View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6623_high_6 (Length: 523)
Name: NF6623_high_6
Description: NF6623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6623_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 8 - 402
Target Start/End: Complemental strand, 13340995 - 13340601
Alignment:
| Q |
8 |
agattattctgtccaattctgttcggttttggaagggttgggggctgtttagttcggcattatatctgagattggggatatctgttgttggcagccgtgc |
107 |
Q |
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| T |
13340995 |
agatttttctgtccaattctgttcggttttggaagggttgggggctgtttaattcggcattatatctgagattggggatatctgttgttggcagccgtgc |
13340896 |
T |
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| Q |
108 |
acataacaagataccttgattcttattgttagttcaatgtgatctttgaatataatagttacatcaatgtgactattgtaacttcgaccaacacataata |
207 |
Q |
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| T |
13340895 |
acataacaagataacttgattcttattgttagttcaatgtgatctttgaatataatagttacatcaatgtgactattgtaacttcgaccaacacataata |
13340796 |
T |
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| Q |
208 |
agagactttaccaccgtggaccggtttttaacaattttatgaagtttttcctttactaatgtactcaatataaatcaaagattgacgtgataaaacatta |
307 |
Q |
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| T |
13340795 |
agagactttaccaccgtggatcggtttttaacaattttatgaagtttttcctttactaatgtactcaatataaatcaaagattgacgtgataaaacatta |
13340696 |
T |
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| Q |
308 |
gaagtaattatttatatcgctttttgtgtcacactctttttaagtcaaacattatgatatgtttagcttagaaaataagaagataagaacgagat |
402 |
Q |
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| T |
13340695 |
gaagtaattatttatatcgctttttgtgtcacactctttttaagtcaaacattatgatatgtttagcttagaaaataagaagataagaacgagat |
13340601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 6355044 - 6354956
Alignment:
| Q |
19 |
tccaattctgttcggttttggaagggttgggggctgtttagttcggcattatatctgagattggggatatctgttgttggcagccgtgc |
107 |
Q |
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| T |
6355044 |
tccaattatgtttggttttggaagggttgggggctgtttatttcggcattctatctaagtttggggaaatctgctgttggcagcagtgc |
6354956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 41219150 - 41219100
Alignment:
| Q |
171 |
tcaatgtgactattgtaacttcgaccaacacataataagagactttaccac |
221 |
Q |
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| T |
41219150 |
tcaatgtgactattgtaacttcggccaacacacaatatgagactttaccac |
41219100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 1874614 - 1874702
Alignment:
| Q |
19 |
tccaattctgttcggttttggaagggttgggggctgtttagttcggcattatatctgagattggggatatctgttgttggcagccgtgc |
107 |
Q |
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| T |
1874614 |
tccaattctgttcggttttggaagggttgggggctgtttagttcgtcattctatctaagtttgggaaaatttgttgttggcagcagtgc |
1874702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 14244494 - 14244406
Alignment:
| Q |
19 |
tccaattctgttcggttttggaagggttgggggctgtttagttcggcattatatctgagattggggatatctgttgttggcagccgtgc |
107 |
Q |
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| T |
14244494 |
tccaattatgtttggttttggaagggttgggggctgtttagttcggcattctatctaagtttggggaaatctgctgttggcagcagtgc |
14244406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 24499383 - 24499318
Alignment:
| Q |
171 |
tcaatgtgactattgtaacttcgaccaacacataataagagactttaccaccgtggaccggttttt |
236 |
Q |
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| T |
24499383 |
tcaatgtgattattgtaacttcgaccaacacacaatatgagactttactaccgtggagcggctttt |
24499318 |
T |
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