View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6625_high_18 (Length: 435)

Name: NF6625_high_18
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6625_high_18
NF6625_high_18
[»] chr4 (16 HSPs)
chr4 (1-323)||(3253973-3254292)
chr4 (52-165)||(28497486-28497600)
chr4 (65-159)||(35555831-35555927)
chr4 (59-165)||(54470203-54470311)
chr4 (90-147)||(47611741-47611799)
chr4 (386-419)||(3253871-3253904)
chr4 (77-157)||(29398822-29398903)
chr4 (63-165)||(17900476-17900580)
chr4 (84-155)||(42639224-42639296)
chr4 (84-165)||(51252665-51252747)
chr4 (103-159)||(31459032-31459089)
chr4 (77-165)||(41192832-41192921)
chr4 (103-159)||(55768724-55768781)
chr4 (103-159)||(55832980-55833037)
chr4 (77-148)||(42285897-42285969)
chr4 (103-154)||(49987435-49987487)
[»] chr1 (17 HSPs)
chr1 (46-165)||(2544595-2544716)
chr1 (52-192)||(35828721-35828863)
chr1 (91-165)||(27848016-27848091)
chr1 (76-165)||(43423715-43423805)
chr1 (52-158)||(36339974-36340082)
chr1 (76-159)||(48431602-48431686)
chr1 (45-123)||(10569231-10569310)
chr1 (76-190)||(19908235-19908350)
chr1 (84-165)||(1661426-1661508)
chr1 (112-165)||(52561843-52561897)
chr1 (84-164)||(8343062-8343143)
chr1 (92-196)||(9509283-9509388)
chr1 (91-159)||(32404737-32404806)
chr1 (91-158)||(5338727-5338795)
chr1 (92-159)||(15085936-15086004)
chr1 (52-158)||(40416374-40416482)
chr1 (272-308)||(52837067-52837103)
[»] chr2 (17 HSPs)
chr2 (52-165)||(43752118-43752233)
chr2 (91-148)||(9578914-9578972)
chr2 (59-159)||(23714439-23714541)
chr2 (59-159)||(24102111-24102213)
chr2 (52-123)||(3481180-3481252)
chr2 (110-165)||(18958903-18958959)
chr2 (92-159)||(45367837-45367905)
chr2 (85-159)||(8180782-8180857)
chr2 (44-165)||(12141540-12141663)
chr2 (85-159)||(25834683-25834758)
chr2 (59-125)||(42543272-42543339)
chr2 (136-192)||(11017285-11017339)
chr2 (103-159)||(19024182-19024239)
chr2 (102-165)||(6218963-6219027)
chr2 (93-196)||(9556582-9556685)
chr2 (92-159)||(11992320-11992388)
chr2 (102-165)||(41330125-41330189)
[»] chr6 (6 HSPs)
chr6 (52-165)||(14389339-14389453)
chr6 (93-165)||(9593919-9593992)
chr6 (91-159)||(608159-608228)
chr6 (91-191)||(33084028-33084129)
chr6 (92-159)||(5258360-5258428)
chr6 (56-153)||(24665818-24665918)
[»] chr5 (16 HSPs)
chr5 (53-165)||(79509-79623)
chr5 (81-165)||(33667212-33667297)
chr5 (92-169)||(31636132-31636210)
chr5 (80-196)||(6888958-6889075)
chr5 (110-165)||(14667759-14667815)
chr5 (111-159)||(27895-27944)
chr5 (76-196)||(6859346-6859467)
chr5 (84-192)||(14749276-14749385)
chr5 (63-149)||(42199298-42199386)
chr5 (125-191)||(37124539-37124603)
chr5 (45-165)||(2712940-2713062)
chr5 (91-159)||(28676597-28676666)
chr5 (92-159)||(14665716-14665784)
chr5 (104-159)||(15168794-15168850)
chr5 (92-159)||(16347590-16347658)
chr5 (92-159)||(38684969-38685037)
[»] chr3 (14 HSPs)
chr3 (102-192)||(54365199-54365287)
chr3 (60-165)||(36820140-36820247)
chr3 (88-165)||(50960841-50960919)
chr3 (102-165)||(26490311-26490375)
chr3 (52-157)||(42510187-42510292)
chr3 (106-165)||(44134056-44134116)
chr3 (102-169)||(27917562-27917630)
chr3 (92-159)||(49503766-49503834)
chr3 (78-192)||(39600879-39600994)
chr3 (102-164)||(54128375-54128438)
chr3 (77-164)||(2340911-2340999)
chr3 (93-148)||(21200561-21200617)
chr3 (63-165)||(34719254-34719358)
chr3 (92-159)||(47233808-47233876)
[»] chr8 (15 HSPs)
chr8 (52-159)||(36143367-36143476)
chr8 (110-190)||(45512725-45512808)
chr8 (84-192)||(44681243-44681352)
chr8 (44-158)||(43904828-43904947)
chr8 (60-192)||(44373745-44373879)
chr8 (102-159)||(18752098-18752155)
chr8 (111-196)||(33511325-33511407)
chr8 (102-165)||(41444548-41444612)
chr8 (110-192)||(13171879-13171962)
chr8 (93-147)||(41971991-41972046)
chr8 (102-159)||(45419239-45419297)
chr8 (52-196)||(10824335-10824477)
chr8 (76-191)||(32043560-32043676)
chr8 (93-148)||(35643814-35643870)
chr8 (55-122)||(39953438-39953506)
[»] chr7 (15 HSPs)
chr7 (59-165)||(48736077-48736185)
chr7 (63-165)||(36514389-36514493)
chr7 (79-159)||(36101964-36102045)
chr7 (102-165)||(7189448-7189512)
chr7 (76-159)||(42187472-42187556)
chr7 (102-159)||(26742118-26742176)
chr7 (102-159)||(40169651-40169709)
chr7 (104-165)||(47848670-47848732)
chr7 (79-124)||(16013326-16013371)
chr7 (56-158)||(12966025-12966129)
chr7 (102-165)||(27893770-27893834)
chr7 (102-165)||(38920790-38920854)
chr7 (92-159)||(43281676-43281744)
chr7 (92-159)||(45836692-45836760)
chr7 (113-148)||(47236238-47236274)
[»] scaffold0018 (1 HSPs)
scaffold0018 (91-165)||(44079-44154)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 3254292 - 3253973
Alignment:
Q  1 tagtttctcttaaaaaatttctagttcttcatctatcttgaagaatttgattatccttcatttgatctaccctcctactacataatccataggtcttcac 100  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3254292 tagtttctcttaaaatttttctagttcttcatctatcttgaagaatctgattatccttcatttgatctaccctcctactacataattcataggtcttcac 3254193  T
Q  101 actacatgtccaaaccacctaagttattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatcatatgatc 200  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  3254192 actatatgtccaaaccacctaagctattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatcat---atc 3254096  T
Q  201 tcatatattcttacgacaaaagaacctaacattctcgtctctgctacgctgattttatcttgtattggtttttcacctcccaacattttgtttcatacaa 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3254095 tcatacattcttacgacaaaagaacctaacattctcgtctctgctacgctgattttatcttgtattggtttttcatctcccaacattttgtttcatacaa 3253996  T
Q  301 catcgtcaattttccaaatgttc 323  Q
    ||||||| |||||||||||||||    
T  3253995 catcgtcgattttccaaatgttc 3253973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 28497600 - 28497486
Alignment:
Q  52 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagttattttccatcatcttttctactaaa 150  Q
    |||||| ||| |||||||| ||||| ||||||||||| | | |||||| | ||||||| ||||||||||||||   |||||||  |||||||||||||||    
T  28497600 tatcctccatctgatctactctccttactacataatctacaagtcttctctctacatgcccaaaccacctaagcctttttccacaatcttttctactaaa 28497501  T
Q  151 ggtgctaccacaact 165  Q
    ||||||||| |||||    
T  28497500 ggtgctaccccaact 28497486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 35555831 - 35555927
