View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6623_low_20 (Length: 259)

Name: NF6623_low_20
Description: NF6623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6623_low_20
NF6623_low_20
[»] chr5 (6 HSPs)
chr5 (1-243)||(6318844-6319101)
chr5 (158-243)||(6319385-6319470)
chr5 (56-164)||(6328021-6328129)
chr5 (56-169)||(24696825-24696938)
chr5 (56-162)||(19708560-19708666)
chr5 (5-53)||(6327955-6328003)
[»] chr6 (5 HSPs)
chr6 (56-162)||(17685810-17685916)
chr6 (56-162)||(27277476-27277582)
chr6 (56-162)||(27295968-27296074)
chr6 (56-162)||(27302367-27302473)
chr6 (56-162)||(29314609-29314715)
[»] chr4 (5 HSPs)
chr4 (56-162)||(18267828-18267934)
chr4 (56-162)||(10622675-10622781)
chr4 (56-162)||(26969227-26969333)
chr4 (57-162)||(19920761-19920866)
chr4 (56-162)||(5712706-5712812)
[»] scaffold0705 (1 HSPs)
scaffold0705 (56-162)||(1129-1235)
[»] scaffold0234 (2 HSPs)
scaffold0234 (56-162)||(3662-3768)
scaffold0234 (56-162)||(12552-12658)
[»] chr7 (3 HSPs)
chr7 (56-162)||(15151135-15151241)
chr7 (68-162)||(11537403-11537497)
chr7 (56-109)||(12749592-12749645)
[»] chr3 (5 HSPs)
chr3 (56-162)||(13247367-13247473)
chr3 (56-162)||(15602226-15602332)
chr3 (60-135)||(18509638-18509713)
chr3 (60-135)||(18521379-18521454)
chr3 (56-162)||(15352325-15352431)
[»] scaffold0433 (1 HSPs)
scaffold0433 (57-162)||(5868-5973)
[»] scaffold0390 (1 HSPs)
scaffold0390 (57-162)||(8276-8381)
[»] chr8 (3 HSPs)
chr8 (56-135)||(24641396-24641475)
chr8 (56-162)||(22170248-22170354)
chr8 (68-169)||(28553667-28553768)
[»] scaffold0063 (1 HSPs)
scaffold0063 (68-154)||(4297-4383)
[»] chr1 (1 HSPs)
chr1 (56-116)||(3855187-3855247)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 6318844 - 6319101
Alignment:
Q  1 ctaaggggttgtaaacgggctatattcaaagaagagactagatgtcatagaat---------------tttacacaaatcaaatatggatattagttgtt 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||    
T  6318844 ctaaggggttgtaaacgggctatattcaaagaagagactagatgtcatagaatcttatatggagttcatttacacaaatcaaatatggatattagttgtt 6318943  T
Q  86 tcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattctgaatacaattaagtctgatatgtatactt 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  6318944 tcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattccgaatacaattaagtctgatatgtattctt 6319043  T
Q  186 ttaggctaaattttaacataaattttacaaaaccgagccacttataaacacatgttta 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6319044 ttaggctaaattttaacataaattttacaaaaccgagccacttataaacacatgttta 6319101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 6319385 - 6319470
Alignment:
Q  158 aatacaattaagtctgatatgtatacttttaggctaaattttaacataaattttacaaaaccgagccacttataaacacatgttta 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6319385 aatacaattaagtctgatatgtatacttttaggctaaattttaacataaattttacaaaaccgagccacttataaacacatgttta 6319470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 6328021 - 6328129
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||| | | ||||||||||  ||||||||||| |||||||||||||||||||||     
T  6328021 tacacaaatcagatatggatattagttgtttcatctaaatgagtaagacccgtgtgatgaaaatcagtcttcttataaaagattaacatggacggtattt 6328120  T
Q  156 tgaatacaa 164  Q
    |||||||||    
T  6328121 tgaatacaa 6328129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 24696938 - 24696825
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | | ||||||| ||||||     
T  24696938 tacacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactgacatggatggtatta 24696839  T
Q  156 tgaatacaattaag 169  Q
    |||||||| |||||    
T  24696838 tgaatacatttaag 24696825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 19708666 - 19708560
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | | ||||||| ||||||     
T  19708666 tacacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactgacatggatggtatta 19708567  T
Q  156 tgaatac 162  Q
    |||||||    
T  19708566 tgaatac 19708560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 6327955 - 6328003
Alignment:
Q  5 ggggttgtaaacgggctatattcaaagaagagactagatgtcatagaat 53  Q
    ||||||||||| ||  |||||||||| ||| ||||||||||||||||||    
T  6327955 ggggttgtaaatggaatatattcaaataagtgactagatgtcatagaat 6328003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 17685916 - 17685810
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | ||||||||| ||||||     
T  17685916 tacacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactaacatggatggtatta 17685817  T
Q  156 tgaatac 162  Q
    |||||||    
T  17685816 tgaatac 17685810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 27277476 - 27277582
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | | ||||||| ||||||     
T  27277476 tacacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactgacatggatggtatta 27277575  T
Q  156 tgaatac 162  Q
    |||||||    
T  27277576 tgaatac 27277582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 27295968 - 27296074
