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 44741085 - 44740818
Alignment:
| Q |
16 |
atggctctgtcaaggttaatggaagcagtaattctctagcaggctaaattgagaagaaggagaaaccttggactaaagaagagatcgagctattgagaaa |
115 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44741085 |
atggctctgtcaaggttaatggaagcagtagttctctagcaggctacgtagagaagaaggagaaaccttggactaaagaagagatcgagctattgagaaa |
44740986 |
T |
|
| Q |
116 |
aggaatacgaaagtttcccaaaggaacttcaagcagatgggaggttgtttcagaatacattggcactggaagatctgttgaagaaataatgaaagcaact |
215 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44740985 |
aggaatacaaaagtttcccaaaggaacttcaaggagatgggaggttgtttcagaatacattggcactggaagatctgttgaagaaataatgaaagcaact |
44740886 |
T |
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| Q |
216 |
aaaactgtcctcctccagaagcccgatacagccaaagcttttgatacatttcttgagaagaggaaacc |
283 |
Q |
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||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44740885 |
aaaaccgttcttctccagaagcccgatacagccaaagcttttgatacatttcttgagaagaggaaacc |
44740818 |
T |
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