View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6623_low_9 (Length: 468)
Name: NF6623_low_9
Description: NF6623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6623_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 11 - 448
Target Start/End: Complemental strand, 47989296 - 47988859
Alignment:
| Q |
11 |
cacagagaagagagtaccatttaacagcaaaggatggaaatttacatagccaaactatggtactaaatggaaacattctaagtggaaattcagctggtga |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47989296 |
cacaaagaagagagtaccatttaacagcaaaggatggaaatttacatagccaaactatggtactaaatggaaacattctaagtggaaattcagctggtga |
47989197 |
T |
|
| Q |
111 |
cattccttcattgaatcctatatatgttgattcttcaaagccaataacagttagacctctttctattgtatttgctcatataccagatgctgctgttaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47989196 |
cattccttcattgaatcctatatatgttgattcttcaaagccaataacagttaggcctctttctattgtatttgcacatataccagatgctgctgttaaa |
47989097 |
T |
|
| Q |
211 |
gcttgcagctagctagctcaatggcactaggaaaaaccgaaaatcggtttcccttggtgattgataagaaaattaaacacagtataatacaagaaaagta |
310 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47989096 |
gcttgcagctagctagctcaatggcactaggcaaaaccgaaaatcggtttcccttggtgattgataagaaaattaaacacagtataatacaagaaaagta |
47988997 |
T |
|
| Q |
311 |
ctagtgttagattgtttggagggcgaagccctaggattttgatttattttgcataatcccaatgcactattcagttcattatgataattgtaaatttcat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47988996 |
ctagtgttagattgtttggagggcgaagccctaggattttgatttattttgcataatcccaatgcactattcagttcattatgataattgtaaatttcat |
47988897 |
T |
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| Q |
411 |
tataaattgaaagtgacattcagtttcttgccttaggt |
448 |
Q |
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| T |
47988896 |
tataaattgaaagtgacattcagtttcttgccttaggt |
47988859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 26 - 432
Target Start/End: Complemental strand, 47978925 - 47978519
Alignment:
| Q |
26 |
accatttaacagcaaaggatggaaatttacatagccaaactatggtactaaatggaaacattctaagtggaaattcagctggtgacattccttcattgaa |
125 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||||||| ||| ||||||||||| |||||| || |||| |
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| T |
47978925 |
accatttaacagcaaaggatggagatttacatagccaaattatgttactaaatggaaacatcctaagtgtaaactcagctggtgatattcctccactgaa |
47978826 |
T |
|
| Q |
126 |
tcctatatatgttgattcttcaaagccaataacagttagacctctttctattgtatttgctcatataccagatgctgctgttaaagcttgcagctagcta |
225 |
Q |
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||||||||||||||| |||||||||||||||||| || ||||| ||||||||||||| ||| || | |||| ||||| ||| ||||||||||||| |
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| T |
47978825 |
tcctatatatgttgactcttcaaagccaataacacttgatcctctctctattgtatttgttcaaattcaagatactgctattaccatttgcagctagcta |
47978726 |
T |
|
| Q |
226 |
gctcaatggcactaggaaaaaccgaaaatcggtttcccttggtgattgataagaaaattaaacacagtataatacaagaaaagtactagtgttagattgt |
325 |
Q |
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| T |
47978725 |
gctcaatatcactaggtgaaaccaaaaataggtttctcttggtgattgataataaaataaaacatagaaatataaaggaaaaataccactgttagattgt |
47978626 |
T |
|
| Q |
326 |
ttggagggcgaagccctaggattttgatttattttgcataatcccaatgcactattcagttcattatgataattgtaaatttcattataaattgaaagtg |
425 |
Q |
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|||||||| ||| |||||||||||||| ||||||||| || ||||||||||||||||| ||||||| ||||||||||| |||||||||||||| || |
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| T |
47978625 |
ttggagggtcgagcactaggattttgattggttttgcatattctcaatgcactattcagtttattatgactattgtaaattttattataaattgaaaatg |
47978526 |
T |
|
| Q |
426 |
acattca |
432 |
Q |
| |
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||||||| |
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|
| T |
47978525 |
acattca |
47978519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 38356308 - 38356188
Alignment:
| Q |
11 |
cacagagaagagagtaccatttaacagcaaaggatggaaatttacatagccaaactatggtactaaatggaaacattctaagtggaaattcagctggtga |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | |||||||| |||||| |||||| ||| ||||||||||| |
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| T |
38356308 |
cacagagaagagagtaccatttaacagcaaaggatggaaatttacgttgccaaactatgctgctaaatggtaacattttaagtgtaaactcagctggtga |
38356209 |
T |
|
| Q |
111 |
cattccttcattgaatcctat |
131 |
Q |
| |
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|||||| |||||||||||| |
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| T |
38356208 |
tattcctctattgaatcctat |
38356188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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