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | | ||||||| ||||||     
T  27295968 tacacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactgacatggatggtatta 27296067  T
Q  156 tgaatac 162  Q
    |||||||    
T  27296068 tgaatac 27296074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 27302367 - 27302473
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | | ||||||| ||||||     
T  27302367 tacacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactgacatggatggtatta 27302466  T
Q  156 tgaatac 162  Q
    |||||||    
T  27302467 tgaatac 27302473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 29314609 - 29314715
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || ||||||||||| ||| | |||||||||||||||  ||||||| ||||||  || || ||||| ||||| | | ||||||| | ||||     
T  29314609 tacacaaaccatatatggatattggttatatcatccaaatgagtatcactcataagatgaatgtgagttttcttgtagaaaactgacatggatgatatta 29314708  T
Q  156 tgaatac 162  Q
    |||||||    
T  29314709 tgaatac 29314715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 18267828 - 18267934
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | ||||||||| ||||||     
T  18267828 tacacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactaacatggatggtatta 18267927  T
Q  156 tgaatac 162  Q
    |||||||    
T  18267928 tgaatac 18267934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 10622781 - 10622675
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | | ||||||| ||||||     
T  10622781 tacacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactgacatggatggtatta 10622682  T
Q  156 tgaatac 162  Q
    |||||||    
T  10622681 tgaatac 10622675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 26969227 - 26969333
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | | ||||||| ||||||     
T  26969227 tacacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactgacatggatggtatta 26969326  T
Q  156 tgaatac 162  Q
    |||||||    
T  26969327 tgaatac 26969333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 19920866 - 19920761
Alignment:
Q  57 acacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattct 156  Q
    ||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | | ||||||| |||||| |    
T  19920866 acacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactgacatggatggtattat 19920767  T
Q  157 gaatac 162  Q
    ||||||    
T  19920766 gaatac 19920761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 5712706 - 5712812
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || |||||| |||| |||   ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | | ||||||| ||||||     
T  5712706 tacacaaaccatatatgggtattggttacatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactgacatggatggtatta 5712805  T
Q  156 tgaatac 162  Q
    |||||||    
T  5712806 tgaatac 5712812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0705 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0705
Description:

Target: scaffold0705; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 1235 - 1129
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | | ||||||| ||||||     
T  1235 tacacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactgacatggatggtatta 1136  T
Q  156 tgaatac 162  Q
    |||||||    
T  1135 tgaatac 1129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 3768 - 3662
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | | ||||||| ||||||     
T  3768 tacacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactgacatggatggtatta 3669  T
Q  156 tgaatac 162  Q
    |||||||    
T  3668 tgaatac 3662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 12658 - 12552
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | | ||||||| ||||||     
T  12658 tacacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactgacatggatggtatta 12559  T
Q  156 tgaatac 162  Q
    |||||||    
T  12558 tgaatac 12552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 15151135 - 15151241
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    ||||||||||| ||||||||||| ||| | | ||||||||||||| |||||||| ||||||  || || ||||||| ||| | | ||||||| ||||||     
T  15151135 tacacaaatcatatatggatattggttatattatccaaatgagtatgactcataagatgaatgtgagttttcttatggaaaactgacatggatggtatta 15151234  T
Q  156 tgaatac 162  Q
    |||||||    
T  15151235 tgaatac 15151241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 11537497 - 11537403
Alignment:
Q  68 atatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattctgaatac 162  Q
    ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | | ||||||| |||||| |||||||    
T  11537497 atatggatattggttatatcatccaaatgagtatgactcataagatgaatttgagttttcttgtagaaaactgacatggatggtattatgaatac 11537403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 12749592 - 12749645
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcata 109  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| ||||||||    