Alignment:
Q  65 atctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 159  Q
    |||||| |||||| ||||| |||||| |||||||| | ||| ||| ||||||||||||||| || |||| | |||||||||||||| ||||||||||    
T  35555831 atctactctcctaactacagaatccacaggtcttctctctaaatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctacc 35555927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 54470311 - 54470203
Alignment:
Q  59 catttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgct 156  Q
    |||||||| ||| ||||| ||||||||||  | | |||||| | ||||||| ||||||||| ||||| || |||||| |||||||||||||| |||||||    
T  54470311 catttgatttactctccttactacataatttacatgtcttctctctacatgcccaaaccacttaagtctagtttccaccatcttttctactataggtgct 54470212  T
Q  157 accacaact 165  Q
    ||| |||||    
T  54470211 accccaact 54470203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 47611799 - 47611741
Alignment:
Q  90 taggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctact 147  Q
    ||||||||| | ||||||| ||||||||||||||  |||||||||||||||||||||||    
T  47611799 taggtcttctctctacatgcccaaaccacctaagcctattttccatcatcttttctact 47611741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 3253904 - 3253871
Alignment:
Q  386 catagtcgttatctaatgacaatcacataataac 419  Q
    ||||||||||||||||||||||||||||||||||    
T  3253904 catagtcgttatctaatgacaatcacataataac 3253871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 29398903 - 29398822
Alignment:
Q  77 actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgcta 157  Q
    |||||| |||| |||||||||| | ||||||| ||||||||| ||||  ||||||||| |||||||||||| | ||||||||    
T  29398903 actacagaatctataggtcttctctctacatgcccaaaccacataagcatattttccaccatcttttctaccataggtgcta 29398822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 165
Target Start/End: Complemental strand, 17900580 - 17900476
Alignment:
Q  63 tgatctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacca 160  Q
    |||||||| |||||| |||||||||||| |||||||| | |||| || ||||||||| | ||| || |||| | | |||||||||||| ||||||||||     
T  17900580 tgatctactctcctatctacataatccacaggtcttctctctacgtgcccaaaccacatgagtctagtttctaccgtcttttctactataggtgctaccc 17900481  T
Q  161 caact 165  Q
    |||||    
T  17900480 caact 17900476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 42639224 - 42639296
Alignment:
Q  84 aatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgc 155  Q
    |||||||| |||||| | ||||||||||||||||||||||  |  |||||| |||||||||||||| ||||||    
T  42639224 aatccataagtcttctctctacatgtccaaaccacctaagcctggtttccaccatcttttctactataggtgc 42639296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 51252665 - 51252747
Alignment:
Q  84 aatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    |||||| | |||||| | ||||||| ||| ||||||||||  || |||||| |||||||||||||| |||||||||| |||||    
T  51252665 aatccacatgtcttctctctacatgcccataccacctaagcctagtttccaccatcttttctactagaggtgctaccccaact 51252747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 31459089 - 31459032
Alignment:
Q  103 tacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 159  Q
    |||||| ||||||||||||||  ||||||| | |||||||||||||| ||||||||||    
T  31459089 tacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacc 31459032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 41192921 - 41192832
Alignment:
Q  77 actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    |||||| |||| | |||||||| | |||||||  |||| ||||||||| || |||||| |||||||||||||  |||||||||| |||||    
T  41192921 actacagaatctacaggtcttctctctacatgcacaaatcacctaagtctagtttccaccatcttttctactgtaggtgctaccccaact 41192832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 55768724 - 55768781
Alignment:
Q  103 tacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 159  Q
    |||||||| |||||||||||   |||||||||| ||||||||||||| ||||||||||    
T  55768724 tacatgtctaaaccacctaaacctattttccatgatcttttctactataggtgctacc 55768781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 55832980 - 55833037
Alignment:
Q  103 tacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 159  Q
    |||||||| |||||||||||   |||||||||| ||||||||||||| ||||||||||    
T  55832980 tacatgtctaaaccacctaaacctattttccatgatcttttctactataggtgctacc 55833037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 42285897 - 42285969
Alignment:
Q  77 actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctacta 148  Q
    |||||| |||||| |||||||| |  |||||| ||||||||||||||| || |||| | ||||||||||||||    
T  42285897 actacagaatccacaggtcttctctatacatgcccaaaccacctaagtctagtttctaccatcttttctacta 42285969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 49987487 - 49987435
Alignment:
Q  103 tacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtg 154  Q
    |||||| ||||||||||||||  ||||||||| |||||||||||||| |||||    
T  49987487 tacatgaccaaaccacctaagcctattttccaccatcttttctactataggtg 49987435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 46 - 165
Target Start/End: Complemental strand, 2544716 - 2544595
Alignment:
Q  46 tttgattatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttc 143  Q
    ||||| |||||| ||| |||||||| ||||| |||| | |||| |||||||||| | ||||||||||||||||||||||| | ||||||| |||||||||    
T  2544716 tttgactatcctccatctgatctactctccttactatagaatctataggtcttctctctacatgtccaaaccacctaagtctgttttccaccatcttttc 2544617  T
Q  144 tactaaaggtgctaccacaact 165  Q
    ||||| |||||||||| |||||    
T  2544616 tactataggtgctaccccaact 2544595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 35828721 - 35828863
Alignment:
Q  52 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaa-gttattttccatcatcttttctactaa 149  Q
    |||||| ||| |||||| | ||||| ||||||||||| |||||||||| | ||||| |||||||||||||||   ||||||||| |||||||||||| |     
T  35828721 tatcctccatatgatcttctctccttactacataatctataggtcttctctctacacgtccaaaccacctaaccctattttccaccatcttttctaccat 35828820  T
Q  150 aggtgctaccacaactttcttattaatattttcatttctaatc 192  Q
    |||||||||   |||| |||   ||||||| ||||||||||||    
T  35828821 aggtgctactcaaactctctctctaatattgtcatttctaatc 35828863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 27848016 - 27848091
