View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6623_low_24 (Length: 240)
Name: NF6623_low_24
Description: NF6623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6623_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 44286453 - 44286650
Alignment:
| Q |
27 |
attttaatgtgtgaagaacatggtcaaatccacagcatgcccaggcccggctatgtgtgttgcaacaataatttgacacgtacacagactaatggggcaa |
126 |
Q |
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| T |
44286453 |
attttaatgtgtgaagaacatggtcaaatccacagcatgcccaggcccggctatgtgtgttgcaacaataatttgacacgtacacagactaatggggcaa |
44286552 |
T |
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| Q |
127 |
tgtatgggacacatttggacatttaggggtcaaaattaggacaa-tatgtatgttatttcaaaaacctaatttgtcacgtagtatttgattcgaatgt |
223 |
Q |
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| T |
44286553 |
tgtatgggacacatttggacatttaggggtcaaaattaggacaattatgtatgttatttcaaaaacctaatttgtcacgtagtatttgattcgaatgt |
44286650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 44285202 - 44285232
Alignment:
| Q |
1 |
taccatgttgtatgtaacggcccttgatttt |
31 |
Q |
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| T |
44285202 |
taccatgttgtatgtaacggcccttgatttt |
44285232 |
T |
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