T  12749592 tacacaaaccatatatggatattggttatatcatccaaatgagtatgactcata 12749645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 13247367 - 13247473
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | | ||||||| ||||||     
T  13247367 tacacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactgacatggatggtatta 13247466  T
Q  156 tgaatac 162  Q
    |||||||    
T  13247467 tgaatac 13247473  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 15602332 - 15602226
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | | ||||||| ||||||     
T  15602332 tacacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactgacatggatggtatta 15602233  T
Q  156 tgaatac 162  Q
    |||||||    
T  15602232 tgaatac 15602226  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 18509638 - 18509713
Alignment:
Q  60 caaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaa 135  Q
    ||||||| ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || |||||||||||    
T  18509638 caaatcatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttatagaa 18509713  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 18521379 - 18521454
Alignment:
Q  60 caaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaa 135  Q
    ||||||| ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || |||||||||||    
T  18521379 caaatcatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttatagaa 18521454  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 15352431 - 15352325
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || ||||||||||| ||| | ||||||||||||| | |||||||| ||||||  || || ||||| ||||| | | ||||||| ||||||     
T  15352431 tacacaaaccatatatggatattggttatatcatccaaatgaggatgactcataagatgaatgtgagttttcttgtagaaaactgacatggatggtatta 15352332  T
Q  156 tgaatac 162  Q
    |||||||    
T  15352331 tgaatac 15352325  T

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Target: scaffold0433 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 5868 - 5973
Alignment:
Q  57 acacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattct 156  Q
    ||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | | ||||||| |||||| |    
T  5868 acacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactgacatggatggtattat 5967  T
Q  157 gaatac 162  Q
    ||||||    
T  5968 gaatac 5973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 8381 - 8276
Alignment:
Q  57 acacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattct 156  Q
    ||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||| ||||| | | ||||||| |||||| |    
T  8381 acacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttgtagaaaactgacatggatggtattat 8282  T
Q  157 gaatac 162  Q
    ||||||    
T  8281 gaatac 8276  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 24641396 - 24641475
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaa 135  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || |||||||||||    
T  24641396 tacacaaaccatatatggatatttgttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttatagaa 24641475  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 22170248 - 22170354
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattc 155  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| || ||||| ||||||  || || ||||| ||||| | | ||||||| ||||||     
T  22170248 tacacaaaccatatatggatattggttatatcatccaaatgagtatgattcataagatgaatgtgagttttcttgtagaaaactgacatggatggtatta 22170347  T
Q  156 tgaatac 162  Q
    |||||||    
T  22170348 tgaatac 22170354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 169
Target Start/End: Original strand, 28553667 - 28553768
Alignment:
Q  68 atatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtattctgaatacaatta 167  Q
    ||||||||||| ||| | |||| |||||||||| ||||||||  |||||  || || ||||| ||||| | ||||||||| |||||| |||||||| |||    
T  28553667 atatggatattggttatatcatacaaatgagtatgactcataaaatgaatgtgagttttcttgtagaaaactaacatggatggtattatgaatacattta 28553766  T
Q  168 ag 169  Q
    ||    
T  28553767 ag 28553768  T

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Target: scaffold0063 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 154
Target Start/End: Original strand, 4297 - 4383
Alignment:
Q  68 atatggatattagttgtttcatccaaatgagtaagactcatatgatgaaaatgggtcttcttatagaagattaacatggacggtatt 154  Q
    ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  || || ||||||||||| | | ||||||| ||||||    
T  4297 atatggatattggttatatcatccaaatgagtatgactcataagatgaatgtgagttttcttatagaaaactgacatggatggtatt 4383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 3855247 - 3855187
Alignment:
Q  56 tacacaaatcaaatatggatattagttgtttcatccaaatgagtaagactcatatgatgaa 116  Q
    |||||||| || ||||||||||| ||| | ||||||||||||||| |||||||| ||||||    
T  3855247 tacacaaaccatatatggatattggttatatcatccaaatgagtatgactcataagatgaa 3855187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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