View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6623_low_18 (Length: 275)
Name: NF6623_low_18
Description: NF6623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6623_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 26496605 - 26496345
Alignment:
| Q |
16 |
ataaaaaataagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26496605 |
ataaaaaataagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcata |
26496506 |
T |
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| Q |
116 |
gttgatactaaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactactactt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
26496505 |
gttgatactaaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaacccattcaatggctgattccagtacaggtttgactactactt |
26496406 |
T |
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| Q |
216 |
catacacctcgtccaaatttgta-acggtcactctatcagacacaaatcaaattggaatac |
275 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
26496405 |
catacatctcgtccaaatttgtatacggtcactctatcagacacaaatcaaatcggaatac |
26496345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 47521886 - 47521690
Alignment:
| Q |
18 |
aaaaaataagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagt |
117 |
Q |
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| T |
47521886 |
aaaaaaaaagaatgaggcttgcctcaagtaagttcttgtgatttttttatcgaacaattagaatgcaaagtagatttcatcaaactgaatgactcatagt |
47521787 |
T |
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| Q |
118 |
tgatactaaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactactact |
214 |
Q |
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| T |
47521786 |
tgatactaaatttcaaacaactaaaaatatcacattcaatttctataattttgaaaccccttctatggttgattccagtacaggtttgactactact |
47521690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 47521687 - 47521639
Alignment:
| Q |
160 |
ctacaattttgaaaccccttctatggctgattccagtacaggtttgacta |
209 |
Q |
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| T |
47521687 |
ctacaattttgaaacccct-ctatggctgattccagtacaggtttaacta |
47521639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 37718773 - 37718970
Alignment:
| Q |
16 |
ataaaaaataagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcata |
115 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37718773 |
ataacaaataagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcata |
37718872 |
T |
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| Q |
116 |
gttgatactaaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactactact |
214 |
Q |
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| T |
37718873 |
gttgatactaaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattcc-gtacaggtttgactactact |
37718970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 37719006 - 37719044
Alignment:
| Q |
230 |
aaatttgtaa-cggtcactctatcagacacaaatcaaat |
267 |
Q |
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| T |
37719006 |
aaatttgtaaacggtcactctatcagacacaaatcaaat |
37719044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 4436387 - 4436190
Alignment:
| Q |
16 |
ataaaaaataagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcata |
115 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4436387 |
ataaaaaataagaatgaggattgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcata |
4436288 |
T |
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| Q |
116 |
gttgatactaaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactactact |
214 |
Q |
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| T |
4436287 |
gttgatactaaatttcaaacaactaataatatcaaattcaatttctataattttgaaacccattctatgactgattcc-gtacaggtttgactactact |
4436190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 53 - 212
Target Start/End: Complemental strand, 4092582 - 4092423
Alignment:
| Q |
53 |
ttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagttgatactaaatttcaaacaactaaaaatatcacat |
152 |
Q |
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| T |
4092582 |
ttgtgatctttttatcgaacaattagaatgcaaagtagatttcatcaaactgaatgactcatggttgatactaaatttcaaacaactaaaaatatcacat |
4092483 |
T |
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| Q |
153 |
tcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactacta |
212 |
Q |
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| T |
4092482 |
tcaatttctataattttgaaaccccttctatggctgactccagtacaggtttgactacta |
4092423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 46594451 - 46594648
Alignment:
| Q |
16 |
ataaaaaataagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcata |
115 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46594451 |
ataaaaaataagaatgaggattgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcata |
46594550 |
T |
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| Q |
116 |
gttgatactaaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaaccccttctatggctgattccagtacaggtttgactactact |
214 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||| |||||||| |||||||||||||||||||| |
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| T |
46594551 |
gttgatactaaatttcaaacaactaataatatcaaattcaatttctataattttgaaacccattctatgactgattcc-gtacaggtttgactactact |
46594648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 25490221 - 25490131
Alignment:
| Q |
39 |
cctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagttgatactaaatt |
129 |
Q |
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| T |
25490221 |
cctcaacttagttctagtgatccttttatcaaacggttataatgcaaagtagctttcatcaaagtgaatgacttgtaattgatactgaatt |
25490131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 38016302 - 38016358
Alignment:
| Q |
20 |
aaaataagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaatt |
76 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||| |||||||| |
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| T |
38016302 |
aaaataagaatgaaatttgcctcaagtaagttcttgtgatctttttattgaacaatt |
38016358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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