View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6623_low_4 (Length: 550)
Name: NF6623_low_4
Description: NF6623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6623_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 512; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 10 - 536
Target Start/End: Complemental strand, 38950430 - 38949903
Alignment:
| Q |
10 |
acatcatcagaaaagcagaagaggggaagaggaagagcgcccctgccgccgaggccaaaaatgtgaaagaagcaacggtcttgaggaaacaatttgcacc |
109 |
Q |
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| T |
38950430 |
acatcatcagaaaagcagaagaggggaagaggaagagcgcccctgccgccgaggccaaaaatgtgaaagaagcaacggtcttgaggaaacaatttgcacc |
38950331 |
T |
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| Q |
110 |
gctagacttcgccagaacattggctcatcttcatcacctgacatctacaaccctgaagctggtagaatcaaaactgtcaccagctttgacctcccagctc |
209 |
Q |
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| T |
38950330 |
gctagacttcgccagaacattggctcatcttcatcacctgacatctacaaccctgaagctggtagaatcaaaactgtcaccagctttgacctcccagctc |
38950231 |
T |
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| Q |
210 |
taaggtggctcagactcagtgctgaacatggaactctccacagggtaaatttgttattt-cttttaatttaagttcaacattactggaaatgttggaaag |
308 |
Q |
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| T |
38950230 |
taaggtggctcagactcagtgctgaacatggaactctccacagggtaaatttgttattttcttttaatttgagttcaacattactggaaatgttggaaag |
38950131 |
T |
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| Q |
309 |
taatagctaactcaataaaatgtccatacagaatgctatgttcgtgccacactacaatctgaatgcaaacagcgcaatatacgcattgaggggacgtgca |
408 |
Q |
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| T |
38950130 |
taatagctaactcaataaaatgtccatacagaatgctatgttcgtgccacactacaatctgaatgcaaacagcgcaatatacgcattgaggggacgtgca |
38950031 |
T |
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| Q |
409 |
cggttacaagtagtgaactgcaatggcaacactgtgtttgatggcgaacttgaagccggtcgcgtgttgatagtaccacaaaattttgctgtagctgcaa |
508 |
Q |
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| T |
38950030 |
cggttacaagtagtgaactgcaatggcaacactgtgtttgatggcgaacttgaagccggtcgcgtgttgatagtaccacaaaattttgctgtagctgcaa |
38949931 |
T |
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| Q |
509 |
aatcaacgagcgacaggttccagtatgt |
536 |
Q |
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| T |
38949930 |
aatcaatgagcgacaggttccagtatgt |
38949903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 82 - 252
Target Start/End: Complemental strand, 38942922 - 38942752
Alignment:
| Q |
82 |
caacggtcttgaggaaacaatttgcaccgctagacttcgccagaacattggctcatcttcatcacctgacatctacaaccctgaagctggtagaatcaaa |
181 |
Q |
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| T |
38942922 |
caacggtcttgcggaaacaatttgcactgccaggcttcaccagaacatggtctcatcttcatcacctgacatctacaaccctcaagctggtagaatcaaa |
38942823 |
T |
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| Q |
182 |
actgtcaccagctttgacctcccagctctaaggtggctcagactcagtgctgaacatggaactctccacag |
252 |
Q |
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| T |
38942822 |
actatcaccagcttcgacctcccagctctcaggtggctaagactcagtgctgagcatggaactctccacag |
38942752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 336 - 528
Target Start/End: Complemental strand, 38942667 - 38942475
Alignment:
| Q |
336 |
acagaatgctatgttcgtgccacactacaatctgaatgcaaacagcgcaatatacgcattgaggggacgtgcacggttacaagtagtgaactgcaatggc |
435 |
Q |
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| T |
38942667 |
acagaatgctatgttcgttccacactacaatctcaatgcaaacagcataatattggcattgaatggacgtgcaaggctacaagtagtgaactgcaatggc |
38942568 |
T |
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| Q |
436 |
aacactgtgtttgatggcgaacttgaagccggtcgcgtgttgatagtaccacaaaattttgctgtagctgcaaaatcaacgagcgacaggttc |
528 |
Q |
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| T |
38942567 |
aacactgtgttcgatgaggaactagaagctggccgtgcattgatcgtgccacaaaactttgctgttgcagcaaaatcagtgagcgacaggttc |
38942475 |
T |
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