View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6623_low_11 (Length: 432)
Name: NF6623_low_11
Description: NF6623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6623_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 145 - 417
Target Start/End: Complemental strand, 25617551 - 25617279
Alignment:
| Q |
145 |
aactacgtattaccattnnnnnnnccagtttaaaaagtaatatgaaaatcaagaacagctaaactcggataaaaaacaagaacagcggcgacgaactccg |
244 |
Q |
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| T |
25617551 |
aactacgtattaccattaaaaaaaccagtttaaaaagtaatatgaaaatcaagaacagctaaactcggataaaaaagaagaacagtggcgacgaactttg |
25617452 |
T |
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| Q |
245 |
gtgaacagcaacgtcgccgataaataggaacaacaacgacgaacactcgtcagatctgcgctagcacatgtctagtgcctcttcatctctttcctccttg |
344 |
Q |
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| T |
25617451 |
gtgaacaggaacgtcgccgataaataggaacaacaacgacgaacactcgtcagatctgcgctagcacatatctagtgcctcttcatctctttcctccttg |
25617352 |
T |
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| Q |
345 |
caacctttgactcatattttaatttttctgtgaatcagccaagagaactttgtcaaataaacccttggattat |
417 |
Q |
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| T |
25617351 |
caacctttgactcatattttaatttttctgtgaatcagccaagagaactttgtcaaataaacccttggattat |
25617279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 25617718 - 25617594
Alignment:
| Q |
18 |
gtgcttcttctccagccgtttcgtctccctgttgcttcttctcccttttttcattccccttttgtgtgcatcatatgaatccagacttctaatctttaat |
117 |
Q |
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| T |
25617718 |
gtgcttcttctccagccgtttcatctccctgttgcttcttctcccttttttcattccccttttgtgtgcatcatatgaatccagacttctaatctttaat |
25617619 |
T |
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| Q |
118 |
ctaatttcattatctctttcattat |
142 |
Q |
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| T |
25617618 |
ctaatttcattatctctttcattat |
25617594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 29647344 - 29647294
Alignment:
| Q |
18 |
gtgcttcttctccagccgtttcgtctccctgttgcttcttctccctttttt |
68 |
Q |
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| T |
29647344 |
gtgcttattctccaaccgtttcatctccctgttgcttcttctccctttttt |
29647294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 17873186 - 17873125
Alignment:
| Q |
235 |
acgaactccggtgaacagcaacgtcgccgataaataggaacaacaacgacgaacactcgtca |
296 |
Q |
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| T |
17873186 |
acgaactccgatgaacaggaacgttgccgacgaataggaacaacgacgacgaacactcgtca |
17873125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 44474322 - 44474362
Alignment:
| Q |
235 |
acgaactccggtgaacagcaacgtcgccgataaataggaac |
275 |
Q |
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| T |
44474322 |
acgaactccggtgaacaggaacgttgccgacaaataggaac |
44474362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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