View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_high_32 (Length: 321)
Name: NF6625_high_32
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 164 - 303
Target Start/End: Original strand, 41450458 - 41450598
Alignment:
| Q |
164 |
tttatcatcttttctttcttgctataaaagaaagacaagtaaatccagtttatgttttacatcttcgttagtaattatagaaccaaaaatacttcccctt |
263 |
Q |
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| T |
41450458 |
tttatcatcttttctttcttgctataaaagaaagacaagtaaatctagtttatgttttacatcttcgttagtaattatagaaccaaaaatacttcccctt |
41450557 |
T |
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| Q |
264 |
tgaaccactgcctcctt-atacaatctccagggtccagcac |
303 |
Q |
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| T |
41450558 |
tgaaccactacctccttaatacaatctccagggtccagcac |
41450598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 41449515 - 41449651
Alignment:
| Q |
32 |
tacattcattctttcgctaaatacaatgatgtatatgattagaaaacctccaaaggtttggtcgtactcttggttcattttttatatatccatattcgct |
131 |
Q |
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| T |
41449515 |
tacattcattctttcgctgaagacaatgatgtatatgattagaaagcctccaaaggtttggtcttactcttggttcattttttatatatccatattcgct |
41449614 |
T |
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| Q |
132 |
aagcttgctttactacgttacatataaaaagttttat |
168 |
Q |
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| T |
41449615 |
aagcttgctttgctacgtcacatataaaaagttttat |
41449651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 41432300 - 41432389
Alignment:
| Q |
32 |
tacattcattctttcgctaaatacaatgatgtatatgattagaaaacctccaaaggtttggtcgtactcttggttcattttttatatatc |
121 |
Q |
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| T |
41432300 |
tacattcattctatcgctgaagacaatgctgtatacgataagaaagcctccaaaggtttggttctactcttgattcatttcttttatatc |
41432389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 33370594 - 33370679
Alignment:
| Q |
36 |
ttcattctttcgctaaatacaatgatgtatatgattagaaaacctccaaaggtttggtcgtactcttggttcattttttatatatc |
121 |
Q |
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| T |
33370594 |
ttcattctatcgttgaagacaatgatgtatatgattagaaagcctccaaaggtttggttccacttttggttcatttcttttatatc |
33370679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 33371316 - 33371397
Alignment:
| Q |
164 |
tttatcatcttttctttcttgctataaaagaaagacaagtaaatccagtttatgttttacatcttcgttagtaattatagaa |
245 |
Q |
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|||||||| ||||||||||||| |||||||||| ||| |||| ||||||| |||| ||||||| |||||||||| |||| |
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| T |
33371316 |
tttatcataatttctttcttgctctaaaagaaaggtaagcaaatatagtttatatttttcatcttcattagtaattacagaa |
33371397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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