Alignment:
Q  91 aggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    |||||||| | || |||| |||||||||||||| |||||||| | |||||||||||| | ||||||||||||||||    
T  27848016 aggtcttctctctgcatgcccaaaccacctaagcttattttctaccatcttttctaccacaggtgctaccacaact 27848091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 43423805 - 43423715
Alignment:
Q  76 tactacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    |||||||||||| | | |||||| | ||||||| ||||||||||||||  || |||||| |||||||||||||| ||||| |||| |||||    
T  43423805 tactacataatctacaagtcttctctctacatggccaaaccacctaagcctagtttccaccatcttttctactataggtgttaccccaact 43423715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 36339974 - 36340082
Alignment:
Q  52 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacct-aagttattttccatcatcttttctactaa 149  Q
    |||||| ||| ||||| |||| ||| |||||| |||| |||||||||| | || |||||| ||||||||| ||  ||||||||| ||||||||||| ||     
T  36339974 tatcctccatctgatcaacccgccttactacaaaatctataggtcttctctctccatgtctaaaccacctaaacctattttccaccatcttttctaatat 36340073  T
Q  150 aggtgctac 158  Q
    |||||||||    
T  36340074 aggtgctac 36340082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 48431602 - 48431686
Alignment:
Q  76 tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||||| |||| | | |||||| | ||||||| ||||||||||||||  ||||||||| |||||||||||||| ||| ||||||    
T  48431602 tactacaaaatctacaagtcttctctctacatgcccaaaccacctaagcctattttccaccatcttttctactataggggctacc 48431686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 10569231 - 10569310
Alignment:
Q  45 atttgattatccttcatttgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaag 123  Q
    ||||||||| ||| ||| | ||||||||||| ||||||| |||| | |||||||| | ||||||| ||||||||||||||    
T  10569231 atttgattaccctccatctaatctaccctccgtactacagaatctacaggtcttctctctacatgcccaaaccacctaag 10569310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 19908235 - 19908350
Alignment:
Q  76 tactacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaactttcttatta 174  Q
    |||||||||||| | |||| ||| | ||||||| ||||| |||||||  ||  |||||  |||||||| ||||| |||||||||||||||| |||  |||    
T  19908235 tactacataatctacaggttttctctctacatgcccaaatcacctaaacttggtttcccccatcttttttactataggtgctaccacaactctctcttta 19908334  T
Q  175 atattttcatttctaa 190  Q
    || || ||||||||||    
T  19908335 attttgtcatttctaa 19908350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 1661508 - 1661426
Alignment:
Q  84 aatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    |||| |||||||||| | |||||||  ||||||| || ||  ||||||||| |||||||||||||| |||||||||| |||||    
T  1661508 aatctataggtcttctctctacatgctcaaaccatctgagcctattttccaccatcttttctactataggtgctaccccaact 1661426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 52561843 - 52561897
Alignment:
Q  112 aaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    ||||||||||||  ||||||| |||||| |||||||||||||||||||| |||||    
T  52561843 aaaccacctaagcctattttctatcatcatttctactaaaggtgctaccccaact 52561897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 8343062 - 8343143
Alignment:
Q  84 aatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaac 164  Q
    |||||| |||||||| | ||||||| |||  |||||||||  || |||||| |||||||||||||||||||| |||| ||||    
T  8343062 aatccacaggtcttctctctacatgcccagtccacctaagcctagtttccaccatcttttctactaaaggtgttaccccaac 8343143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 9509388 - 9509283
Alignment:
Q  92 ggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaa 190  Q
    ||||||| | ||||||| |||||| |||||||  ||||||  | |||||||||||||| |||||||||| ||||| |||   ||||  | ||||||||||    
T  9509388 ggtcttctctctacatgcccaaactacctaagcctattttttaccatcttttctactataggtgctaccccaactctctctctaatggtgtcatttctaa 9509289  T
Q  191 tcatat 196  Q
    ||||||    
T  9509288 tcatat 9509283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 32404737 - 32404806
Alignment:
Q  91 aggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 159  Q
    |||||||| | |||||| |||||||||||||||  ||||||||| |||||||| ||||| ||||| ||||    
T  32404737 aggtcttctctctacatatccaaaccacctaagcctattttccaccatcttttttactataggtgttacc 32404806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 5338795 - 5338727
Alignment:
Q  91 aggtcttcacactacatgtccaaaccacctaagtt-attttccatcatcttttctactaaaggtgctac 158  Q
    |||||||| | || |||| |||||||||||||| | | |||||| |||||||||||||| |||||||||    
T  5338795 aggtcttctctctgcatgcccaaaccacctaagctcagtttccaccatcttttctactataggtgctac 5338727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 15086004 - 15085936
Alignment:
Q  92 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  15086004 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 15085936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 40416482 - 40416374
Alignment:
Q  52 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaa 149  Q
    |||||| ||| |||||||| ||||| |||||| |||| | || ||||| | ||||||| | ||||||||||||  |  |||||| ||||||||||||||     
T  40416482 tatcctgcatctgatctactctccttactacaaaatctacagttcttctctctacatgcctaaaccacctaagcctcgtttccaccatcttttctactat 40416383  T
Q  150 aggtgctac 158  Q
    |||||||||    
T  40416382 aggtgctac 40416374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 52837103 - 52837067
Alignment:
Q  272 ttcacctcccaacattttgtttcatacaacatcgtca 308  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  52837103 ttcacctcccaacattctgtttcatacaacattgtca 52837067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 43752118 - 43752233
Alignment:
Q  52 tatccttcatttgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaa 149  Q
    |||||| ||| |||||||| |||| |||||||||||| |||||||||| | ||||||||||||| ||||||||  ||||||| | || |||||||||||     
T  43752118 tatcctccatctgatctactctccctactacataatctataggtcttctctctacatgtccaaatcacctaagcctattttctaccaccttttctactat 43752217  T
Q  150 aggtgctaccacaact 165  Q
    |||||||||| |||||    
T  43752218 aggtgctaccccaact 43752233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 9578914 - 9578972
Alignment:
Q  91 aggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctacta 148  Q
