View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6623_high_18 (Length: 275)

Name: NF6623_high_18
Description: NF6623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6623_high_18
NF6623_high_18
[»] chr1 (1 HSPs)
chr1 (16-275)||(26496345-26496605)
[»] chr4 (2 HSPs)
chr4 (18-214)||(47521690-47521886)
chr4 (160-209)||(47521639-47521687)
[»] chr5 (2 HSPs)
chr5 (16-214)||(37718773-37718970)
chr5 (230-267)||(37719006-37719044)
[»] chr6 (2 HSPs)
chr6 (16-214)||(4436190-4436387)
chr6 (53-212)||(4092423-4092582)
[»] chr3 (2 HSPs)
chr3 (16-214)||(46594451-46594648)
chr3 (39-129)||(25490131-25490221)
[»] chr8 (1 HSPs)
chr8 (20-76)||(38016302-38016358)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 26496605 - 26496345
Alignment:
Q  16 ataaaaaataagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26496605 ataaaaaataagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcata 26496506  T
Q  116 gttgatactaaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactactactt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  26496505 gttgatactaaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaacccattcaatggctgattccagtacaggtttgactactactt 26496406  T
Q  216 catacacctcgtccaaatttgta-acggtcactctatcagacacaaatcaaattggaatac 275  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  26496405 catacatctcgtccaaatttgtatacggtcactctatcagacacaaatcaaatcggaatac 26496345  T

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Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 47521886 - 47521690
Alignment:
Q  18 aaaaaataagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagt 117  Q
    |||||| ||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47521886 aaaaaaaaagaatgaggcttgcctcaagtaagttcttgtgatttttttatcgaacaattagaatgcaaagtagatttcatcaaactgaatgactcatagt 47521787  T
Q  118 tgatactaaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactactact 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47521786 tgatactaaatttcaaacaactaaaaatatcacattcaatttctataattttgaaaccccttctatggttgattccagtacaggtttgactactact 47521690  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 47521687 - 47521639
Alignment:
Q  160 ctacaattttgaaaccccttctatggctgattccagtacaggtttgacta 209  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  47521687 ctacaattttgaaacccct-ctatggctgattccagtacaggtttaacta 47521639  T

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Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 37718773 - 37718970
Alignment:
Q  16 ataaaaaataagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcata 115  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  37718773 ataacaaataagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcata 37718872  T
Q  116 gttgatactaaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactactact 214  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||||||||||||    
T  37718873 gttgatactaaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattcc-gtacaggtttgactactact 37718970  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 37719006 - 37719044
Alignment:
Q  230 aaatttgtaa-cggtcactctatcagacacaaatcaaat 267  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  37719006 aaatttgtaaacggtcactctatcagacacaaatcaaat 37719044  T

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Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 4436387 - 4436190
Alignment:
Q  16 ataaaaaataagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcata 115  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  4436387 ataaaaaataagaatgaggattgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcata 4436288  T
Q  116 gttgatactaaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactactact 214  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||||||||||||    
T  4436287 gttgatactaaatttcaaacaactaataatatcaaattcaatttctataattttgaaacccattctatgactgattcc-gtacaggtttgactactact 4436190  T

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Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 53 - 212
Target Start/End: Complemental strand, 4092582 - 4092423
Alignment:
Q  53 ttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagttgatactaaatttcaaacaactaaaaatatcacat 152  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4092582 ttgtgatctttttatcgaacaattagaatgcaaagtagatttcatcaaactgaatgactcatggttgatactaaatttcaaacaactaaaaatatcacat 4092483  T
Q  153 tcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactacta 212  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4092482 tcaatttctataattttgaaaccccttctatggctgactccagtacaggtttgactacta 4092423  T

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Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 46594451 - 46594648
Alignment:
Q  16 ataaaaaataagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcata 115  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  46594451 ataaaaaataagaatgaggattgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcata 46594550  T
Q  116 gttgatactaaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactactact 214  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||||||||||||    
T  46594551 gttgatactaaatttcaaacaactaataatatcaaattcaatttctataattttgaaacccattctatgactgattcc-gtacaggtttgactactact 46594648  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 25490221 - 25490131
Alignment:
Q  39 cctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagttgatactaaatt 129  Q
    |||||| | |||||| |||||| ||||||  |||  ||| |||||||||||| |||||||||| |||||||||  || |||||||| ||||    
T  25490221 cctcaacttagttctagtgatccttttatcaaacggttataatgcaaagtagctttcatcaaagtgaatgacttgtaattgatactgaatt 25490131  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 38016302 - 38016358
Alignment:
Q  20 aaaataagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaatt 76  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||    
T  38016302 aaaataagaatgaaatttgcctcaagtaagttcttgtgatctttttattgaacaatt 38016358  T

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