View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6623_low_5 (Length: 524)
Name: NF6623_low_5
Description: NF6623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6623_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 16905481 - 16905328
Alignment:
| Q |
18 |
tggatctgtataagtttttctaaagttatcaacgagtttataatttaattaaaaag-ttatttaaatggctgtcaacaaacattattaattt-accttgt |
115 |
Q |
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| T |
16905481 |
tggatctgtataagtttttctaaagttatcaaggagtttataatttaattaaaaaaattatttaaatggctataaaaaaacattattaattttaccttgt |
16905382 |
T |
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| Q |
116 |
cgaaaaatgataaacaataagtcgcatttttatgaaagacatttggctttcctc |
169 |
Q |
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| T |
16905381 |
caaaaaatgataaacaatatgtcgcatttttatgaaagacatttggctttcctc |
16905328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 407 - 504
Target Start/End: Complemental strand, 16905221 - 16905124
Alignment:
| Q |
407 |
tagtgttgaatgatgtcgaagagggcaggagttaggtgtagttggaggtgtatgttgtttgaatgggaggaagagttggttgtggagtgtattctttt |
504 |
Q |
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| T |
16905221 |
tagtgttgaatgatgtagaagagggcaggagttaggtgtagttggaggtgcatgttgtttgaatgtgaggaagagttgttcgtggagtgtattttttt |
16905124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 497
Target Start/End: Original strand, 447107 - 447144
Alignment:
| Q |
460 |
gttgtttgaatgggaggaagagttggttgtggagtgta |
497 |
Q |
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| T |
447107 |
gttgtttgcatgggaggaagagttggtggtggagtgta |
447144 |
T |
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