    |||||||| | ||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  9578914 aggtcttctctctacatgtccaaaccacctaagtctattttacatcatctttactacta 9578972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 23714439 - 23714541
Alignment:
Q  59 catttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgct 156  Q
    |||||||||||| ||||| ||||||||||||| | |||||| | ||||||| | |||| || ||||| || |||||| |||||||||||||| | |||||    
T  23714439 catttgatctactctccttactacataatccacaagtcttctctctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgct 23714538  T
Q  157 acc 159  Q
    |||    
T  23714539 acc 23714541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 24102111 - 24102213
Alignment:
Q  59 catttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgct 156  Q
    |||||||||||| ||||| ||||||||||||| | |||||| | ||||||| | |||| || ||||| || |||||| |||||||||||||| | |||||    
T  24102111 catttgatctactctccttactacataatccacaagtcttctctctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgct 24102210  T
Q  157 acc 159  Q
    |||    
T  24102211 acc 24102213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 3481252 - 3481180
Alignment:
Q  52 tatccttcatttgatctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaag 123  Q
    |||||| ||| |||||||| |||||  ||||| |||| |||||||||| | ||||||||||||||||||||||    
T  3481252 tatcctccatctgatctactctccttgctacagaatctataggtcttctctctacatgtccaaaccacctaag 3481180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 18958959 - 18958903
Alignment:
Q  110 ccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    ||||||||||||||  ||||||||| |||||||||||||| |||||||||| |||||    
T  18958959 ccaaaccacctaagcctattttccaccatcttttctactataggtgctaccccaact 18958903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 45367837 - 45367905
Alignment:
Q  92 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||||| | |||||||||||||||| ||||| |||||||| | || ||||||||||| ||||||||||    
T  45367837 ggtcttctctctacatgtccaaaccatctaaggttattttctaccaacttttctactataggtgctacc 45367905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 8180857 - 8180782
Alignment:
Q  85 atccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||| |||||||| | ||||||| |||||||| ||||| |||||||| | || ||||||||||| ||||||||||    
T  8180857 atccacaggtcttctctctacatgcccaaaccatctaagcttattttctaccaacttttctactataggtgctacc 8180782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 12141663 - 12141540
Alignment:
Q  44 aatttgattatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttt 141  Q
    ||||||| ||||||  || |||||||| ||||| |||| | |||| | ||||||||   |||| || ||||||||||||||  | ||||||| |||||||    
T  12141663 aatttgactatcctcaatctgatctactctccttactagagaatctacaggtcttctttctacgtgcccaaaccacctaagcctcttttccaccatcttt 12141564  T
Q  142 tctactaaaggtgctaccacaact 165  Q
    ||||||| |||||||||| |||||    
T  12141563 tctactataggtgctaccccaact 12141540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 25834758 - 25834683
Alignment:
Q  85 atccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||| |||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  25834758 atccacaggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 25834683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 42543339 - 42543272
Alignment:
Q  59 catttgatctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaagtt 125  Q
    |||||||||||| |||||| ||||| |||||| |||||||| |  |||||| ||||||||||||||||    
T  42543339 catttgatctactctcctaactacagaatccacaggtcttctctgtacatgcccaaaccacctaagtt 42543272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 11017339 - 11017285
Alignment:
Q  136 atcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatc 192  Q
    ||||||||||||| |||||||||| ||||| |||  |||||||||||||| ||||||    
T  11017339 atcttttctactataggtgctacctcaactctct--ttaatattttcattcctaatc 11017285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 19024239 - 19024182
Alignment:
Q  103 tacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||||||||||||||||||| ||| |||||| ||||||||| | || ||||||||||    
T  19024239 tacatgtccaaaccacctaagcttactttccaccatcttttcaaatataggtgctacc 19024182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 6219027 - 6218963
Alignment:
Q  102 ctacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    ||||||||||||||||||||||  |||| ||||  ||||||||||||| | |||||||| |||||    
T  6219027 ctacatgtccaaaccacctaagcctattatccactatcttttctactataagtgctaccccaact 6218963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 9556582 - 9556685
Alignment:
Q  93 gtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaat 191  Q
    |||||| | ||||||| | ||||||||||||  ||||||||| ||| |||||||||| | ||| |||| |||||||||   |||| || |||||||||||    
T  9556582 gtcttctctctacatgcctaaaccacctaagcctattttccaccat-ttttctactataagtgttaccccaactttctctctaatgttgtcatttctaat 9556680  T
Q  192 catat 196  Q
    |||||    
T  9556681 catat 9556685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 11992320 - 11992388
Alignment:
Q  92 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||||| | ||| |||||||||||| ||||| |||||||| | || ||||||||||| ||||||||||    
T  11992320 ggtcttctctctatatgtccaaaccatctaagcttattttctaccaacttttctactataggtgctacc 11992388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 41330189 - 41330125
Alignment:
Q  102 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    |||||||| ||||||| |||||  ||||||  |||||||||||||||||||||| |||| |||||    
T  41330189 ctacatgttcaaaccatctaagcctatttttgatcatcttttctactaaaggtgttacctcaact 41330125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 14389339 - 14389453
Alignment:
Q  52 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagttattttccatcatcttttctactaaa 150  Q
    |||||| ||| |||||||  ||||| |||||| | || |||||||||| | ||||||||||||||||||||||||  |||||| |||||||||||| | |    
T  14389339 tatcctccatctgatctattctccttactacaaagtctataggtcttctctctacatgtccaaaccacctaagtttgtttccaccatcttttctacgata 14389438  T
Q  151 ggtgctaccacaact 165  Q
    ||||||||| |||||    
T  14389439 ggtgctacctcaact 14389453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 9593919 - 9593992
Alignment:
