View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6623_low_2 (Length: 625)

Name: NF6623_low_2
Description: NF6623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6623_low_2
NF6623_low_2
[»] chr5 (10 HSPs)
chr5 (492-607)||(6318692-6318807)
chr5 (13-111)||(6327531-6327630)
chr5 (13-54)||(6318237-6318278)
chr5 (492-601)||(6327798-6327905)
chr5 (324-401)||(28782665-28782742)
chr5 (321-403)||(10317200-10317282)
chr5 (205-267)||(26913099-26913161)
chr5 (323-393)||(32522758-32522828)
chr5 (322-355)||(5958240-5958273)
chr5 (143-184)||(11487740-11487781)
[»] chr4 (9 HSPs)
chr4 (321-430)||(35911142-35911251)
chr4 (321-430)||(4867781-4867900)
chr4 (292-403)||(45683916-45684027)
chr4 (323-403)||(45674210-45674290)
chr4 (205-262)||(43034333-43034390)
chr4 (205-262)||(9783912-9783969)
chr4 (129-178)||(14031060-14031109)
chr4 (205-262)||(22164260-22164317)
chr4 (205-262)||(22474657-22474714)
[»] chr8 (16 HSPs)
chr8 (324-403)||(7207188-7207267)
chr8 (323-403)||(43819518-43819598)
chr8 (323-403)||(24066931-24067011)
chr8 (336-403)||(42542965-42543032)
chr8 (205-267)||(9192213-9192275)
chr8 (335-430)||(617487-617591)
chr8 (335-430)||(623880-623984)
chr8 (215-267)||(28436533-28436585)
chr8 (205-267)||(6038261-6038323)
chr8 (205-267)||(7553692-7553754)
chr8 (343-401)||(27737769-27737826)
chr8 (155-184)||(31699238-31699267)
chr8 (398-430)||(589939-589971)
chr8 (398-430)||(7207272-7207304)
chr8 (358-414)||(12221023-12221079)
chr8 (207-251)||(41603076-41603120)
[»] chr1 (18 HSPs)
chr1 (323-426)||(12173150-12173253)
chr1 (323-427)||(46289608-46289712)
chr1 (323-403)||(32267989-32268069)
chr1 (324-403)||(51046690-51046769)
chr1 (346-430)||(1107395-1107489)
chr1 (329-403)||(13925075-13925148)
chr1 (144-181)||(31224343-31224380)
chr1 (364-403)||(39421017-39421056)
chr1 (321-430)||(4886152-4886261)
chr1 (205-250)||(28832174-28832219)
chr1 (398-427)||(32268074-32268103)
chr1 (123-184)||(51998150-51998211)
chr1 (123-180)||(51998321-51998378)
chr1 (207-267)||(12522105-12522165)
chr1 (398-430)||(13925153-13925185)
chr1 (127-175)||(31224380-31224428)
chr1 (323-355)||(39420959-39420991)
chr1 (398-430)||(39421068-39421100)
[»] chr7 (9 HSPs)
chr7 (323-403)||(33474319-33474399)
chr7 (323-401)||(5082474-5082552)
chr7 (323-403)||(48705611-48705691)
chr7 (211-267)||(35751357-35751413)
chr7 (205-267)||(31292755-31292817)
chr7 (335-400)||(40982082-40982147)
chr7 (143-184)||(48294402-48294443)
chr7 (398-435)||(48705696-48705733)
chr7 (330-370)||(35822070-35822110)
[»] chr6 (9 HSPs)
chr6 (324-403)||(16441838-16441917)
chr6 (323-401)||(1947385-1947463)
chr6 (323-403)||(19645977-19646057)
chr6 (205-267)||(34701160-34701222)
chr6 (364-403)||(5138494-5138533)
chr6 (205-267)||(34828319-34828382)
chr6 (205-262)||(12700412-12700469)
chr6 (205-250)||(16890451-16890496)
chr6 (207-267)||(29740497-29740557)
[»] chr2 (11 HSPs)
chr2 (321-430)||(803915-804028)
chr2 (324-430)||(445560-445668)
chr2 (324-403)||(7888605-7888684)
chr2 (207-267)||(3617107-3617167)
chr2 (390-430)||(10824286-10824326)
chr2 (205-267)||(11175798-11175860)
chr2 (205-251)||(29872174-29872220)
chr2 (205-267)||(41859865-41859927)
chr2 (210-267)||(20200723-20200780)
chr2 (205-250)||(34191311-34191356)
chr2 (207-267)||(14735879-14735939)
[»] chr3 (16 HSPs)
chr3 (322-403)||(21814169-21814250)
chr3 (323-401)||(15005786-15005864)
chr3 (323-403)||(41998862-41998942)
chr3 (323-401)||(15502687-15502765)
chr3 (205-267)||(46903921-46903983)
chr3 (208-261)||(42074119-42074172)
chr3 (390-428)||(1165813-1165851)
chr3 (138-184)||(11616963-11617009)
chr3 (329-391)||(22455404-22455466)
chr3 (205-267)||(25441486-25441548)
chr3 (205-267)||(45885463-45885525)
chr3 (205-262)||(28430556-28430613)
chr3 (345-401)||(3084002-3084057)
chr3 (329-369)||(22478445-22478485)
chr3 (398-430)||(41998947-41998979)
chr3 (376-416)||(44121692-44121732)
[»] scaffold0045 (2 HSPs)
scaffold0045 (324-403)||(62627-62705)
scaffold0045 (324-403)||(69959-70037)
[»] scaffold0169 (1 HSPs)
scaffold0169 (332-403)||(9057-9128)
[»] scaffold0209 (1 HSPs)
scaffold0209 (335-430)||(29311-29415)
[»] scaffold0350 (1 HSPs)
scaffold0350 (205-267)||(1261-1323)


Alignment Details
Target: chr5 (Bit Score: 100; Significance: 4e-49; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 492 - 607
Target Start/End: Original strand, 6318692 - 6318807
Alignment:
Q  492 aactcattcaacaaatgattgttgttagatcactcatctgagtagcatgcgatttagataagtctgatatatcatatcacaaagctaagagacatggcct 591  Q
    ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6318692 aactcattcaacaaatggttgttgttagatcactcatttaagtagcatgcgatttagataagtctgatatatcatatcacaaagctaagagacatggtct 6318791  T
Q  592 tatcatgactcaagaa 607  Q
    ||||||||||||||||    
T  6318792 tatcatgactcaagaa 6318807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 6327531 - 6327630
Alignment:
Q  13 agaagaagaagagaat-gaggtttatttgttgctacgggatcctatttatacttgaaaataaattaaagatatggtcttaaaattattccaaaagatatt 111  Q
    |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| |  |||||||||||    
T  6327531 agaaaaagaagagaattgaggtttatttgttgctatgggatcctatttatacttgaaaataaattaaatatatgttcttaaaattgtgacaaaagatatt 6327630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 6318237 - 6318278
Alignment:
Q  13 agaagaagaagagaatgaggtttatttgttgctacgggatcc 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6318237 agaagaagaagagaatgaggtttatttgttgctacgggatcc 6318278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 492 - 601
Target Start/End: Original strand, 6327798 - 6327905
Alignment:
Q  492 aactcattcaacaaatgattgttgttagatcactcatctgagtagcatgcgatttagataagtctgatatatcatatcacaaagctaagagacatggcct 591  Q
    |||||||| |||||||| |||||||||||||||||||  |||||||||| | |  ||||||||||   || ||||||||||| || |||| ||||||  |    
T  6327798 aactcatttaacaaatggttgttgttagatcactcattcgagtagcatgtgttccagataagtct--catgtcatatcacaatgccaagaaacatggtat 6327895  T
Q  592 tatcatgact 601  Q
    ||||||||||    
T  6327896 tatcatgact 6327905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 324 - 401
Target Start/End: Original strand, 28782665 - 28782742
Alignment:
Q  324 ttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacactttt 401  Q
    |||| |||| ||||||||||| ||||| ||||  |||||||||||||| ||||||| ||  |||||||||||||||||    
T  28782665 ttaaggaaattaaaagtagtagttttgtattgaaaattacaacttttttacttttaaaatgttgaattcaacactttt 28782742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 10317200 - 10317282
Alignment:
Q  321 ttgttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    ||||||| |||||||||||| ||| ||||||||||  ||| ||||||||   |||| | |||| |||||||||||||||||||    
T  10317200 ttgttaaggaaactaaaagtggtagttttgcattgaaaatgacaactttcaaacttcttgaaagttgaattcaacacttttca 10317282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 26913161 - 26913099
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    |||||||||  ||||||||||||||| | |||||  |||||||||||||||||||||| ||||    
T  26913161 agttggtatagacaatgcataatatatgcaacgttcaaggttcaaactccggccaccacaaaa 26913099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 32522828 - 32522758
Alignment:
Q  323 gttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattca 393  Q
    |||||||||||||||| ||||| ||||||||||| ||| | || ||||| | ||||| ||| |||||||||    
T  32522828 gttaaagaaactaaaaatagtagttttgcattggaaataataattttttaaattttaaaaagttgaattca 32522758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 5958273 - 5958240
Alignment:
Q  322 tgttaaagaaactaaaagtagtaattttgcattg 355  Q
    |||||||||||||||||||||||||||| |||||    
T  5958273 tgttaaagaaactaaaagtagtaatttttcattg 5958240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 11487781 - 11487740
Alignment:
Q  143 tttaaataagatatatatcttttgaaacaatttcaaaaccat 184  Q
    ||||||||| | | ||||||||||||||||||||||||||||    
T  11487781 tttaaataaaacaaatatcttttgaaacaatttcaaaaccat 11487740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 321 - 430
Target Start/End: Original strand, 35911142 - 35911251
Alignment:
Q  321 ttgttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttcaacaaattatttttattt 420  Q
    ||||||| |||||||||||||||||||||||||||  ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  35911142 ttgttaaggaaactaaaagtagtaattttgcattgaaaattataactttttgacttttaaaaatttgaattcaacacttttcaacaaattatatttattt 35911241  T
Q  421 atgttctctt 430  Q
    ||||| ||||    
T  35911242 atgttttctt 35911251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 321 - 430
Target Start/End: Complemental strand, 4867900 - 4867781
Alignment:
Q  321 ttgttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacactt----------ttcaacaaatt 410  Q
    ||||||| |||| ||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||          |||||||||||    
T  4867900 ttgttaaggaaaataaaagtagtaattttgtattggaaattacaactttttgacttttaaaaatttgaattcaacacttttcaccacttttcaacaaatt 4867801  T
Q  411 atttttatttatgttctctt 430  Q
    ||||||||||||||||||||    
T  4867800 atttttatttatgttctctt 4867781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 292 - 403
Target Start/End: Original strand, 45683916 - 45684027
Alignment:
Q  292 tgtcttgttaaaaagtgtctttcgaaaaattgttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaatt 391  Q
    ||||||||||| ||||||| || |   | |||||||  ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||    
T  45683916 tgtcttgttaacaagtgtccttagggcacttgttaagaaaactaaaagtagtagttttgcattgggaattacaactttttaacttttataaatttgaatt 45684015  T
Q  392 caacacttttca 403  Q
    ||||||||||||    
T  45684016 caacacttttca 45684027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 323 - 403
Target Start/End: Complemental strand, 45674290 - 45674210
Alignment:
Q  323 gttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    ||||| ||||||||||||| || ||||  ||||  |||||||||||||| ||||| ||||| |||||||||||||||||||    
