View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6625_high_11 (Length: 542)
Name: NF6625_high_11
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 25900108 - 25900419
Alignment:
| Q |
20 |
tcaagtgtatgaagagctttgttaatgtcttcttctaacgttgttacataaaatgaccaaacagacctacgccaaatatcgcagatgagttatctga--- |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||| |
|
|
| T |
25900108 |
tcaagtgtacgaagagctttgttaatgtcttct---aacgttgttacataaaatgaccaaacagacccacgccaaatatcgtacatgagttatctgatct |
25900204 |
T |
|
| Q |
117 |
--agtatgagcatacaaccgcaaacaaaccaactactcccgcacattgtaactggtctcacaccatatcaaaaagtcatgaccaaatagtgtagtttaca |
214 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25900205 |
gaagtatgagcatacaaacgcaaacaaaccaactactcccacacattgtaactggtctcacaccatatcaaaaagtcatgaccaaatagtgtagtt-aca |
25900303 |
T |
|
| Q |
215 |
tacatcatgtgaaatacaatacctcaaagagcagctcatctggtaagcaacggtgtaaaagagaagaatcaacatgaggctttctacttgcactaccaaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25900304 |
tacatcatgtgaaatacaatacctcaaagagcagctcatctggtaagcaacggtgtaaaagagaagaatcaacatgaggctttctacttgcactaccaaa |
25900403 |
T |
|
| Q |
315 |
tggcacaacaggtctc |
330 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
25900404 |
tggcgcaacaggtctc |
25900419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 163 - 330
Target Start/End: Complemental strand, 40067980 - 40067818
Alignment:
| Q |
163 |
taactggtctcacaccatatcaaaaagtcatgaccaaatagtgtagtttacatacatcatgtgaaatacaatacctcaaagagcagctcatctggtaagc |
262 |
Q |
| |
|
||||| || |||||| ||||||| ||||||||| |||||||||||| | |||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40067980 |
taactagtgtcacacaatatcaagaagtcatgatcaaatagtgtagctg-----catcatatgaaatgcaatacctcaaagagcagctcatctggtaagc |
40067886 |
T |
|
| Q |
263 |
aacggtgtaaaagagaagaatcaacatgaggctttctacttgcactaccaaatggcacaacaggtctc |
330 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||| |
|
|
| T |
40067885 |
aacgatgtaaaagagaagaatcaacatgaggctttctacttgcacttccaaaaggcgcgacaggtctc |
40067818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 40068075 - 40067992
Alignment:
| Q |
50 |
tcttctaacgttgttacataaaa-tgaccaaacagacctacgccaaatatcgcagatgagttatctgaagtatgagcatacaac |
132 |
Q |
| |
|
|||||||||| |||| ||||||| |||||||||||| | || ||||||||||| ||||||| ||||||||| || |||||||| |
|
|
| T |
40068075 |
tcttctaacgatgttgcataaaaatgaccaaacagatccacatcaaatatcgcatatgagttgtctgaagtaggaacatacaac |
40067992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 531
Target Start/End: Original strand, 6844011 - 6844043
Alignment:
| Q |
499 |
gctgaatagcttctaactaactcacaggttctg |
531 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
6844011 |
gctgaatagcttctaactcactcacaggttctg |
6844043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University