Q  93 gtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    |||||| | ||||||| ||||||||||||||  ||||||| | ||||||||||||||| ||||||||| |||||    
T  9593919 gtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactaatggtgctaccccaact 9593992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 608228 - 608159
Alignment:
Q  91 aggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 159  Q
    |||||||| | |||||||||||||||| |||||  ||||||| |||| ||||||||||| ||||| ||||    
T  608228 aggtcttctctctacatgtccaaaccatctaagcctattttctatcaacttttctactataggtgatacc 608159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 33084129 - 33084028
Alignment:
Q  91 aggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttcta 189  Q
    |||||||| | ||||||  ||||||||||||||| || |||| | |||||||||||| | |||||||||| ||||| |||   ||||||  |||||||||    
T  33084129 aggtcttctctctacattcccaaaccacctaagtctagtttctaccatcttttctaccataggtgctaccccaactctctctctaatatcgtcatttcta 33084030  T
Q  190 at 191  Q
    ||    
T  33084029 at 33084028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 5258360 - 5258428
Alignment:
Q  92 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  5258360 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 5258428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 24665918 - 24665818
Alignment:
Q  56 cttcatttgatctaccctcct-actacataa-tccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaagg 152  Q
    |||||| |||||||| ||||| |||||| || || | |||||||| | ||||||||||||||||||||||  ||||||| | ||| |||||||||| |||    
T  24665918 cttcatctgatctactctccttactacaaaaatctacaggtcttctctctacatgtccaaaccacctaagcctattttctaccatattttctactatagg 24665819  T
Q  153 t 153  Q
    |    
T  24665818 t 24665818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 79623 - 79509
Alignment:
Q  53 atccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaa 150  Q
    ||||| ||||||||| || ||||| |||||| |||| |||||||||| | ||||||||||||||||||||| | | ||||||| |||||||||||||| |    
T  79623 atcctccatttgatcgactctccttactacagaatctataggtcttctctctacatgtccaaaccacctaattatgttttccaccatcttttctactata 79524  T
Q  151 ggtgctaccacaact 165  Q
    ||| ||||| |||||    
T  79523 ggtactaccccaact 79509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 165
Target Start/End: Complemental strand, 33667297 - 33667212
Alignment:
Q  81 cataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    ||||||||| |||||||| | ||||||| ||||||||||||||| || |||| | |||||||||||||| |||||||||| |||||    
T  33667297 cataatccacaggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaact 33667212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 31636132 - 31636210
Alignment:
Q  92 ggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttct 169  Q
    ||||||| | ||||||| ||||||||||||||| || |||| | |||||||||||||| |||||||||| |||||||||    
T  31636132 ggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactttct 31636210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 196
Target Start/End: Complemental strand, 6889075 - 6888958
Alignment:
Q  80 acataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaactttcttattaatat 178  Q
    |||||||||| | |||||| | ||||||||||||||||| ||||  ||||||||| |||||||||  ||| | |||||||| ||||| | |   ||||||    
T  6889075 acataatccacaagtcttctctctacatgtccaaaccacttaagcctattttccaccatcttttcctctatacgtgctaccccaactctttctgtaatat 6888976  T
Q  179 tttcatttctaatcatat 196  Q
    | ||||||||||||||||    
T  6888975 tgtcatttctaatcatat 6888958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 14667815 - 14667759
Alignment:
Q  110 ccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    ||||||||||||||| ||||||||| |||||||||||||| |||||||||| |||||    
T  14667815 ccaaaccacctaagtctattttccaccatcttttctactataggtgctaccccaact 14667759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 27944 - 27895
Alignment:
Q  111 caaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 159  Q
    |||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  27944 caaaccacctaagcctattttccatcatcttttctactataggtgctacc 27895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 6859467 - 6859346
Alignment:
Q  76 tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttatta 174  Q
    ||||||| |||||| | |||||| | |||| ||||||||||||||| |  | ||||||| |||||| |  |||| |||||||||| ||||| |||   ||    
T  6859467 tactacagaatccacaagtcttctctctacgtgtccaaaccacctatgcctgttttccaccatcttcttcactataggtgctaccccaactctctgtcta 6859368  T
Q  175 atattttcatttctaatcatat 196  Q
    ||||| ||||||||||||||||    
T  6859367 atattgtcatttctaatcatat 6859346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 192
Target Start/End: Complemental strand, 14749385 - 14749276
Alignment:
Q  84 aatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttc 182  Q
    |||||| |||||||| | |||||||||||||||| |||||| || |||| | ||  |||||||||| |||||||||  ||||| |||   |||| |||||    
T  14749385 aatccacaggtcttctctctacatgtccaaaccatctaagtctagtttctaccaatttttctactataggtgctacaccaactctctctctaatgttttc 14749286  T
Q  183 atttctaatc 192  Q
    ||||||||||    
T  14749285 atttctaatc 14749276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 42199386 - 42199298
Alignment:
Q  63 tgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaa 149  Q
    |||||||| ||||| |||||| |||| | | |||||| | ||||||| ||||||||||||||| || |||||| |||||||||||||||    
T  42199386 tgatctactctccttactacagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttctactaa 42199298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 37124603 - 37124539
Alignment:
Q  125 tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaat 191  Q
    ||||||||||||||||||| |||| |||||||||| | ||| |||  ||||| ||||||||||||||    
T  37124603 tattttccatcatcttttcaactataggtgctaccccgactctct--ttaattttttcatttctaat 37124539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 165
Target Start/End: Complemental strand, 2713062 - 2712940
Alignment:
Q  45 atttgattatccttcatttgatctaccctcctac-tacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatctttt 142  Q
    |||||| | |||| ||| |||||||| ||||| | |||| |||||| |||||||| | ||||||| ||||||||||||||| || | || | ||||||||    
