View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6623_high_15 (Length: 371)

Name: NF6623_high_15
Description: NF6623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6623_high_15
NF6623_high_15
[»] chr1 (1 HSPs)
chr1 (62-357)||(40311392-40311686)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 62 - 357
Target Start/End: Complemental strand, 40311686 - 40311392
Alignment:
Q  62 tttcagcccccatttttctcttttgggttcttccaaccctaccggccccaaaaccttgcatccccaacacaacaatctctcagcctcaatttcacgttca 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40311686 tttcagcccccatttttctcttttgggttcttccaaccctaccggccccaaaaccttgcatccccaacacaacaatctctcagcctcaatttcacgttca 40311587  T
Q  162 ccttcactttatggacacacagacaggtaatttaatttttctaattactcccttttattttaggtttcacaccattcctcctttgttcttcataagttgt 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40311586 ccttcactttatggacacacagacaggtaatttaatttttctaattactcccttttattttaggtttcacatcattcctcctttgttcttcataagttgt 40311487  T
Q  262 tcataattttattttattgcacccttgtttcttcacaatttaattttnnnnnnnntaatagagaaagaaataggttctgcatttatctcaatttat 357  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  40311486 tcatagttttattttattgcacccttgcttcttcacaatttaatttt-aaaaaaataatagagaaagaaataggttctgcatttatctcaatttat 40311392  T

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