View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6625_high_3 (Length: 732)

Name: NF6625_high_3
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6625_high_3
NF6625_high_3
[»] chr3 (12 HSPs)
chr3 (75-713)||(38024255-38024899)
chr3 (365-713)||(38031002-38031351)
chr3 (412-713)||(38036513-38036817)
chr3 (505-713)||(50910076-50910281)
chr3 (373-588)||(50911607-50911825)
chr3 (507-713)||(38028585-38028790)
chr3 (516-713)||(38039910-38040105)
chr3 (167-264)||(38026030-38026127)
chr3 (609-713)||(38033695-38033799)
chr3 (595-713)||(55084902-55085020)
chr3 (638-713)||(48840661-48840736)
chr3 (638-713)||(50904741-50904816)
[»] chr8 (3 HSPs)
chr8 (365-713)||(21606974-21607320)
chr8 (507-713)||(21604573-21604778)
chr8 (505-690)||(21609617-21609805)
[»] chr4 (4 HSPs)
chr4 (641-713)||(17970415-17970487)
chr4 (140-175)||(3648894-3648929)
chr4 (140-175)||(56204982-56205017)
chr4 (681-714)||(27415736-27415769)
[»] chr2 (1 HSPs)
chr2 (641-713)||(3073685-3073757)


Alignment Details
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 75 - 713
Target Start/End: Original strand, 38024255 - 38024899
Alignment:
Q  75 ggtacaaaggtgactgaatgttttattaggctaataaatgtaaaataattgannnnnnnnnnnnn------gtagtggccggggtttgaatccggacctt 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                   || ||||||||||||||||||||||||||    
T  38024255 ggtacaaaggtgactgaatgttttattaggctaataaatgtaaaataattgattttttttaatttttttttgtggtggccggggtttgaatccggacctt 38024354  T
Q  169 gcatataacctattattagtacagttctaatcacattcgtgacaatggtcagaataaattcatgacctaaacatctgaaagcaccttgtattatatttgc 268  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  38024355 gcatataacctattat-agtacagttctaatcacattcgtgacaatggtcagaataaattcatgacctaaacatctaaaagcaccttatattatatttgc 38024453  T
Q  269 aatatgcttcaannnnnnncttggaataaaatatgtttcaagctttttctggctttatatttgctgcatattcgccttccacacagttaaacgcactata 368  Q
    ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38024454 aatatgcttcaatttttttcttggaataaaatatgtttcaagctttttctggctttatatttgctgcatattcgccttccacacagttaaacgcactata 38024553  T
Q  369 cttaattttcatcccaagcaatcattagttttgtaacttaatgtaaatagaggcatataagagccgtttgagttgttgaatacaatgtgtcattatgatt 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38024554 cttaattttcatcccaagcaatcattagttttgtaacttaatgtaaatagaagcatataagagccctttgagttgttgaatacaatgtgtcattatgatt 38024653  T
Q  469 agaattagaaagaaataacaacaaacaatgtcttgctgaatttgtctttcagatggacaaggctaacccattccaatggtaggaaaaggg-aaaaaatct 567  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |    
T  38024654 agaattagaaagaaataacaacaaacaatctcttgctgaatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagggaaaaaaaatt 38024753  T
Q  568 ttacaaatctaaatcatgactatagtatacaaagtgtcctagctaatctatgtcagtcttctttagtgtaagatttatagcccattgaagcgagaagtaa 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38024754 ttacaaatctaaatcatgactatagtatacaaagtgtcctagctaatctatgtcagtcttctttagtgtaagatttatagcccattgaagcgagaagtaa 38024853  T
Q  668 tttccatgaaaatatcttctgtgcaaggaatcgtgaggccacccat 713  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  38024854 tttccatgaaaatgtcttctgtgcaaggaatcgtgaggccacccat 38024899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 365 - 713
Target Start/End: Original strand, 38031002 - 38031351
Alignment:
Q  365 tatacttaattttcatcccaagcaatcattagttttgtaacttaatgtaaatagaggcatataagagccgtttgagttgttgaatacaatgtgtcattat 464  Q
    ||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||  | |||||||||||    
T  38031002 tatactttatttttatcccaagtaatcattagttttgtaacttaatgtaaatagaagcatataagagccctttgagttgttgaatgtagtgtgtcattat 38031101  T
Q  465 gattagaattagaaagaaataacaacaaacaatgtcttgctgaatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagggaaaa-a 563  Q
    ||||||||||||||| |||||| |||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||| |||| ||||||| |||| |    
T  38031102 gattagaattagaaataaataataacaaacaatctcttcctgaatttgtcattcagatggacaatgctaacccattccaaaggtatgaaaaggaaaaaaa 38031201  T
Q  564 atctttacaaatctaaatcatgactatagtatacaaagtgtcctagctaatctatgtcagtcttctttagtgtaagatttatagcccattgaagcgagaa 663  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38031202 atctttacaaatctaaatcatgactataatatacaaagtgtcctagctaatctatgtcagtcttctttagtgtaagatttatagcccattgaagcgagaa 38031301  T
Q  664 gtaatttccatgaaaatatcttctgtgcaaggaatcgtgaggccacccat 713  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38031302 gtaatttccatgaaaatgtcttctgtgcaaggaatcgtgaggccacccat 38031351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 412 - 713
Target Start/End: Original strand, 38036513 - 38036817
Alignment:
Q  412 taaatagaggcatataagagccgtttgagttgttgaatacaatgtgtcattatgattagaattagaaagaaataacaacaaacaatgtcttgctgaat-- 509  Q
    |||||||| ||||||| || ||  ||||||||||||||  | | | ||||||||||||  ||||||| ||||| | |||||| ||| | || ||||||      
T  38036513 taaatagaagcatataggatccaattgagttgttgaatgtattctttcattatgattatgattagaatgaaattataacaaataatttgttcctgaatga 38036612  T
Q  510 --ttgtctttcagatggacaaggctaacccattccaatggtaggaaaagggaa-aaaatctttacaaatctaaatcatgactatagtatacaaagtgtcc 606  Q
      ||||| |||||||||||||  ||||| |||||||| |||||||||| | || |||||||||||||||||||   || ||||| |||  |||| | | |    
T  38036613 atttgtcattcagatggacaattctaacacattccaaaggtaggaaaatgaaataaaatctttacaaatctaagcgatcactattgta--caaaattttc 38036710  T
Q  607 tagctaatctatgtcagtcttctttagtgtaagatttatagcccattgaagcgagaagtaatttccatgaaaatatcttctgtgcaaggaatcgtgaggc 706  Q
    |  ||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| | || |||||  | ||||||||||||||| |||||||    
T  38036711 tttctaatctatgtcagtctcctatagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtattctgtgcaaggaattgtgaggc 38036810  T
Q  707 cacccat 713  Q
    | |||||    
T  38036811 cgcccat 38036817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 505 - 713
Target Start/End: Complemental strand, 50910281 - 50910076
Alignment:
Q  505 tgaatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagggaa-aaaatctttacaaa-tctaaatcatgactatagtatacaaagt 602  Q
    |||||||||| |||||||||||||  ||   ||||||||  |||||||||| | || |||||||||||||| | |||||||||||||| |||  |||| |    
T  50910281 tgaatttgtcattcagatggacaattct---ccattccagaggtaggaaaatgaaacaaaatctttacaaaatataaatcatgactattgta--caaaat 50910187  T
Q  603 gtcctagctaatctatgtcagtcttctttagtgtaagatttatagcccattgaagcgagaagtaatttccatgaaaatatcttctgtgcaaggaatcgtg 702  Q
     |||  |||||||||||||||||| ||||| || |||||||||||| ||||||||||||||||||||| || ||| | |||||||||||||||||| |||    
T  50910186 ttccctgctaatctatgtcagtctcctttattgaaagatttatagctcattgaagcgagaagtaatttgcaagaagacatcttctgtgcaaggaattgtg 50910087  T