T  45674290 gttaaggaaactaaaagtaatacttttttattgaaaattacaactttttaactttaagaaagttgaattcaacacttttca 45674210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 43034390 - 43034333
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccacca 262  Q
    |||||||||| ||||||||||||||| | || |||| |||||||||| ||||||||||    
T  43034390 agttggtatggacaatgcataatatatgcaaggtctgaggttcaaaccccggccacca 43034333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 9783912 - 9783969
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccacca 262  Q
    ||||| |||| ||||||||||||||| |||| |||| ||||||||||  |||||||||    
T  9783912 agttgatatggacaatgcataatatatgtaaggtctgaggttcaaacctcggccacca 9783969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 14031109 - 14031060
Alignment:
Q  129 tatctttgattttatttaaataagatatatatcttttgaaacaatttcaa 178  Q
    ||||||||||||||||| |||   | ||||||||||||||||||||||||    
T  14031109 tatctttgattttatttgaatccaaaatatatcttttgaaacaatttcaa 14031060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 22164317 - 22164260
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccacca 262  Q
    |||||||| ||||||||||||||||| |||| ||||  ||||||||| ||| ||||||    
T  22164317 agttggtaggaacaatgcataatatatgtaaggtctggggttcaaaccccgaccacca 22164260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 22474714 - 22474657
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccacca 262  Q
    |||||||||||||||||||| |||||||||| || |  |||| ||| |||||||||||    
T  22474714 agttggtatgaacaatgcatcatatacgtaaagtttggggtttaaattccggccacca 22474657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 7207188 - 7207267
Alignment:
Q  324 ttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7207188 ttaaggaaactaaaagtagtaattttgcattgggaattacaactttttaacttttagaaatttgaattcaacacttttca 7207267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 43819518 - 43819598
Alignment:
Q  323 gttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    |||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||| ||||||    
T  43819518 gttaaagaaactaaaagtagtaattttgtattagaaattacaactttttgacttttagaaagttgaattcaacatttttca 43819598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 24066931 - 24067011
Alignment:
Q  323 gttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    ||||| |||||||||||||| | ||||||||||  |||||||||||||| ||||||||||  |||||||||||||||||||    
T  24066931 gttaaggaaactaaaagtagcagttttgcattgaaaattacaactttttaacttttagaaggttgaattcaacacttttca 24067011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 42542965 - 42543032
Alignment:
Q  336 aaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||| | |||||||||||||||||||    
T  42542965 aaagtagtaattttgcattgaaaattacaacttttttacttttagagagttgaattcaacacttttca 42543032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 9192275 - 9192213
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    |||||||||||||||||||||||||| |||| ||||  ||||||||| |||||||||| ||||    
T  9192275 agttggtatgaacaatgcataatatatgtaaagtctggggttcaaaccccggccaccacaaaa 9192213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 430
Target Start/End: Original strand, 617487 - 617591
Alignment:
Q  335 aaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaat---------tcaacacttttcaacaaattatttttatttatgtt 425  Q
    |||| ||||| ||||| |||||||| ||||||||| ||||||||||||| ||||||         ||| || |||| |||||||||||||||||||||||    
T  617487 aaaaatagtagttttgtattgggaactacaactttatgacttttagaaagttgaattaacatttctcaccattttttaacaaattatttttatttatgtt 617586  T
Q  426 ctctt 430  Q
    |||||    
T  617587 ctctt 617591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 430
Target Start/End: Original strand, 623880 - 623984
Alignment:
Q  335 aaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaat---------tcaacacttttcaacaaattatttttatttatgtt 425  Q
    |||| ||||| ||||| |||||||| ||||||||| ||||||||||||| ||||||         ||| || |||| |||||||||||||||||||||||    
T  623880 aaaaatagtagttttgtattgggaactacaactttatgacttttagaaagttgaattaacatttctcaccattttttaacaaattatttttatttatgtt 623979  T
Q  426 ctctt 430  Q
    |||||    
T  623980 ctctt 623984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 28436585 - 28436533
Alignment:
Q  215 aacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    |||||||||||||||| |||| ||| || |||||||||||| |||||||||||    
T  28436585 aacaatgcataatatatgtaaagtccaaagttcaaactccgaccaccataaaa 28436533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 6038323 - 6038261
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    ||||| |||| ||||||||||||||| |||| ||||   ||||||||||||||||||| ||||    
T  6038323 agttgatatggacaatgcataatatatgtaaggtctggagttcaaactccggccaccacaaaa 6038261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 7553692 - 7553754
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    |||||||| | ||||||||||||||| | || ||| |||||||||||||||| ||||| ||||    
