View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_high_37 (Length: 298)
Name: NF6625_high_37
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 11331403 - 11331139
Alignment:
| Q |
19 |
gctccaaaatgtcggtttgcgataaggtctatctcacgagaaaaaatgagttttgtaacatacatggattatttaataagatatgcaatcaacacaaaca |
118 |
Q |
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| T |
11331403 |
gctccaaaatgtcggtttgcgataaggtctatctcacgagaaaa--tgagttttgtaacatacatggattatttaataagatatgcaatcaacacaaaca |
11331306 |
T |
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| Q |
119 |
aaattctaagcattttttacttttcataatatttcaccaaattcaaaatcggacgagaataagataaaaagttgatgcacttcaagagacaacaacaaaa |
218 |
Q |
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| T |
11331305 |
aaattctaaccattttttacttttcataatatt-caccaaattcaaaatcggacgagaataagataaaaagttgttgcacttcaagagacaacaacaaaa |
11331207 |
T |
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| Q |
219 |
cataaagtagaaaaacattgaacatctaagacgaacctgagaaatttgttctgcatggctgaaatatt |
286 |
Q |
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| T |
11331206 |
cataaagtagaaaaacattgaacatctaagacgaacctgagaaatttgttctgcatggctgaaatatt |
11331139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 298
Target Start/End: Original strand, 7177253 - 7177369
Alignment:
| Q |
184 |
aaaaagttgatgcacttcaagagacaacaacaaaacataaagtagaaaaa-cattgaacatctaagacgaacctgagaaatttgttctgcatggctg-aa |
281 |
Q |
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| T |
7177253 |
aaaaagttgatgcacttcaaacaacaataacaaaacataaaggggaaaaaacattatacatccaagacaaacctgggaaatttgctctgcatggctgaaa |
7177352 |
T |
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| Q |
282 |
atattcttggagatgcg |
298 |
Q |
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| T |
7177353 |
atatttttgaagatgcg |
7177369 |
T |
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