View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6623_low_8 (Length: 474)

Name: NF6623_low_8
Description: NF6623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6623_low_8
NF6623_low_8
[»] chr6 (9 HSPs)
chr6 (244-459)||(33965641-33965857)
chr6 (39-121)||(31899224-31899305)
chr6 (48-121)||(12336174-12336247)
chr6 (42-121)||(20564828-20564908)
chr6 (42-123)||(3415667-3415748)
chr6 (41-121)||(8460774-8460859)
chr6 (47-121)||(34316053-34316129)
chr6 (86-130)||(1309321-1309365)
chr6 (93-121)||(14373634-14373662)
[»] chr8 (5 HSPs)
chr8 (272-458)||(43077266-43077458)
chr8 (47-121)||(27420332-27420406)
chr8 (47-121)||(42747271-42747352)
chr8 (54-121)||(14919118-14919190)
chr8 (88-128)||(40323849-40323889)
[»] chr7 (10 HSPs)
chr7 (47-121)||(44521467-44521541)
chr7 (46-123)||(13851669-13851751)
chr7 (47-121)||(10427830-10427905)
chr7 (83-121)||(18014778-18014816)
chr7 (80-121)||(19727931-19727973)
chr7 (83-121)||(45458885-45458923)
chr7 (42-118)||(31430384-31430461)
chr7 (85-125)||(9979268-9979307)
chr7 (93-121)||(20574237-20574265)
chr7 (48-121)||(37517282-37517357)
[»] chr2 (10 HSPs)
chr2 (47-119)||(11002389-11002463)
chr2 (47-121)||(16238682-16238756)
chr2 (47-121)||(22670000-22670074)
chr2 (80-135)||(32244253-32244309)
chr2 (65-96)||(12111192-12111223)
chr2 (90-121)||(19177493-19177524)
chr2 (88-130)||(32417427-32417468)
chr2 (88-121)||(44472826-44472859)
chr2 (85-121)||(14432770-14432806)
chr2 (93-121)||(28252190-28252218)
[»] chr4 (7 HSPs)
chr4 (47-120)||(22197656-22197729)
chr4 (63-121)||(30898565-30898626)
chr4 (83-121)||(19836587-19836625)
chr4 (47-121)||(37113208-37113282)
chr4 (90-128)||(41908647-41908685)
chr4 (85-121)||(14137138-14137174)
chr4 (85-121)||(45607465-45607501)
[»] chr3 (6 HSPs)
chr3 (47-121)||(55339395-55339470)
chr3 (83-121)||(40969666-40969704)
chr3 (86-121)||(31644381-31644416)
chr3 (39-121)||(20358052-20358134)
chr3 (47-126)||(37268884-37268965)
chr3 (83-132)||(53050399-53050448)
[»] chr5 (3 HSPs)
chr5 (47-121)||(9064530-9064604)
chr5 (88-121)||(2680587-2680620)
chr5 (66-121)||(27677962-27678022)
[»] chr1 (6 HSPs)
chr1 (85-121)||(22174719-22174755)
chr1 (87-121)||(13383440-13383474)
chr1 (67-121)||(16237002-16237056)
chr1 (76-121)||(48249973-48250018)
chr1 (85-121)||(16428074-16428110)
chr1 (85-121)||(51169535-51169571)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 244 - 459
Target Start/End: Original strand, 33965641 - 33965857
Alignment:
Q  244 aatgtagaaaaatagaaagtattttttgg-ttacatactttgaatgtgatgttcttagcaatgaaataaggtgaattaactgcaaaagttgctgaaccat 342  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33965641 aatgtagaaaaatagaaagtagtttttgggttacatactttgaatgtgatgttcttggcaatgaaataaggtgaattaactgcaaaagttgctgaaccat 33965740  T
Q  343 atgttcccaatggattccctcttggaccaggtgttgcagcagtgtcaccccattgaacaattgttgtatctgcaccatctccttctatggttatgaagga 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33965741 atgttcccaatggattccctcttggaccaggtgttgcagcagtgtcaccccattgaacaattgttgtatctgcaccatctccttctatggttatgaagga 33965840  T
Q  443 ttttaaaggaggaatgt 459  Q
    |||||||||||||||||    
T  33965841 ttttaaaggaggaatgt 33965857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 31899224 - 31899305
Alignment:
Q  39 tggtttgtgtgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    ||||||| ||||||||| | ||| || ||| | |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31899224 tggtttgggtgattctcatttgcacgtcttatacgagatgaatca-ttttgttaatatatttcattttggcttgttcaaaaaa 31899305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 12336174 - 12336247
Alignment:
Q  48 tgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    |||||||||| ||| | |||||||||||||||||||||| || | ||  |||||||||||||||||||||||||    
T  12336174 tgattctcttttgcacaccttgtgcgagatgaatcacttctggttattaatttcattttggcttgttcaaaaaa 12336247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 20564908 - 20564828
Alignment:
Q  42 tttgtgtgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaatat-atttcattttggcttgttcaaaaaa 121  Q
    |||| |||||| |||| ||| |||||| || |||||||||||||  ||||||||| ||||||||||||| |||||||||||    
