View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_high_23 (Length: 399)
Name: NF6625_high_23
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 214 - 397
Target Start/End: Original strand, 49255932 - 49256115
Alignment:
| Q |
214 |
atcatttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccatatggta |
313 |
Q |
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| T |
49255932 |
atcatttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccatatggta |
49256031 |
T |
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| Q |
314 |
taactttccctagtgtttagttttacgcatagatgactttgcgtgtatgaaagttgtattgtaatggttacttatagtcaaata |
397 |
Q |
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| T |
49256032 |
taactttccctagtgtttagttttacgcatagatgactttgcgtgtatgaaagttgtattgtaatggttacttatagtcaaata |
49256115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 49274701 - 49274577
Alignment:
| Q |
87 |
ttatttcaatgatgatggttggtcatttgtgtaaactttctctttctagcacagctattgct----atctctctttgtgctgtctctggcttcagccgtt |
182 |
Q |
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| T |
49274701 |
ttatttcaatgatgatggttggtcatttgggtaaactttctctttctagcacagctattgcttgctatctctctttgtgctgtctctggcttcagccgtt |
49274602 |
T |
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| Q |
183 |
cagcgttcttgcaagtcttcttttg |
207 |
Q |
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| T |
49274601 |
cagcgttcttgcaagtcttcttttg |
49274577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 49254875 - 49254965
Alignment:
| Q |
87 |
ttatttcaatgatgatggttggtcatttgtgtaaactttctctttctagcacagctattgctatctctctttgtgctgtctctggcttcag |
177 |
Q |
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| T |
49254875 |
ttatttcaatgatgatggttggtcatttgggtaaactttctctttctagcacagctattgctatctctctctgtgttgtctctggcttcag |
49254965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 218 - 316
Target Start/End: Original strand, 49268906 - 49269004
Alignment:
| Q |
218 |
tttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccatatggtataa |
316 |
Q |
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| T |
49268906 |
tttcagccttgagtggtggtcatttgaactcctaatccttctttctggtcttctaccaaatccacagcttgaaacttcagtcttatccatatggtataa |
49269004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 49267137 - 49267227
Alignment:
| Q |
87 |
ttatttcaatgatgatggttggtcatttgtgtaaactttctctttctagcacagctattgctatctctctttgtgctgtctctggcttcag |
177 |
Q |
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| T |
49267137 |
ttatttcaatgataatggttggtcgtttgggtaaacttgctctttctagcacagctattgctatctctctctgtggtgtctctggcttcag |
49267227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 49271543 - 49271633
Alignment:
| Q |
87 |
ttatttcaatgatgatggttggtcatttgtgtaaactttctctttctagcacagctattgctatctctctttgtgctgtctctggcttcag |
177 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| | || ||||||||||||||| |
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| T |
49271543 |
ttatttcaatgatgatggttggtcatttgggtaaacttgctctttctaccacagctattgctatctctctctatggtgtctctggcttcag |
49271633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 49273704 - 49273738
Alignment:
| Q |
217 |
atttcagctttgagtggtggtcatttgagctccta |
251 |
Q |
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| T |
49273704 |
atttcagctttgagtggtggtcatttgagctccta |
49273738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 6285955 - 6285881
Alignment:
| Q |
21 |
ttaatcttatgttttagcaaataaataacgttattagtggattctttgagtctcaatttgccgccgttatttcaat |
96 |
Q |
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| T |
6285955 |
ttaagcttatgttttagcaaataaacaaagttattagtggaatcttt-agtctcaattttccgccgttatttcaat |
6285881 |
T |
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