T  7553692 agttggtagggacaatgcataatatatgcaaggtccaaggttcaaactccggacaccacaaaa 7553754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 401
Target Start/End: Complemental strand, 27737826 - 27737769
Alignment:
Q  343 taattttgcattgggaattacaactttttgacttttagaaatttgaattcaacactttt 401  Q
    |||||||| ||| | |||||||| ||||||||||||||||| || ||||||||||||||    
T  27737826 taattttgtattagaaattacaa-tttttgacttttagaaagttaaattcaacactttt 27737769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 184
Target Start/End: Complemental strand, 31699267 - 31699238
Alignment:
Q  155 atatatcttttgaaacaatttcaaaaccat 184  Q
    ||||||||||||||||||||||||||||||    
T  31699267 atatatcttttgaaacaatttcaaaaccat 31699238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 430
Target Start/End: Complemental strand, 589971 - 589939
Alignment:
Q  398 ttttcaacaaattatttttatttatgttctctt 430  Q
    |||| ||||||||||||||||||||||||||||    
T  589971 tttttaacaaattatttttatttatgttctctt 589939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 430
Target Start/End: Original strand, 7207272 - 7207304
Alignment:
Q  398 ttttcaacaaattatttttatttatgttctctt 430  Q
    ||||||||||||||||| |||||||||||||||    
T  7207272 ttttcaacaaattatttatatttatgttctctt 7207304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 358 - 414
Target Start/End: Original strand, 12221023 - 12221079
Alignment:
Q  358 aattacaactttttgacttttagaaatttgaattcaacacttttcaacaaattattt 414  Q
    ||||| |||||||  ||||||| ||| |||||||||||| ||||||||| |||||||    
T  12221023 aattataacttttaaacttttaaaaagttgaattcaacatttttcaacatattattt 12221079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 41603076 - 41603120
Alignment:
Q  207 ttggtatgaacaatgcataatatacgtaacgtctaaggttcaaac 251  Q
    |||||||||||||||||||||||| |||| ||||  |||||||||    
T  41603076 ttggtatgaacaatgcataatatatgtaaggtctggggttcaaac 41603120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 323 - 426
Target Start/End: Complemental strand, 12173253 - 12173150
Alignment:
Q  323 gttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttcaacaaattatttttatttat 422  Q
    ||||| |||||||||| ||||| ||||||||||| ||||| |||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||    
T  12173253 gttaaggaaactaaaaatagtagttttgcattggaaattataactttttgacttttacaaagttgaattcaacatttttcaacaaattatttctatttat 12173154  T
Q  423 gttc 426  Q
    ||||    
T  12173153 gttc 12173150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 323 - 427
Target Start/End: Complemental strand, 46289712 - 46289608
Alignment:
Q  323 gttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttcaacaaattatttttatttat 422  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||| | |||||||||| ||||||||||||||||| |||||||    
T  46289712 gttaaggaaactaaaagtagtagttttgcattggaaattacaactttttaacttttaaaaagtcgaattcaacatttttcaacaaattatttctatttat 46289613  T
Q  423 gttct 427  Q
     ||||    
T  46289612 attct 46289608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 32267989 - 32268069
Alignment:
Q  323 gttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    ||||| |||||||||||||||| |||| | |||| |||||||| ||||||||||||||||| |||||||||||||||||||    
T  32267989 gttaaggaaactaaaagtagtagttttacgttggaaattacaattttttgacttttagaaagttgaattcaacacttttca 32268069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 51046769 - 51046690
Alignment:
Q  324 ttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    |||| |||| ||||||||||| ||||||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||    
T  51046769 ttaaggaaattaaaagtagtagttttgcattggaaatgacaactttttgacttttaaaaagttgaattcaacacttttca 51046690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 346 - 430
Target Start/End: Complemental strand, 1107489 - 1107395
Alignment:
Q  346 ttttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttc----------aacaaattatttttatttatgttctctt 430  Q
    ||||||||||  ||||||||| || |||||||||| || ||||||||||||||||||          ||||||||||||||||||||||||||||    
T  1107489 ttttgcattgaaaattacaaccttatgacttttaggaagttgaattcaacacttttcaccgtttattaacaaattatttttatttatgttctctt 1107395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 403
Target Start/End: Original strand, 13925075 - 13925148
Alignment:
Q  329 gaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    ||||||||||  | || ||||| ||||| |||||||||||||||||||||||| | ||||||| |||||||||||    
T  13925075 gaaactaaaaacaatagttttgtattggaaattacaactttttgacttttagatagttgaatt-aacacttttca 13925148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 31224343 - 31224380
Alignment:
Q  144 ttaaataagatatatatcttttgaaacaatttcaaaac 181  Q
    |||||||| |||||||||||||||||||||||||||||    
T  31224343 ttaaataaaatatatatcttttgaaacaatttcaaaac 31224380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 403
Target Start/End: Original strand, 39421017 - 39421056
Alignment:
Q  364 aactttttgacttttagaaatttgaattcaacacttttca 403  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  39421017 aactttgtgacttttagaaagttgaattcaacacttttca 39421056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 430
Target Start/End: Original strand, 4886152 - 4886261
Alignment:
Q  321 ttgttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttcaacaaattatttttattt 420  Q
    |||||||  ||| ||||| || |||| ||||||| | ||||| |||||||  ||||||| ||  ||||||||||| ||||  |||| |||||||||||||    
T  4886152 ttgttaagaaaattaaaaataataatcttgcattagaaattataacttttaaacttttaaaaggttgaattcaacgctttctaacacattatttttattt 4886251  T
Q  421 atgttctctt 430  Q
      ||||||||    
T  4886252 tcgttctctt 4886261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 28832219 - 28832174
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaa 250  Q
    |||||||||||||||||||||||||| | || |||| |||||||||    
T  28832219 agttggtatgaacaatgcataatatatgcaaggtctgaggttcaaa 28832174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 32268074 - 32268103
Alignment:
Q  398 ttttcaacaaattatttttatttatgttct 427  Q
    ||||||||||||||||||||||||||||||    
T  32268074 ttttcaacaaattatttttatttatgttct 32268103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 51998211 - 51998150
Alignment:
Q  123 aaatcatatctttgattttatttaaataagatatatatcttttgaaacaatttcaaaaccat 184  Q
    |||||||||||||||| |||||| |||   | |||| |||||| ||||||||||||||||||    
T  51998211 aaatcatatctttgatattatttgaatctaaaatatgtcttttcaaacaatttcaaaaccat 51998150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 51998378 - 51998321
Alignment:
Q  123 aaatcatatctttgattttatttaaataagatatatatcttttgaaacaatttcaaaa 180  Q
    ||||||||| |||||||||||||||||   | |||||| |||| ||||||||||||||    
T  51998378 aaatcatatatttgattttatttaaatccaaaatatatattttaaaacaatttcaaaa 51998321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 12522165 - 12522105
Alignment:
Q  207 ttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    ||||||||||||| ||||||||||   || |||| |||||||||| ||| |||||||||||    
T  12522165 ttggtatgaacaacgcataatatatacaaggtctgaggttcaaaccccgaccaccataaaa 12522105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 430
Target Start/End: Original strand, 13925153 - 13925185
Alignment:
Q  398 ttttcaacaaattatttttatttatgttctctt 430  Q
    ||||||||||||||||| |||||||||||||||    
T  13925153 ttttcaacaaattatttctatttatgttctctt 13925185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 31224380 - 31224428
Alignment:
Q  127 catatctttgattttatttaaataagatatatatcttttgaaacaattt 175  Q
    |||||||||||||||||||||||   | |||||| ||||||||||||||    
T  31224380 catatctttgattttatttaaatccaaaatatattttttgaaacaattt 31224428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 355
Target Start/End: Original strand, 39420959 - 39420991
Alignment:
Q  323 gttaaagaaactaaaagtagtaattttgcattg 355  Q
    |||||||||||||||||||||| ||||||||||    
T  39420959 gttaaagaaactaaaagtagtagttttgcattg 39420991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 430
Target Start/End: Original strand, 39421068 - 39421100
Alignment:
Q  398 ttttcaacaaattatttttatttatgttctctt 430  Q
    ||||||||||||||||| |||||||||||||||    
T  39421068 ttttcaacaaattatttctatttatgttctctt 39421100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 33474319 - 33474399
Alignment:
Q  323 gttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    ||||| |||||||||| ||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||    
T  33474319 gttaaggaaactaaaaatagtaattttgcattgaaaattacaactttttgacttttagaaagttgaattcaacacttttca 33474399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 323 - 401
Target Start/End: Original strand, 5082474 - 5082552
Alignment:
Q  323 gttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacactttt 401  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  5082474 gttaaggaaactaaaagtagtagttttgcattggaaattacaactttttgacttttaaaaagttgaattcaacactttt 5082552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 48705611 - 48705691
Alignment:
Q  323 gttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    ||||| |||||||||||||||| ||||||||| | |||||||||||||| ||||||||||| |||||||||||||||||||    
T  48705611 gttaaggaaactaaaagtagtagttttgcattagaaattacaactttttaacttttagaaagttgaattcaacacttttca 48705691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 35751413 - 35751357
Alignment:
Q  211 tatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    |||||| ||||||||||||| |||| ||||| | |||||||||||||||||| ||||    
T  35751413 tatgaataatgcataatatatgtaaagtctaggattcaaactccggccaccacaaaa 35751357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 31292817 - 31292755
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    |||||||||||||||||||||||| | | || ||||  ||||| |||||||||||||| ||||    
T  31292817 agttggtatgaacaatgcataatacatgcaaggtctggggttcgaactccggccaccacaaaa 31292755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 400
Target Start/End: Complemental strand, 40982147 - 40982082
Alignment:
Q  335 aaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttt 400  Q
    ||||||||||||||||||||| |||  |||| ||||| |||| || ||| ||||||||| ||||||    
T  40982147 aaaagtagtaattttgcattgagaacaacaattttttaacttctaaaaaattgaattcaccacttt 40982082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 48294402 - 48294443
Alignment:
Q  143 tttaaataagatatatatcttttgaaacaatttcaaaaccat 184  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||    
T  48294402 tttaaataaaatatataccttttaaaacaatttcaaaaccat 48294443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Original strand, 48705696 - 48705733
Alignment:
Q  398 ttttcaacaaattatttttatttatgttctctttaaca 435  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  48705696 ttttcaacaaattatttctatttatgttctcttaaaca 48705733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 35822070 - 35822110
Alignment:
Q  330 aaactaaaagtagtaattttgcattgggaattacaactttt 370  Q
    ||||||||||||||| ||||||||||  |||||||||||||    
T  35822070 aaactaaaagtagtagttttgcattgaaaattacaactttt 35822110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 16441917 - 16441838
Alignment:
Q  324 ttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    |||| |||||||||| ||||||||||||||| | |||||||||||||| |||||||||||||||||||||||| ||||||    
T  16441917 ttaaggaaactaaaaatagtaattttgcattagaaattacaacttttttacttttagaaatttgaattcaacatttttca 16441838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 323 - 401
Target Start/End: Original strand, 1947385 - 1947463
Alignment:
Q  323 gttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacactttt 401  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||| |||||||||    
T  1947385 gttaaggaaactaaaagtagtagttttgtattggaaattacaactttttgacttttagaaagttgaatttaacactttt 1947463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 19645977 - 19646057
Alignment:
Q  323 gttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    ||||| |||||||||||||||| ||||||||||| |||  |||||| |||||||||| ||| |||||||||||||||||||    
T  19645977 gttaaggaaactaaaagtagtagttttgcattggaaatgccaacttattgacttttaaaaagttgaattcaacacttttca 19646057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 34701160 - 34701222
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    |||||||| ||||||||||||||||| | || |||| ||||||||||||||||||||| ||||    
T  34701160 agttggtaggaacaatgcataatatatgcaaggtctgaggttcaaactccggccaccacaaaa 34701222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 403
Target Start/End: Original strand, 5138494 - 5138533
Alignment:
Q  364 aactttttgacttttagaaatttgaattcaacacttttca 403  Q
    |||| |||||||||||||||||||||||||||| ||||||    
T  5138494 aactctttgacttttagaaatttgaattcaacatttttca 5138533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 34828319 - 34828382
Alignment:
Q  205 agttggtatgaacaatgcataat-atacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    |||||||||| |||||||||||| ||| |||| |||| |||||| ||| |||||||||||||||    
T  34828319 agttggtatggacaatgcataataatatgtaaggtctgaggttcgaaccccggccaccataaaa 34828382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 12700469 - 12700412
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccacca 262  Q
    |||||||||||||||||||||||||| | || ||||| ||||  ||| ||||||||||    
T  12700469 agttggtatgaacaatgcataatatatgcaaggtctagggtttgaaccccggccacca 12700412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 16890496 - 16890451
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaa 250  Q
    |||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  16890496 agttggtatggacaatgcataaaatatgtaaggtctaaggttcaaa 16890451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 29740497 - 29740557
Alignment:
Q  207 ttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    |||||||| ||||||||||||||||| || |||   ||||||||| |||||||||| ||||    
T  29740497 ttggtatggacaatgcataatatacgcaaggtccggggttcaaaccccggccaccacaaaa 29740557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 321 - 430
Target Start/End: Complemental strand, 804028 - 803915
Alignment:
Q  321 ttgttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaa----------cacttttcaacaaatt 410  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||      ||||||||||||||||||||          ||||||||||||||||    
T  804028 ttgttaaggaaactaaaagtagtaattttgcattggaaattacaactt------ttttagaaatttgaattcaatacttttcaccacttttcaacaaatt 803935  T
Q  411 atttttatttatgttctctt 430  Q
    ||||||||||||||||||||    
T  803934 atttttatttatgttctctt 803915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 430
Target Start/End: Original strand, 445560 - 445668
Alignment:
Q  324 ttaaagaaactaaaagtagtaattttgcattgggaa-ttacaactttttgacttttagaaatttgaattcaacacttttcaacaaattatttt-tattta 421  Q
    |||| |||||||||||||||| ||||||| ||  || || |||||||||||||||||| || ||||||||||||||||||| ||  || |||| ||||||    
T  445560 ttaaggaaactaaaagtagtagttttgcaatgaaaaattccaactttttgacttttaggaagttgaattcaacacttttcaccatttttttttctattta 445659  T
