View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6623_low_23 (Length: 250)
Name: NF6623_low_23
Description: NF6623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6623_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 44284948 - 44284706
Alignment:
| Q |
1 |
aagaaattataaaaagtatnnnnnnngcaagtgaaatatttttcttactaacctctttgaactat-aagactgaatattgacatgaaaatttaaacaata |
99 |
Q |
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| T |
44284948 |
aagaaattataagaagtataaaaaaagcaagtgaaatatttttcttactgacctctttgaactattaagactgaatattgacatgaaaatttaaacaata |
44284849 |
T |
|
| Q |
100 |
ttgttgaccatagaatgtacaagtcaaaagtaacaagcatgagataaagaatattccatcaattattcttcaaactttacaagaattatactttgccatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44284848 |
ttgttgaccatagaatgtacaagtcaaaagtaacaagcatgagataaagaatattccatcaattattcttcaaactttacaagaattatactttgccatt |
44284749 |
T |
|
| Q |
200 |
ttgagcatcaatattcctaactggccccttaaaccatattctt |
242 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44284748 |
ttgagcatcaatattcctaactggccccttaaaccattttctt |
44284706 |
T |
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