T  2713062 atttgactctcctccatctgatctactctccttcatacagaatccacaggtcttctctctacatgcccaaaccacctaagtctagtctctaccatctttt 2712963  T
Q  143 ctactaaaggtgctaccacaact 165  Q
      |||| |||||||||| |||||    
T  2712962 agactataggtgctaccccaact 2712940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 28676666 - 28676597
Alignment:
Q  91 aggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 159  Q
    |||||||| | ||||||| | ||||||||||||  ||||||||| |||||||||||||| || |||||||    
T  28676666 aggtcttctctctacatgccgaaaccacctaagactattttccaccatcttttctactatagctgctacc 28676597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 14665784 - 14665716
Alignment:
Q  92 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||||| | |||||||||||||||| |||||  ||||||| |||| ||| ||||||| ||||||||||    
T  14665784 ggtcttctctctacatgtccaaaccatctaagcctattttctatcaacttctctactataggtgctacc 14665716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 15168850 - 15168794
Alignment:
Q  104 acatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||||||||||||||| ||  ||||||| | |||||||||||||| ||||||||||    
T  15168850 acatgtccaaaccaccttagcctattttctaccatcttttctactataggtgctacc 15168794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 16347590 - 16347658
Alignment:
Q  92 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  16347590 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 16347658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 38685037 - 38684969
Alignment:
Q  92 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  38685037 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 38684969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 54365199 - 54365287
Alignment:
Q  102 ctacatgtccaaaccacctaagttattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatc 192  Q
    ||||||| |||||||||||||| ||||||||  ||| |||||||||| |||||||||| ||||| |||   ||||||||||||||||||||    
T  54365199 ctacatgcccaaaccacctaagctattttccgccatattttctactataggtgctaccccaactctct--ctaatattttcatttctaatc 54365287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 36820140 - 36820247
Alignment:
Q  60 atttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgcta 157  Q
    ||||||||||||||||| ||||||||||| || ||||||| |  |||||||| ||||||||||||  || |||||| ||||||| ||| || ||||||||    
T  36820140 atttgatctaccctccttactacataatctatgggtcttctctttacatgtctaaaccacctaagcctagtttccaccatctttgctaatataggtgcta 36820239  T
Q  158 ccacaact 165  Q
    || |||||    
T  36820240 ccccaact 36820247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 50960841 - 50960919
Alignment:
Q  88 cataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    ||||||||||| | ||||||| ||||||||||||||  ||||||| | |||||||||||||| |||||||||| |||||    
T  50960841 cataggtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctaccccaact 50960919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 26490375 - 26490311
Alignment:
Q  102 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    ||||||||||||||||||||||  ||||||| | |||||||||||||| |||||||||| |||||    
T  26490375 ctacatgtccaaaccacctaagcctattttctaccatcttttctactataggtgctacctcaact 26490311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 42510187 - 42510292
Alignment:
Q  52 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaa 149  Q
    |||||| ||| |||||||| ||||| || ||| |||| |||||||||| |  |||||||||||||||||||||  |||||||||  |||||||||||||     
T  42510187 tatcctccatctgatctactctccttaccacaaaatctataggtcttctc--tacatgtccaaaccacctaagcctattttccactatcttttctactat 42510284  T
Q  150 aggtgcta 157  Q
    ||||||||    
T  42510285 aggtgcta 42510292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 44134056 - 44134116
Alignment:
Q  106 atgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||| |||||| |||||    
T  44134056 atgtccaaaccacctaagtctattttccaccatcttttctactagaggcgctaccccaact 44134116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 27917630 - 27917562
Alignment:
Q  102 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttct 169  Q
    |||||||||||||||| |||||  ||||| | | |||||||||||||| |||||||||| |||||||||    
T  27917630 ctacatgtccaaaccatctaagcctatttcctaccatcttttctactataggtgctaccccaactttct 27917562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 49503766 - 49503834
Alignment:
Q  92 ggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||||| | ||||||| ||||||||||||||  ||||||| | |||||||||||||| ||||||||||    
T  49503766 ggtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacc 49503834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 39600879 - 39600994
Alignment:
Q  78 ctacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaactttcttattaat 176  Q
    ||||| |||| | |||||||| |  |||||| | |||||||||||| || ||||||| |||||||||||||| |||| ||||| ||||| |||   ||||    
T  39600879 ctacagaatctacaggtcttctctttacatgccaaaaccacctaagcttgttttccaccatcttttctactataggtactaccccaactctctctctaat 39600978  T
Q  177 attttcatttctaatc 192  Q
     || ||||||||||||    
T  39600979 gttgtcatttctaatc 39600994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 54128438 - 54128375
Alignment:
Q  102 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaac 164  Q
    ||||||| ||||||||||||||  ||||||| | |||||||||||||| |||||||||| ||||    
T  54128438 ctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctaccccaac 54128375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 2340911 - 2340999
Alignment:
Q  77 actacataatccataggtcttcacactacatgtccaaaccacctaagtt-attttccatcatcttttctactaaaggtgctaccacaac 164  Q
    ||||||||||| |||| ||||  | |||||||  |||||||| |||| | |||||||| |||||||||||| || ||||||||| ||||    
T  2340911 actacataatctatagatcttttctctacatgctcaaaccacgtaagatgattttccaccatcttttctacgaatggtgctaccccaac 2340999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 21200617 - 21200561
Alignment:
Q  93 gtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctacta 148  Q
    |||||| | ||||||| ||||||||||||||| || |||||| ||||||||||||||    
T  21200617 gtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttctacta 21200561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 34719254 - 34719358
Alignment:
Q  63 tgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagtt-attttccatcatcttttctactaaaggtgctacca 160  Q
    |||||||| ||||| |||||| |||| | ||| |||| | ||| |||| |||| |||||||||| | |||||| |||||||||||| | ||||||||||     
T  34719254 tgatctactctccttactacaaaatcaacaggccttctctctatatgttcaaaacacctaagttgactttccaccatcttttctacgataggtgctaccc 34719353  T
Q  161 caact 165  Q
    |||||    
T  34719354 caact 34719358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 47233808 - 47233876
Alignment:
Q  92 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  47233808 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 47233876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 36143476 - 36143367
Alignment:
Q  52 tatccttcatttgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaa 149  Q
    |||||| |||||||||||| |||| ||||||| |||| |||||||||  | ||| ||| ||||||||||||||| ||||||||| ||||| |||| |||     
T  36143476 tatcctccatttgatctactctccatactacagaatctataggtcttttctctaaatgcccaaaccacctaagtctattttccaccatctattctgctat 36143377  T
Q  150 aggtgctacc 159  Q
    ||||||||||    
T  36143376 aggtgctacc 36143367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 45512725 - 45512808
Alignment:
Q  110 ccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact--ttcttattaatattttcatttctaa 190  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||||||||| |||||   |||  |||||||||||||||||||    
T  45512725 ccaaaccatctaagcttattttccatcatcttttctactataggtgctaccccaactccctctctttaatattttcatttctaa 45512808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 44681243 - 44681352
Alignment:
Q  84 aatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttc 182  Q
    |||| |||||||||| | ||| || ||||||||  ||||| |||||||||| ||||||||||| || |||||||||||||||| |||   |||| || ||    
T  44681243 aatctataggtcttctctctagatttccaaaccttctaagcttattttccaccatcttttctattataggtgctaccacaactgtctctctaatgttgtc 44681342  T
Q  183 atttctaatc 192  Q
    ||||||||||    
T  44681343 atttctaatc 44681352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 43904828 - 43904947
Alignment:
Q  44 aatttgattatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaag----ttattttccatcatc 138  Q
    ||||||| |||||| ||| |||||||  || || ||||||  ||| |||||||||| | ||||||||||||||||||||||    |||||||||  ||||    
T  43904828 aatttgactatcctccatctgatctattcttcttactacaacatctataggtcttctctctacatgtccaaaccacctaagcttattattttcctccatc 43904927  T
Q  139 ttttctactaaaggtgctac 158  Q
    |||||||||| || ||||||    
T  43904928 ttttctactatagatgctac 43904947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 44373879 - 44373745
Alignment:
Q  60 atttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgcta 157  Q
    ||||||||||| ||| | |||||| |||| ||||||||| || |||||||  ||||||||  |||  ||||||||| |||||||||||||  ||||||||    
T  44373879 atttgatctactctctttactacaaaatctataggtctttactctacatgctcaaaccactcaagcctattttccaccatcttttctactttaggtgcta 44373780  T
Q  158 ccacaactttcttattaatattttcatttctaatc 192  Q
    |  ||||| ||    ||||||||||||||||||||    
T  44373779 ctccaactctcactctaatattttcatttctaatc 44373745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 18752098 - 18752155
Alignment:
Q  102 ctacatgtccaaaccacctaagttattttccatcatcttttctactaaaggtgctacc 159  Q
    |||||||||||||||| ||||| ||||||| | || ||||||||||| ||||||||||    
T  18752098 ctacatgtccaaaccatctaagctattttctaccaacttttctactataggtgctacc 18752155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 33511407 - 33511325
Alignment:
Q  111 caaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatcatat 196  Q
    |||||||||||||| |||||| |||||| |||||||| | ||||| |||| ||||| |||    |||||||||||||||||||||||    
T  33511407 caaaccacctaagtctatttttcatcattttttctaccataggtgttaccccaactctct----aatattttcatttctaatcatat 33511325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 41444548 - 41444612
Alignment:
Q  102 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    |||||||||||||||||||||   || |||||| |||||||||||||| |||||||||| |||||    
T  41444548 ctacatgtccaaaccacctaaacctagtttccaccatcttttctactataggtgctaccccaact 41444612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 13171879 - 13171962
Alignment:
Q  110 ccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatc 192  Q
    ||||||||||||||  ||||||||| |||||||||||||| ||||||| || ||||| |||   |||| || ||||||||||||    
T  13171879 ccaaaccacctaagcatattttccaccatcttttctactataggtgcttccccaactctctctctaatcttgtcatttctaatc 13171962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 41971991 - 41972046
Alignment:
Q  93 gtcttcacactacatgtccaaaccacct-aagttattttccatcatcttttctact 147  Q
    |||||| | ||||||||||||||||||| || |||||||||| |||||||||||||    
T  41971991 gtcttctctctacatgtccaaaccacctaaacttattttccaccatcttttctact 41972046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 45419297 - 45419239
Alignment:
Q  102 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||||| ||||||||||||||| ||||||  | |||||||||||||| ||||||||||    
T  45419297 ctacatgcccaaaccacctaagtctattttataccatcttttctactataggtgctacc 45419239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 196
Target Start/End: Original strand, 10824335 - 10824477
Alignment:
Q  52 tatccttcatttgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaa 149  Q
    |||||| |||||||||||| |||| ||||||| |||| ||  |||||  | ||| ||  ||||||||||||||  ||||||| | |||||||||||||      
T  10824335 tatcctccatttgatctactctccatactacaaaatctatgagtcttttctctaaatacccaaaccacctaagcctattttcgaccatcttttctacttt 10824434  T
Q  150 aggtgctaccacaactttcttattaatattttcatttctaatcatat 196  Q
    ||||||| || ||||| |||    |||||||| ||||||||||||||    
T  10824435 aggtgctgcctcaactctct----aatatttttatttctaatcatat 10824477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 32043676 - 32043560
Alignment:
Q  76 tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttatta 174  Q
    |||||||  ||||| |||||||| | ||||||| |||||||||| |||| || |||| | |||||||| ||||| ||||| |||| ||||| |||   ||    
T  32043676 tactacaacatccacaggtcttctctctacatggccaaaccaccaaagtctagtttctaccatcttttgtactataggtgataccccaactctctctcta 32043577  T
Q  175 atattttcatttctaat 191  Q
    || || |||||||||||    
