View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6624_low_2 (Length: 339)
Name: NF6624_low_2
Description: NF6624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6624_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 34092826 - 34093167
Alignment:
| Q |
1 |
catgattaggacttttctcaatgagaaactttgccaaagtcagattgatattgaataattggctaaacaaatctcacattatatatacacaaccacttga |
100 |
Q |
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| T |
34092826 |
catgattaggacttttctcaataagaaactttgccaaagtcagattgatattgaataattggcaaaacaaatctcacattatatatacacaaccacttga |
34092925 |
T |
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| Q |
101 |
aataaaagaaacaattacattgtatgcaaatcattatcgttggctattagagcatatattaattcaaagatgaaaaagacattggtagctagaaaaatga |
200 |
Q |
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| T |
34092926 |
aataaaagaaacaattacattgtatgcaaatcattatcgttggctattagagcatatattaattcaaagatgaaaaagacattggtagctagaaaaatga |
34093025 |
T |
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| Q |
201 |
agaagaggcattaggttaggtatatgtgatgatgtccacctcatgacaaattagaagctgaaccaattatagattaggtaa---taggatttaaaaatga |
297 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34093026 |
agaagaggcattaggttaggtaaatgtgatgatgtccacctcatgacaaattagaagctgaaccaattatagattaggtaatagtaggatttaaaaatga |
34093125 |
T |
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| Q |
298 |
attaaattgtgtgtagtgaatactccaaaatcaaaactttgc |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
34093126 |
attaaattgtgtgtagtgaatactccaaaatcaaaactttgc |
34093167 |
T |
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