Q  703 aggccacccat 713  Q
    |||||||||||    
T  50910086 aggccacccat 50910076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 373 - 588
Target Start/End: Original strand, 50911607 - 50911825
Alignment:
Q  373 attttcatcccaagcaatcattagttttgtaacttaatgtaaatagaggcatataagagccgtttgagttgttgaatacaatgtgtcattatgattagaa 472  Q
    ||||| ||||||| ||||||||||||||||||||||    ||||||| |||||||  |||| |||||| ||||||||| |    ||||||||||||||||    
T  50911607 atttttatcccaaacaatcattagttttgtaactta--taaaatagaagcatatagaagccctttgaggtgttgaatatatcaagtcattatgattagaa 50911704  T
Q  473 ttagaaa-----gaaataacaacaaacaatgtcttgctgaatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagggaaaaaatct 567  Q
    || ||||      |||||| |||| ||||| |||| ||||| ||||| ||||||||||||| ||||||||||||||| || |||||| |||||||| |||    
T  50911705 ttggaaataaagtaaataataacatacaatctcttcctgaaattgtccttcagatggacaatgctaacccattccaaaggcaggaaaggggaaaaattct 50911804  T
Q  568 ttacaaatctaaatcatgact 588  Q
    |||||||||||||||||||||    
T  50911805 ttacaaatctaaatcatgact 50911825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 507 - 713
Target Start/End: Original strand, 38028585 - 38028790
Alignment:
Q  507 aatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagggaa-aaaatctttacaaatctaaatcatgactatagtatacaaagtgtc 605  Q
    |||||||| || | ||||||||   ||||||||||||| ||||| |||| | || |||||||  |||||||||||| |||||||| |||  |||| | |     
T  38028585 aatttgtcatttaaatggacaattataacccattccaaaggtagaaaaatgaaacaaaatctaaacaaatctaaatgatgactattgta--caaaatttt 38028682  T
Q  606 ctagctaatctatgtcagtcttctttagtgtaagatttatagcccattgaagcgagaagtaatttccatgaaaatatcttctgtgcaaggaatcgtgagg 705  Q
    || |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| | || |||||  ||||||||||||||||| ||||||    
T  38028683 cttgctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgagg 38028782  T
Q  706 ccacccat 713  Q
    || |||||    
T  38028783 ccgcccat 38028790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 516 - 713
Target Start/End: Original strand, 38039910 - 38040105
Alignment:
Q  516 ttcagatggacaaggctaacccattccaatggtaggaaaagggaa-aaaatctttacaaatctaaatcatgactatagtatacaaagtgtcctagctaat 614  Q
    |||||||||||||  |||| ||||||| |  ||||||||| | || ||||||||||||| ||||||| |||||||| |||  |||| | | || ||||||    
T  38039910 ttcagatggacaattctaaaccattcctaaagtaggaaaatgaaacaaaatctttacaa-tctaaatgatgactattgta--caaaattttcttgctaat 38040006  T
Q  615 ctatgtcagtcttctttagtgtaagatttatagcccattgaagcgagaagtaatttccatgaaaatatcttctgtgcaaggaatcgtgaggccacccat 713  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||| | || |||||  ||||||||||||||||| |||||||| |||||    
T  38040007 ctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccat 38040105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 167 - 264
Target Start/End: Original strand, 38026030 - 38026127
Alignment:
Q  167 ttgcatataacctattattagtacagttctaatcacattcgtgacaatggtcagaataaattcatgacctaaacatctgaaagcaccttgtattatat 264  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || |||||||||| ||||||||||||||    
T  38026030 ttgcatataacctattattagtacagttctagtcacattcttgacaatggtcagaataaattcatgaccaaatcatctgaaagaaccttgtattatat 38026127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 609 - 713
Target Start/End: Original strand, 38033695 - 38033799