T  32043576 atgttgtcatttctaat 32043560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 35643814 - 35643870
Alignment:
Q  93 gtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctacta 148  Q
    |||||| | ||||||| ||||||||||||||  ||||||||| ||||||||||||||    
T  35643814 gtcttctctctacatgcccaaaccacctaagcatattttccaccatcttttctacta 35643870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 39953438 - 39953506
Alignment:
Q  55 ccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaa 122  Q
    ||||||| |||||||| ||||| |||||||||||||||||||  | | ||||||| | |||||||||||    
T  39953438 ccttcatctgatctactctccttactacataatccataggtcacctctctacatgcctaaaccacctaa 39953506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 165
Target Start/End: Original strand, 48736077 - 48736185
Alignment:
Q  59 catttgatctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgct 156  Q
    |||||||||||| |||||| |||||||||||| |||||||| | |||||||  |||||||||||||| || ||||   |||||||||||||  |||||||    
T  48736077 catttgatctactctcctaactacataatccacaggtcttcgctctacatgagcaaaccacctaagtctagtttctcccatcttttctactgtaggtgct 48736176  T
Q  157 accacaact 165  Q
    ||| |||||    
T  48736177 accccaact 48736185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 36514389 - 36514493
Alignment:
Q  63 tgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacca 160  Q
    |||||||| |||| ||||||| |||||| | ||| || | ||||||| ||||||||||||||| || |||| | |||||||||||||| ||||||||||     
T  36514389 tgatctactctccatactacagaatccacaagtcgtctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccc 36514488  T
Q  161 caact 165  Q
    |||||    
T  36514489 caact 36514493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 36101964 - 36102045
Alignment:
Q  79 tacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 159  Q
    |||| |||| |||||||||| | ||||||  ||||||||||||||  ||||||||| ||||||||||| || ||||||||||    
T  36101964 tacaaaatctataggtcttctctctacatccccaaaccacctaagcctattttccaacatcttttctattataggtgctacc 36102045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 7189448 - 7189512
Alignment:
Q  102 ctacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    ||||||| |||||||||||||| |||||||| | |||||||||||||| |||||| ||| |||||    
T  7189448 ctacatgcccaaaccacctaagcttattttctaccatcttttctactataggtgcgaccccaact 7189512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 42187556 - 42187472
Alignment:
Q  76 tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 159  Q
    |||||||||||| | ||| |||| |  |||||| ||||||||||||||  ||||||||| ||||||||||| || ||||||||||    
T  42187556 tactacataatctacaggccttctctttacatgcccaaaccacctaagcctattttccaccatcttttctattataggtgctacc 42187472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 26742118 - 26742176
Alignment:
Q  102 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 159  Q
    |||||||| ||||||||||||   ||||||||| |||||||||||||| ||||||||||    
T  26742118 ctacatgttcaaaccacctaatcctattttccaccatcttttctactataggtgctacc 26742176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 40169709 - 40169651
Alignment:
Q  102 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||||| ||||||||||||||  ||||||||| |||||||||||||| | ||||||||    
T  40169709 ctacatgcccaaaccacctaagcctattttccaccatcttttctactataagtgctacc 40169651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 47848732 - 47848670
Alignment:
Q  104 acatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    ||||| ||||||||||||||  ||||||||| |||||||||||||| ||| |||||| |||||    
T  47848732 acatgcccaaaccacctaagcctattttccaccatcttttctactataggcgctaccccaact 47848670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 16013371 - 16013326
Alignment:
Q  79 tacataatccataggtcttcacactacatgtccaaaccacctaagt 124  Q
    ||||||||||| |||||||| ||||||||| ||||| |||||||||    
T  16013371 tacataatccacaggtcttctcactacatgcccaaatcacctaagt 16013326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 12966129 - 12966025
Alignment:
Q  56 cttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggt 153  Q
    ||||| ||||||||| ||||| |||||| |||  |  ||||||| | ||||||| ||||||||||||||  || |||||| |||||||||| ||| ||||    
T  12966129 cttcacttgatctactctccttactacagaatttacgggtcttctctctacatgcccaaaccacctaagcatagtttccaccatcttttcttctataggt 12966030  T
Q  154 gctac 158  Q
    |||||    
T  12966029 gctac 12966025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 27893770 - 27893834
Alignment:
Q  102 ctacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    |||||||| |||||||||||||  ||||||||| ||||| |||||||| ||||| |||| |||||    
T  27893770 ctacatgttcaaaccacctaagcctattttccaccatctattctactataggtgttacctcaact 27893834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 38920854 - 38920790
Alignment:
Q  102 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    ||||||| ||||||||| ||||  || |||||| |||||||||||||| |||||||||| |||||    
T  38920854 ctacatgcccaaaccacttaagcctagtttccaccatcttttctactataggtgctaccccaact 38920790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 43281744 - 43281676
Alignment:
Q  92 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  43281744 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 43281676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 45836692 - 45836760
Alignment:
Q  92 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 159  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  45836692 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 45836760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 47236274 - 47236238
Alignment:
Q  113 aaccacctaagt-tattttccatcatcttttctacta 148  Q
    |||||||||||| ||||||||||||||||||||||||    
T  47236274 aaccacctaagtctattttccatcatcttttctacta 47236238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 44079 - 44154
Alignment:
Q  91 aggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 165  Q
    |||||||| | ||||||| ||||||||||||||  ||||||||  |||||||||||||| |||||||||| |||||    
T  44079 aggtcttctctctacatgcccaaaccacctaagcctattttccgccatcttttctactataggtgctaccccaact 44154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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