T  20564908 tttgggtgattatcttttgcacgccttatgtgagatgaatcactcgtgttaatataatttcattttggcctgttcaaaaaa 20564828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 3415667 - 3415748
Alignment:
Q  42 tttgtgtgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaatatatttcattttggcttgttcaaaaaata 123  Q
    |||| ||||||||||| ||| |||||||||| |||||||| |||| || ||||| ||| |||||| ||||||  ||||||||    
T  3415667 tttgggtgattctcttatgcacgccttgtgcaagatgaattacttatgctaatagattccattttagcttgtcaaaaaaata 3415748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 8460774 - 8460859
Alignment:
Q  41 gtttgtgtgattctcttgtgctcgccttgtgcgagatgaatcac---ttttg--ttaatatatttcattttggcttgttcaaaaaa 121  Q
    |||| |||| ||||||| ||| ||||||||||||||||||||||   |||||  |||||  ||| |||||||||||||||||||||    
T  8460774 gtttttgtggttctcttttgcacgccttgtgcgagatgaatcactcattttgttttaattaattccattttggcttgttcaaaaaa 8460859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 34316129 - 34316053
Alignment:
Q  47 gtgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaa--tatatttcattttggcttgttcaaaaaa 121  Q
    |||| |||||| ||| | |||| |||||||||||||||||||||| |  ||||||| ||||||| ||||| ||||||    
T  34316129 gtgaatctcttttgcacaccttttgcgagatgaatcacttttgttgagttatattttattttggtttgttaaaaaaa 34316053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 1309321 - 1309365
Alignment:
Q  86 tttgttaatatatttcattttggcttgttcaaaaaatatattata 130  Q
    ||||||||||||| ||||||||||||||| |||||| | ||||||    
T  1309321 tttgttaatatatctcattttggcttgttaaaaaaaaaaattata 1309365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 14373634 - 14373662
Alignment:
Q  93 atatatttcattttggcttgttcaaaaaa 121  Q
    |||||||||||||||||||||||||||||    
T  14373634 atatatttcattttggcttgttcaaaaaa 14373662  T

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Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 272 - 458
Target Start/End: Complemental strand, 43077458 - 43077266
Alignment:
Q  272 gttacatactttgaatgtgatgttcttagcaatgaaataaggtgaattaactgcaaaagttgctgaaccatatgttcccaatggattccctctt------ 365  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| | ||  |  ||| ||          
T  43077458 gttacttactttgaatgtgatgttcttagcaatgaaataaggtgaattcactgcaaaagttgccgaaccataagttcctagtgtctgtccttttgctcca 43077359  T
Q  366 ggaccaggtgttgcagcagtgtcaccccattgaacaattgttgtatctgcaccatctccttctatggttatgaaggattttaaaggaggaatg 458  Q
    |||  ||| |||  |||||||||||||||||||||||||||| ||||||||||  |||||| |||||||||||| |||||||| | |||||||    
T  43077358 ggattaggagttagagcagtgtcaccccattgaacaattgttttatctgcacctgctccttgtatggttatgaatgattttaatgcaggaatg 43077266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 27420406 - 27420332
Alignment:
Q  47 gtgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    ||||||||||| ||| | |||||||||||||||||||||| || | ||  |||  ||||||||||||||||||||    
T  27420406 gtgattctcttttgcacaccttgtgcgagatgaatcacttctggttattaattctattttggcttgttcaaaaaa 27420332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 42747271 - 42747352
Alignment:
Q  47 gtgattctcttgtgctcgccttgtgcgagatgaatca-cttttgtta------atatatttcattttggcttgttcaaaaaa 121  Q
    ||||||||||| ||| | ||||||||||||||||||| |||| || |      |||||||||||||||||||||||||||||    
T  42747271 gtgattctcttttgcacaccttgtgcgagatgaatcatctttggtgatataatatatatttcattttggcttgttcaaaaaa 42747352  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 14919118 - 14919190
Alignment:
Q  54 tcttgtgctcgccttgtgcgagatgaatcacttttgt-----taatatatttcattttggcttgttcaaaaaa 121  Q
    |||| ||| |||||||||||||||||||||||| |||     ||||||||| ||||||| |||||| ||||||    
T  14919118 tcttttgcacgccttgtgcgagatgaatcacttgtgttgatctaatatattccattttgacttgttaaaaaaa 14919190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 40323889 - 40323849
Alignment:
Q  88 tgttaatatatttcattttggcttgttcaaaaaatatatta 128  Q
    |||||||||| |||||||||||||||| |||||| ||||||    
T  40323889 tgttaatataattcattttggcttgttaaaaaaaaatatta 40323849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 44521541 - 44521467
Alignment:
Q  47 gtgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    ||||||||||| ||| | |||||||||||||||||||||| || | ||| | |||||||||||||||||||||||    
T  44521541 gtgattctcttttgcacaccttgtgcgagatgaatcacttctggttataaaattcattttggcttgttcaaaaaa 44521467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 13851669 - 13851751
Alignment:
Q  46 tgtgattctcttgtgctcgccttgtgcgagatgaatcact-tttgt----taatatatttcattttggcttgttcaaaaaata 123  Q
    |||| ||||||| ||| | |||||| |||||||||||||| |||||    |||||||||| ||||||||||||||||||||||    
T  13851669 tgtggttctcttttgcacaccttgtacgagatgaatcactctttgtgatctaatatattttattttggcttgttcaaaaaata 13851751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 10427830 - 10427905
Alignment:
Q  47 gtgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaatat-atttcattttggcttgttcaaaaaa 121  Q
    ||||||||||| ||| | ||||||||||||||||||||||||| | || | |||||||||||  || |||||||||    
T  10427830 gtgattctcttttgcacaccttgtgcgagatgaatcacttttggtgatttaatttcattttgatttcttcaaaaaa 10427905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 18014816 - 18014778
Alignment:
Q  83 acttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  18014816 acttttgttaatatatctcattttgccttgttcaaaaaa 18014778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 19727973 - 19727931
Alignment:
Q  80 atcacttttgttaatata-tttcattttggcttgttcaaaaaa 121  Q
    |||||||||| ||||||| ||||||||||||||||||||||||    
T  19727973 atcacttttggtaatataatttcattttggcttgttcaaaaaa 19727931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 45458923 - 45458885
Alignment:
Q  83 acttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  45458923 acttttgttaatatatctcattttggcttgttaaaaaaa 45458885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 31430384 - 31430461
Alignment:
Q  42 tttgtgtgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaatata-tttcattttggcttgttcaaa 118  Q
    |||| ||||||||||| |||   || ||||||||||||||||||| |  |||| || |||||||||||||||||||||    
T  31430384 tttgggtgattctcttttgcataccgtgtgcgagatgaatcacttgtaataatctaatttcattttggcttgttcaaa 31430461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 9979268 - 9979307
Alignment:
Q  85 ttttgttaatatatttcattttggcttgttcaaaaaatata 125  Q
    ||||||||||||| |||||||||||||||| ||||||||||    
T  9979268 ttttgttaatataattcattttggcttgtt-aaaaaatata 9979307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 20574265 - 20574237
Alignment:
Q  93 atatatttcattttggcttgttcaaaaaa 121  Q
    |||||||||||||||||||||||||||||    
T  20574265 atatatttcattttggcttgttcaaaaaa 20574237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 37517282 - 37517357
Alignment:
Q  48 tgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaa--tatatttcattttggcttgttcaaaaaa 121  Q
    |||||||||| ||| |  |||||||||| ||||||||| ||||| |  ||||||||||||||| || |||||||||    
T  37517282 tgattctcttatgcacatcttgtgcgagttgaatcactcttgttgagttatatttcattttggtttcttcaaaaaa 37517357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 11002389 - 11002463
Alignment:
Q  47 gtgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaatat--atttcattttggcttgttcaaaa 119  Q
    ||||||||||| ||| |||||||||||||||||||||||  || ||||||  |||||||||||||||||| ||||    
T  11002389 gtgattctcttttgcacgccttgtgcgagatgaatcactagtggtaatatacatttcattttggcttgttaaaaa 11002463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 16238756 - 16238682
Alignment:
Q  47 gtgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    ||||||||||| ||| | |||||||||||||||||||||| || | ||| | |||||||||||||||| ||||||    
T  16238756 gtgattctcttttgcacaccttgtgcgagatgaatcacttctggttataaaattcattttggcttgttaaaaaaa 16238682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 22670074 - 22670000
Alignment:
Q  47 gtgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    ||||||||||| ||| | ||||||||||||| | |||||| || | ||| | |||||||||||||||||||||||    
T  22670074 gtgattctcttttgcacaccttgtgcgagattactcacttctggttataaaattcattttggcttgttcaaaaaa 22670000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 32244253 - 32244309
Alignment:
Q  80 atcacttttgttaatata-tttcattttggcttgttcaaaaaatatattatattatt 135  Q
