View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6625_high_45 (Length: 262)
Name: NF6625_high_45
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_high_45 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 41160922 - 41160691
Alignment:
| Q |
18 |
ggttcttggccatgagaaacgatctccactagagtgaacacccgctggataaaagaaaaactgtgaagatatctcttccactttcccagtttcaattctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41160922 |
ggttcttggccatgagaaacgatctccattagagtgaacacccgctggataaaagaaaaactgtgaaaatatctcttccactttcccagtttcaattctt |
41160823 |
T |
|
| Q |
118 |
ggtcacatctgatctctatcgatgccagtggatgttggtaataaaattgtgaacaaatttttgcttttcaagagaa--tttttctactataaaaactacc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
41160822 |
ggtcacatctgatctctatcgatgccagtggatgttggtaataaaattgtgaacaaatttttgcttttcaagaggatttttttctactataaaaactacc |
41160723 |
T |
|
| Q |
216 |
aagttaaatataagatgcttgagtaatgaaat |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
41160722 |
aagttaaatataagatgcttgagtaatgaaat |
41160691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 32656578 - 32656515
Alignment:
| Q |
24 |
tggccatgagaaacgatctccactagagtgaacacccgctggataaaagaaaaactgtgaagata |
88 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| || |||| |||| |||| ||||||||||||||| |
|
|
| T |
32656578 |
tggccatgagaaatgatttccactagagtgacca-ccgccggattaaaggaaaactgtgaagata |
32656515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University