Alignment:
Q  609 gctaatctatgtcagtcttctttagtgtaagatttatagcccattgaagcgagaagtaatttccatgaaaatatcttctgtgcaaggaatcgtgaggcca 708  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || ||||| |||||||||||| ||||| |||| |||     
T  38033695 gctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagcgagaagtaatatgcaagaaaacatcttctgtgcagggaattgtgatgccg 38033794  T
Q  709 cccat 713  Q
    |||||    
T  38033795 cccat 38033799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 595 - 713
Target Start/End: Complemental strand, 55085020 - 55084902
Alignment:
Q  595 tacaaagtgtcctagctaatctatgtcagtcttctttagtgtaagatttatagcccattgaagcgagaagtaatttccatgaaaatatcttctgtgcaag 694  Q
    |||||| ||||||||||||||||||||| |||  || ||||||||||||||||  ||||||||||||||||||| |  | ||||| ||||||||||||||    
T  55085020 tacaaaatgtcctagctaatctatgtcaatctctttcagtgtaagatttatagttcattgaagcgagaagtaatatgaaagaaaacatcttctgtgcaag 55084921  T
Q  695 gaatcgtgaggccacccat 713  Q
    |||| ||||||||||||||    
T  55084920 gaattgtgaggccacccat 55084902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 638 - 713
Target Start/End: Original strand, 48840661 - 48840736
Alignment:
Q  638 agatttatagcccattgaagcgagaagtaatttccatgaaaatatcttctgtgcaaggaatcgtgaggccacccat 713  Q
    ||||||||||||||||||||| |  |||||| | || ||||| |||||||||||||||||| ||||||||||||||    
T  48840661 agatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgaggccacccat 48840736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 638 - 713
Target Start/End: Original strand, 50904741 - 50904816
Alignment:
Q  638 agatttatagcccattgaagcgagaagtaatttccatgaaaatatcttctgtgcaaggaatcgtgaggccacccat 713  Q
    ||||||| |||||||||||||||||||| || | ||  ||||  |||||| |||||||||| ||||||||||||||    
T  50904741 agatttacagcccattgaagcgagaagtgatatgcaaaaaaacctcttctctgcaaggaatggtgaggccacccat 50904816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 365 - 713
Target Start/End: Original strand, 21606974 - 21607320
Alignment:
Q  365 tatacttaattttcatcccaagcaatcattagttttgtaacttaatgtaaatagaggcatataagagccgtttgagttgttgaatacaatgtgtcattat 464  Q
    ||||||| ||||| |||||||| |||||||||||||||||||||   |||||||| ||||||||||||| |||||||||||||||  | |||||||||||    
T  21606974 tatactttatttttatcccaagtaatcattagttttgtaactta---taaatagaagcatataagagccctttgagttgttgaatgtagtgtgtcattat 21607070  T
Q  465 gattagaattagaaagaaataacaacaaacaatgtcttgctgaatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagggaaaa-a 563  Q
    ||||||||||||||| |||||| |||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||| |||| ||||||| |||| |    
T  21607071 gattagaattagaaataaataataacaaacaatctcttcctgaatttgtcattcagatggacaatgctaacccattccaaaggtatgaaaaggaaaaaaa 21607170  T
Q  564 atctttacaaatctaaatcatgactatagtatacaaagtgtcctagctaatctatgtcagtcttctttagtgtaagatttatagcccattgaagcgagaa 663  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21607171 atctttacaaatctaaatcatgactataatatacaaagtgtcctagctaatctatgtcagtcttctttagtgtaagatttatagcccattgaagcgagaa 21607270  T
Q  664 gtaatttccatgaaaatatcttctgtgcaaggaatcgtgaggccacccat 713  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21607271 gtaatttccatgaaaatatcttctgtgcaaggaaccgtgaggccacccat 21607320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 507 - 713
Target Start/End: Original strand, 21604573 - 21604778
