View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6623_high_22 (Length: 251)

Name: NF6623_high_22
Description: NF6623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6623_high_22
NF6623_high_22
[»] chr1 (2 HSPs)
chr1 (24-158)||(26496208-26496342)
chr1 (186-236)||(26496130-26496180)
[»] chr4 (1 HSPs)
chr4 (1-158)||(47521417-47521583)
[»] chr5 (2 HSPs)
chr5 (1-158)||(37719059-37719225)
chr5 (1-79)||(30440477-30440555)
[»] chr3 (2 HSPs)
chr3 (1-158)||(46594739-46594905)
chr3 (96-134)||(32550224-32550262)
[»] chr6 (2 HSPs)
chr6 (1-158)||(4435933-4436099)
chr6 (5-158)||(4092155-4092317)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 26496342 - 26496208
Alignment:
Q  24 gaatcaagattatcaccaattttattgtgaaaacctagaataagaccaaatgtaatcctttcatcccctatcagctttgaataaattgcttcctgattca 123  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26496342 gaatcaagattatccccaattttatagtgaaaacctagaataagaccaaatgtaatcctttcatcccctatcagctttgaataaattgcttcctgattca 26496243  T
Q  124 gacagctcctgcaaacatcctttaattttactatc 158  Q
    |||||||||||||||||||||||||||||||||||    
T  26496242 gacagctcctgcaaacatcctttaattttactatc 26496208  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 26496180 - 26496130
Alignment:
Q  186 gagtcacattggtaggtttcaactaaagaaattctaaaaacagtgatatac 236  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26496180 gagtcacattggtaggtttcaactaaacaaattctaaaaacagtgatatac 26496130  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 47521583 - 47521417
Alignment:
Q  1 caacattaacaaaaactacacctgaatcaagattatcaccaattttattgtgaaaacctagaataagaccaaatgtaatcc-tttcatc--------ccc 91  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||  ||||||||||||||||||||| |||||||   ||| ||         |      
T  47521583 caacattaacaaaatctacaccagaatcaagattatcaccaattttataatgaaaacctagaataagaccatatgtaataaattttatagtgaaaatcta 47521484  T
Q  92 tatcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc 158  Q
     |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47521483 catcaactttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc 47521417  T

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Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 37719059 - 37719225
Alignment:
Q  1 caacattaacaaaaactacacctgaatcaagattatcaccaattttattgtgaaaacctagaataagaccaaatgtaatcctttc-------atccccta 93  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||  ||||||||||||||||||||  | |||||   ||        ||   |||    
T  37719059 caacattaacaaaatctacaccagaatcaagattatcaccaattttataatgaaaacctagaataagaccggaagtaataaattttatagtgataatcta 37719158  T
Q  94 --tcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc 158  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37719159 catcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc 37719225  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 30440477 - 30440555
Alignment:
Q  1 caacattaacaaaaactacacctgaatcaagattatcaccaattttattgtgaaaacctagaataagaccaaatgtaat 79  Q
    |||||| ||||||| ||||||| |||||||||||||||||||| |||| |||||||||||||| ||||||| |||||||    
T  30440477 caacatcaacaaaatctacaccagaatcaagattatcaccaatgttatagtgaaaacctagaaaaagaccagatgtaat 30440555  T

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Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 46594739 - 46594905
Alignment:
Q  1 caacattaacaaaaactacacctgaatcaagattatcaccaattttattgtgaaaacctagaataagaccaaatgtaatcctttc-------atccccta 93  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||  ||||||||||||||||||||  | |||||   ||        ||   |||    
T  46594739 caacattaacaaaatctacaccagaatcaagattatcaccaattttataatgaaaacctagaataagaccggaagtaatagattttatagtgataatcta 46594838  T
Q  94 --tcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc 158  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46594839 catcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc 46594905  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 32550224 - 32550262
Alignment:
Q  96 agctttgaataaattgcttcctgattcagacagctcctg 134  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  32550224 agctttgaataaattacgtcctgattcagacagctcctg 32550262  T

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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 4436099 - 4435933
Alignment:
Q  1 caacattaacaaaaactacacctgaatcaagattatcaccaattttattgtgaaaacctagaataagaccaaatgtaatcctttc-------atccccta 93  Q
    |||||||||||||| ||||| | |||||||||||||||||||||||||  ||||||||||||||||||||  | |||||   ||        ||   |||    
T  4436099 caacattaacaaaatctacatcagaatcaagattatcaccaattttataatgaaaacctagaataagaccggaagtaataaattttatagtgataatcta 4436000  T
Q  94 --tcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc 158  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4435999 catcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc 4435933  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 4092317 - 4092155
Alignment:
Q  5 attaacaaaaactacacctgaatcaagattatcaccaattttattgtgaaaacctagaataagaccaaatgtaatcc-tttcatc--------ccctatc 95  Q
    |||||||||| ||||||| |||||||||||||||||||||| ||  ||||||||||||||||||||| |||||||   ||| ||         |   |||    
T  4092317 attaacaaaatctacaccagaatcaagattatcaccaatttcataatgaaaacctagaataagaccagatgtaataaattttatagtgaaaatctacatc 4092218  T
Q  96 agctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc 158  Q
    ||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  4092217 agccttgaataaattgcttcctgatttagacagctactgcaaacatcctttaattttactatc 4092155  T

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