Q  422 tgttctctt 430  Q
    |||||||||    
T  445660 tgttctctt 445668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 7888684 - 7888605
Alignment:
Q  324 ttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    |||| |||| ||||||||||| ||||||||||  |||||||||||||| ||||||| ||| || ||||||||||||||||    
T  7888684 ttaaggaaattaaaagtagtagttttgcattgaaaattacaacttttttacttttataaaattaaattcaacacttttca 7888605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 3617107 - 3617167
Alignment:
Q  207 ttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    |||||| | ||||||||||||||||| || ||| | |||||||||||||||||||| ||||    
T  3617107 ttggtaaggacaatgcataatatacgcaaagtccagggttcaaactccggccaccaaaaaa 3617167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 430
Target Start/End: Original strand, 10824286 - 10824326
Alignment:
Q  390 ttcaacacttttcaacaaattatttttatttatgttctctt 430  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  10824286 ttcaccactttccaacaaattatttttatttatgttctctt 10824326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 11175798 - 11175860
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    |||||||||| ||||||||||||||| | ||  |||  |||||||||||||||||||| ||||    
T  11175798 agttggtatggacaatgcataatatatgcaagatctggggttcaaactccggccaccacaaaa 11175860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 29872220 - 29872174
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaac 251  Q
    |||||||||||||||| ||||||||| | || |||||||||||||||    
T  29872220 agttggtatgaacaatacataatatatgcaaggtctaaggttcaaac 29872174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 41859865 - 41859927
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    |||||||||| ||||||||||| ||| | || ||||  ||||||||| |||||||||||||||    
T  41859865 agttggtatggacaatgcataaaatatgcaaggtctggggttcaaaccccggccaccataaaa 41859927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 20200723 - 20200780
Alignment:
Q  210 gtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    ||||||||||||||||||||| | || ||| | ||||||||| |||||||||| ||||    
T  20200723 gtatgaacaatgcataatatatgcaaggtccagggttcaaaccccggccaccacaaaa 20200780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 34191356 - 34191311
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaa 250  Q
    |||||||| | ||||||||||||||| |||| ||||||||||||||    
T  34191356 agttggtagggacaatgcataatatatgtaaagtctaaggttcaaa 34191311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 14735939 - 14735879
Alignment:
Q  207 ttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    |||||||| ||||||||||| ||| |||| ||   ||||||||||||||||||||| ||||    
T  14735939 ttggtatggacaatgcataaaatatgtaaggttcgaggttcaaactccggccaccacaaaa 14735879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 322 - 403
Target Start/End: Original strand, 21814169 - 21814250
Alignment:
Q  322 tgttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    |||||| |||| ||||| || || ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||    
T  21814169 tgttaaggaaattaaaaatactagttttgcattggaaattataactttttgacttttagaaaattgaattcaacacttttca 21814250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 323 - 401
Target Start/End: Original strand, 15005786 - 15005864
Alignment:
Q  323 gttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacactttt 401  Q
    ||||| |||||||||||||||| ||||||||||  |||||||| ||||| ||||||| ||| |||||||||||||||||    
T  15005786 gttaaggaaactaaaagtagtagttttgcattgaaaattacaattttttaacttttacaaagttgaattcaacactttt 15005864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 41998862 - 41998942
Alignment:
Q  323 gttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    ||||| |||||||||||||||| |||||| |||  ||||||||| |||| ||||||| ||| ||||||| |||||||||||    
T  41998862 gttaaggaaactaaaagtagtagttttgctttgaaaattacaacatttttacttttataaagttgaatttaacacttttca 41998942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 401
Target Start/End: Complemental strand, 15502765 - 15502687
Alignment:
Q  323 gttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacactttt 401  Q
    ||||| |||||||||| ||| | ||||| ||||| |||||||| ||||| ||||||| ||| |||||||||||| ||||    
T  15502765 gttaaggaaactaaaaatagcagttttgtattggaaattacaattttttaacttttaaaaagttgaattcaacattttt 15502687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 46903921 - 46903983
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    |||||||||| ||||||||||||||| |||| ||| | ||||||||||||||| |||| ||||    
T  46903921 agttggtatggacaatgcataatatatgtaaggtccagggttcaaactccggcaaccacaaaa 46903983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 42074119 - 42074172
Alignment:
Q  208 tggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccacc 261  Q
    ||||||||||||||||||||||| | || |||| |||||| |||||||||||||    
T  42074119 tggtatgaacaatgcataatatatgcaaggtctgaggttcgaactccggccacc 42074172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 428