Alignment:
Q  507 aatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagggaa-aaaatctttacaaatctaaatcatgactatagtatacaaagtgtc 605  Q
    |||||||| || | ||||||||   ||||||||||||| ||||| |||| | || ||||||| ||||||||||||| |||||||| |||  |||| | |     
T  21604573 aatttgtcatttaaatggacaattataacccattccaaaggtagaaaaatgaaacaaaatctatacaaatctaaatgatgactattgta--caaaatttt 21604670  T
Q  606 ctagctaatctatgtcagtcttctttagtgtaagatttatagcccattgaagcgagaagtaatttccatgaaaatatcttctgtgcaaggaatcgtgagg 705  Q
    || |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| | || |||||  ||||||||||||||||| ||||||    
T  21604671 cttgctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgagg 21604770  T
Q  706 ccacccat 713  Q
    || |||||    
T  21604771 ccgcccat 21604778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 505 - 690
Target Start/End: Original strand, 21609617 - 21609805
Alignment:
Q  505 tgaatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagggaa-aaaatctttacaaatcta----aatcatgactatagtatacaa 599  Q
    |||||||| | ||||| |||||||  |||| ||||||| | |||||||||| | || ||||||||||||||||||    ||| |||||||| |||  |||    
T  21609617 tgaatttgccattcaggtggacaattctaaaccattcctaaggtaggaaaatgaaacaaaatctttacaaatctagctaaatgatgactattgta--caa 21609714  T
Q  600 agtgtcctagctaatctatgtcagtcttctttagtgtaagatttatagcccattgaagcgagaagtaatttccatgaaaatatcttctgtg 690  Q
    | | | || |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| | || |||||| |||||||||    
T  21609715 aattttcttgctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaatgtcttctgtg 21609805  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 641 - 713
Target Start/End: Complemental strand, 17970487 - 17970415
Alignment:
Q  641 tttatagcccattgaagcgagaagtaatttccatgaaaatatcttctgtgcaaggaatcgtgaggccacccat 713  Q
    ||||||| |||||||||| ||||||||  | ||  |||| |||||||||||||||||| ||||||||||||||    
T  17970487 tttatagaccattgaagctagaagtaacatgcaaaaaaacatcttctgtgcaaggaattgtgaggccacccat 17970415  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 175
Target Start/End: Original strand, 3648894 - 3648929
Alignment:
Q  140 gtagtggccggggtttgaatccggaccttgcatata 175  Q
    |||||||||||| |||||||||||||||||||||||    
T  3648894 gtagtggccgggatttgaatccggaccttgcatata 3648929  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 175
Target Start/End: Complemental strand, 56205017 - 56204982
Alignment:
Q  140 gtagtggccggggtttgaatccggaccttgcatata 175  Q
    |||||||||| |||||||||||||||||||||||||    
T  56205017 gtagtggccgaggtttgaatccggaccttgcatata 56204982  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 714
Target Start/End: Complemental strand, 27415769 - 27415736
Alignment:
Q  681 atcttctgtgcaaggaatcgtgaggccacccatg 714  Q
    |||||||||||||||||| |||||||||||||||    
T  27415769 atcttctgtgcaaggaatggtgaggccacccatg 27415736  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 641 - 713
Target Start/End: Complemental strand, 3073757 - 3073685
Alignment:
Q  641 tttatagcccattgaagcgagaagtaatttccatgaaaatatcttctgtgcaaggaatcgtgaggccacccat 713  Q
    ||||||| |||||||||| ||||||||  | ||  |||| |||||||||||||||||| ||||||||||||||    
T  3073757 tttatagaccattgaagctagaagtaacatgcaaaaaaacatcttctgtgcaaggaattgtgaggccacccat 3073685  T

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