    |||||||||| ||||||| ||| |||||||||||||||||||| ||||||| |||||    
T  32244253 atcacttttggtaatataattttattttggcttgttcaaaaaaaatattatcttatt 32244309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 96
Target Start/End: Complemental strand, 12111223 - 12111192
Alignment:
Q  65 ccttgtgcgagatgaatcacttttgttaatat 96  Q
    ||||||||||||||||||||||||||||||||    
T  12111223 ccttgtgcgagatgaatcacttttgttaatat 12111192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 121
Target Start/End: Original strand, 19177493 - 19177524
Alignment:
Q  90 ttaatatatttcattttggcttgttcaaaaaa 121  Q
    ||||||||||||||||||||||||||||||||    
T  19177493 ttaatatatttcattttggcttgttcaaaaaa 19177524  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 32417468 - 32417427
Alignment:
Q  88 tgttaatatatttcattttggcttgttcaaaaaatatattata 130  Q
    ||||||||||| |||||||||||||||||||||| ||||||||    
T  32417468 tgttaatatatctcattttggcttgttcaaaaaa-atattata 32417427  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 121
Target Start/End: Complemental strand, 44472859 - 44472826
Alignment:
Q  88 tgttaatatatttcattttggcttgttcaaaaaa 121  Q
    |||||||||| |||||||||||||||||||||||    
T  44472859 tgttaatataattcattttggcttgttcaaaaaa 44472826  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 14432806 - 14432770
Alignment:
Q  85 ttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    ||||||||||||||||||||||  |||||||||||||    
T  14432806 ttttgttaatatatttcattttaacttgttcaaaaaa 14432770  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 28252218 - 28252190
Alignment:
Q  93 atatatttcattttggcttgttcaaaaaa 121  Q
    |||||||||||||||||||||||||||||    
T  28252218 atatatttcattttggcttgttcaaaaaa 28252190  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 22197656 - 22197729
Alignment:
Q  47 gtgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaatatatttcattttggcttgttcaaaaa 120  Q
    ||||||||||| ||| | |||||||||||||||||||||| || | ||| | ||| ||||||||||||||||||    
T  22197656 gtgattctcttttgcacaccttgtgcgagatgaatcacttctggttataaaattctttttggcttgttcaaaaa 22197729  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 30898565 - 30898626
Alignment:
Q  63 cgccttgtgcgagatgaatcacttttgtt---aatatatttcattttggcttgttcaaaaaa 121  Q
    ||||||||||||| ||||||||| |||||   ||||||| |||||||| |||||||||||||    
T  30898565 cgccttgtgcgaggtgaatcactgttgtttgtaatatatctcattttgtcttgttcaaaaaa 30898626  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 19836625 - 19836587
Alignment:
Q  83 acttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  19836625 acttttgttaatatatctcattttggtttgttcaaaaaa 19836587  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 37113208 - 37113282
Alignment:
Q  47 gtgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    ||||||||||| ||| | |||||||||||||||||||||| || | ||  | | ||||||| |||||||||||||    
T  37113208 gtgattctcttttgcacaccttgtgcgagatgaatcacttctggttatgaaatccattttgacttgttcaaaaaa 37113282  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 41908685 - 41908647
Alignment:
Q  90 ttaatatatttcattttggcttgttcaaaaaatatatta 128  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  41908685 ttaatatattttattttggtttgttcaaaaaatatatta 41908647  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 14137174 - 14137138
Alignment:
Q  85 ttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  14137174 ttttgttaatatatttcattttggtttgctcaaaaaa 14137138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 45607501 - 45607465
Alignment:
Q  85 ttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  45607501 ttttgtttatatatctcattttggcttgttcaaaaaa 45607465  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 55339470 - 55339395
Alignment:
Q  47 gtgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaatat-atttcattttggcttgttcaaaaaa 121  Q
    ||||||||||| ||| | ||||||||||||||||| |||| || |||| | ||| |||||||||||||||||||||    
T  55339470 gtgattctcttttgcacaccttgtgcgagatgaattacttctggtaatttaattacattttggcttgttcaaaaaa 55339395  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 40969704 - 40969666
Alignment:
Q  83 acttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  40969704 acttttgttaatatatctcattttggcttgttcaaaaaa 40969666  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 31644416 - 31644381
Alignment:
Q  86 tttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    ||||||||||||| ||||||||||||||||||||||    
T  31644416 tttgttaatatatctcattttggcttgttcaaaaaa 31644381  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 20358052 - 20358134
Alignment:
Q  39 tggtttgtgtgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    ||||||| ||||||||||| ||| | |||| |  ||||||||||| ||||||||||||||| |||| | || |||| ||||||    
T  20358052 tggtttgggtgattctcttttgcacaccttatatgagatgaatcatttttgttaatatattccattctagcatgtttaaaaaa 20358134  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 37268884 - 37268965
Alignment:
Q  47 gtgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaatata--tttcattttggcttgttcaaaaaatatat 126  Q
    ||||||||| | ||| ||||||||||||||||||||||   || |||||||  ||||||||| |||||||| ||||| ||||    
T  37268884 gtgattctcctctgcacgccttgtgcgagatgaatcaccagtggtaatataagtttcatttttgcttgttccaaaaaaatat 37268965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 53050448 - 53050399
Alignment:
Q  83 acttttgttaatatatttcattttggcttgttcaaaaaatatattatatt 132  Q
    |||||||||||||||| ||||||||| ||||| |||||| || |||||||    
T  53050448 acttttgttaatatatctcattttggattgttaaaaaaaaatcttatatt 53050399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 9064604 - 9064530
Alignment:
Q  47 gtgattctcttgtgctcgccttgtgcgagatgaatcacttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    ||||||||||| ||| | | |||||||||||||||||||| || | ||  ||| |||||||||||||||||||||    
T  9064604 gtgattctcttttgcacactttgtgcgagatgaatcacttatggttattaattccattttggcttgttcaaaaaa 9064530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 121
Target Start/End: Complemental strand, 2680620 - 2680587
Alignment:
Q  88 tgttaatatatttcattttggcttgttcaaaaaa 121  Q
    ||||||||||||||||||||||||||| ||||||    
T  2680620 tgttaatatatttcattttggcttgttaaaaaaa 2680587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 27677962 - 27678022
Alignment:
Q  66 cttgtgcgagatgaatcacttttgttaat-----atatttcattttggcttgttcaaaaaa 121  Q
    ||||||||||||||||||| || ||||||     |||||||||||||||||||| ||||||    
T  27677962 cttgtgcgagatgaatcaccttcgttaatgttatatatttcattttggcttgttaaaaaaa 27678022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 22174755 - 22174719
Alignment:
Q  85 ttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    |||||||||||||| ||||||||||||||||||||||    
T  22174755 ttttgttaatatatctcattttggcttgttcaaaaaa 22174719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 121
Target Start/End: Complemental strand, 13383474 - 13383440
Alignment:
Q  87 ttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    |||||||||||| ||||||||||||||||||||||    
T  13383474 ttgttaatatatctcattttggcttgttcaaaaaa 13383440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 16237002 - 16237056
Alignment:
Q  67 ttgtgcgagatgaatcacttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    |||||||||||||||||||| || | ||  | |||||||||||||||||||||||    
T  16237002 ttgtgcgagatgaatcacttctgattatgaaattcattttggcttgttcaaaaaa 16237056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 48250018 - 48249973
Alignment:
Q  76 atgaatcacttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    |||||||| ||||||||| |||||| |||||| |||||||||||||    
T  48250018 atgaatcatttttgttaacatattttattttgacttgttcaaaaaa 48249973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 16428074 - 16428110
Alignment:
Q  85 ttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  16428074 ttttgttaatataattcattttcgcttgttcaaaaaa 16428110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 51169571 - 51169535
Alignment:
Q  85 ttttgttaatatatttcattttggcttgttcaaaaaa 121  Q
    |||||||||||||| |||||||| |||||||||||||    
T  51169571 ttttgttaatatatctcattttgacttgttcaaaaaa 51169535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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