View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6623_low_16 (Length: 366)
Name: NF6623_low_16
Description: NF6623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6623_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 15176991 - 15176623
Alignment:
| Q |
1 |
tccttatataaacgctcgaaggaaaatcaaaga---gagattaaggattgatagagagaacaatgtcaatgaatcacatggtgagtttgttttgtcatat |
97 |
Q |
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| T |
15176991 |
tccttatataaacgctcgaaggaaaatcaaagaagagagattaaggactgatagagagaacaatctcaatgaatcacatggtgaatttgttttgtcatat |
15176892 |
T |
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| Q |
98 |
gtagatacattgttggatttggagttattggaagaagataataaaaggagccaacttgatgatggtaaaatttgtactttatgttccgagtttctgaatg |
197 |
Q |
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| T |
15176891 |
gtagatacattgttggatttggagttattggaagaagataataaaaggagccaacttgatgatggtaaaatttgtactttatgttccgagtttctaaatg |
15176792 |
T |
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| Q |
198 |
cgggaacagatacaacttcaactgcattggaatggatcatggcgaatttggtgaagtaccaagatatacaacaaaaacttgtacaagagattaaaggggt |
297 |
Q |
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| T |
15176791 |
cgggaacagatacaacttcaactgcattggaatggatcatggcgaatttggtgaagtaccaagatatacaagaaaaacttgtacaagagattaaaggggt |
15176692 |
T |
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| Q |
298 |
gattggagatgataaaaaggagaaagaaattagagaagaagatttgnnnnnnntgccatatcttaaagc |
366 |
Q |
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| T |
15176691 |
gattggagatgataaaaaggagaaagaaattagagaagaagatttgaaaaaaatgccatatcttaaagc |
15176623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 26506512 - 26506582
Alignment:
| Q |
179 |
tgttccgagtttctgaatgcgggaacagatacaacttcaactgcattggaatggatcatggcgaatttggt |
249 |
Q |
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| T |
26506512 |
tgttcggagtttctcactgccggaacagatacaacttcaactgcattagagtgggttatggcgaatttggt |
26506582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 2326867 - 2326945
Alignment:
| Q |
179 |
tgttccgagtttctgaatgcgggaacagatacaacttcaactgcattggaatggatcatggcgaatttggtgaagtacc |
257 |
Q |
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| T |
2326867 |
tgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcgaatttggtgaagtacc |
2326945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 2303312 - 2303390
Alignment:
| Q |
179 |
tgttccgagtttctgaatgcgggaacagatacaacttcaactgcattggaatggatcatggcgaatttggtgaagtacc |
257 |
Q |
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| T |
2303312 |
tgttcagagtttctgaatggtgggacggatactacttccactactttgcaatggattatggcgaatttggttaagtacc |
2303390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 2350888 - 2350966
Alignment:
| Q |
179 |
tgttccgagtttctgaatgcgggaacagatacaacttcaactgcattggaatggatcatggcgaatttggtgaagtacc |
257 |
Q |
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||||| |||||| ||||||| || | |||||| ||||| || || ||| ||||||| ||||| |||||||||||||||| |
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| T |
2350888 |
tgttcagagtttttgaatgctgggatagatactacttccacggctttgcaatggattatggcaaatttggtgaagtacc |
2350966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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