Target Start/End: Original strand, 1165813 - 1165851
Alignment:
Q  390 ttcaacacttttcaacaaattatttttatttatgttctc 428  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  1165813 ttcatcacttttcaacaaattatttctatttatgttctc 1165851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 11616963 - 11617009
Alignment:
Q  138 ttttatttaaataagatatatatcttttgaaacaatttcaaaaccat 184  Q
    |||| ||||||||| |||||||| |||||||| ||||||||||||||    
T  11616963 ttttttttaaataaaatatatatattttgaaataatttcaaaaccat 11617009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 391
Target Start/End: Complemental strand, 22455466 - 22455404
Alignment:
Q  329 gaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaatt 391  Q
    |||||||||||||||| ||||| ||| | ||||||||||||   ||||||||||| |||||||    
T  22455466 gaaactaaaagtagtagttttgtattagaaattacaactttcaaacttttagaaagttgaatt 22455404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 25441548 - 25441486
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    |||||||||| ||||||||||||||| | || ||||  ||||||||| |||||||||| ||||    
T  25441548 agttggtatggacaatgcataatatatgcaaggtctggggttcaaaccccggccaccacaaaa 25441486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 45885525 - 45885463
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    |||||||||| ||  ||||||||||| | || |||| |||||||||| |||||||||||||||    
T  45885525 agttggtatggaccttgcataatatatgcaaggtctgaggttcaaaccccggccaccataaaa 45885463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 28430613 - 28430556
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccacca 262  Q
    |||||||| ||||||||||||||||| | || |||| |||||||||||| | ||||||    
T  28430613 agttggtacgaacaatgcataatatatgcaaggtctgaggttcaaactctgaccacca 28430556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 3084002 - 3084057
Alignment:
Q  345 attttgcattgggaattacaactttttgacttttagaaatttgaattcaacactttt 401  Q
    |||||||||||| |||||||||||||| | ||||||||| || || |||||||||||    
T  3084002 attttgcattggaaattacaacttttt-aattttagaaagttaaactcaacactttt 3084057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 22478485 - 22478445
Alignment:
Q  329 gaaactaaaagtagtaattttgcattgggaattacaacttt 369  Q
    |||||||||||||||||||||| ||| | ||||||||||||    
T  22478485 gaaactaaaagtagtaattttgtattagaaattacaacttt 22478445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 430
Target Start/End: Original strand, 41998947 - 41998979
Alignment:
Q  398 ttttcaacaaattatttttatttatgttctctt 430  Q
    ||||||||||||||||| |||||||||||||||    
T  41998947 ttttcaacaaattatttctatttatgttctctt 41998979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 376 - 416
Target Start/End: Complemental strand, 44121732 - 44121692
Alignment:
Q  376 tttagaaatttgaattcaacacttttcaacaaattattttt 416  Q
    |||||||| || ||||||||| |||||||||||||||||||    
T  44121732 tttagaaagttaaattcaacatttttcaacaaattattttt 44121692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 62705 - 62627
Alignment:
Q  324 ttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    |||| ||||||||||||||||||||||||||   ||||| || ||||| ||||||||||| |||||||||||||||||||    
T  62705 ttaaggaaactaaaagtagtaattttgcattaaaaattataa-tttttaacttttagaaagttgaattcaacacttttca 62627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 70037 - 69959
Alignment:
Q  324 ttaaagaaactaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    |||| ||||||||||||||||||||||||||   ||||| || ||||| ||||||||||| |||||||||||||||||||    
T  70037 ttaaggaaactaaaagtagtaattttgcattaaaaattataa-tttttaacttttagaaagttgaattcaacacttttca 69959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 403
Target Start/End: Complemental strand, 9128 - 9057
Alignment:
Q  332 actaaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaattcaacacttttca 403  Q
    ||||||||| ||| ||||||||||  | |||||| ||||||||||||| ||| |||||||||||||||||||    
T  9128 actaaaagtggtagttttgcattgaaagttacaattttttgacttttaaaaagttgaattcaacacttttca 9057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 430
Target Start/End: Original strand, 29311 - 29415
Alignment:
Q  335 aaaagtagtaattttgcattgggaattacaactttttgacttttagaaatttgaat---------tcaacacttttcaacaaattatttttatttatgtt 425  Q
    |||| ||||| ||||| |||||||| ||||||||| ||||||||||||| ||||||         ||| || |||| |||||||||||||||||||||||    
T  29311 aaaaatagtagttttgtattgggaactacaactttatgacttttagaaagttgaattaacatttctcaccattttttaacaaattatttttatttatgtt 29410  T
Q  426 ctctt 430  Q
    |||||    
T  29411 ctctt 29415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0350 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 1261 - 1323
Alignment:
Q  205 agttggtatgaacaatgcataatatacgtaacgtctaaggttcaaactccggccaccataaaa 267  Q
    ||||| |||| ||||||||||||||| |||| ||||   ||||||||||||||||||| ||||    
T  1261 agttgatatggacaatgcataatatatgtaaggtctggagttcaaactccggccaccacaaaa 1323  T

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