View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_high_5 (Length: 639)
Name: NF6625_high_5
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 537; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 623
Target Start/End: Original strand, 47050411 - 47051037
Alignment:
| Q |
1 |
cgcatgtccaagaatatgtggctcgacgaagctgacaaaggcaacgttgttgcaaagtgatgcacttccgatcggttttgagacaaaatatcattcaatc |
100 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47050411 |
cgcatgaccgagaatatgtggctcgacgaagctgacaaaggcaacgttgttgcaaagtgatgcacttccgatcggttttgagacaaaatatcattcaatc |
47050510 |
T |
|
| Q |
101 |
taaataacatggggttggtttgttt------------aaaaaataaactcgatatgatcaaaatataagcggtctaatttgaattggcttttttatatcc |
188 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47050511 |
taaataacatggggttggtttgtttgcatgtttgtttaaacaataaactcgatatgatcaaaatataagcggtctaatttgaattgacttttttatatcc |
47050610 |
T |
|
| Q |
189 |
aaagtgcaatatgtatatccaaacttaattcagcgcacacacaaaccacttaattcgaaattaatagtatgattattacattaccaaattaaaaataagt |
288 |
Q |
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| T |
47050611 |
aaagtacaacatgtatatccaaacttaattcagcgcacacacaaaccacttaattcgaaattaatagtatgattattacattaccaaattaaaaataagt |
47050710 |
T |
|
| Q |
289 |
ttaaaaagtaaacaagttgttgctccaattgtggctctagctttctagctttcacatggtcatcaaatcttatcttatataaagacaagtttttctcgtc |
388 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47050711 |
ttaaaaagtaaacaagttgttgctccaattgtggctcta--------gctttcacatggtcatcaaatcttatcttatataaagacaagtttttctcgtc |
47050802 |
T |
|
| Q |
389 |
ctactacaacttcgtctttgagcttttcacccatcctttcacgccctcctttaaaccacagaggatgagagttccagctaaagccgtcaacttctgtcca |
488 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47050803 |
ctactacaacttcgtctttgagcttttcacccatcctttcacgccctcctttaaaccacagaggatgagagttccagctaaagccgtcaacttctgtcca |
47050902 |
T |
|
| Q |
489 |
atagggactcaacactatttgctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattca |
588 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47050903 |
atagggactcaacactatttgctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattca |
47051002 |
T |
|
| Q |
589 |
ataacccttatatcatgatgagataatatctcaac |
623 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |
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| T |
47051003 |
ataacccttatatcatcatgagataatatctcaac |
47051037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 479 - 593
Target Start/End: Original strand, 48106929 - 48107043
Alignment:
| Q |
479 |
cttctgtccaatagggactcaacactatttgctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacc |
578 |
Q |
| |
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||||| ||||| |||| |||| |||||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||| || |
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| T |
48106929 |
cttctctccaaaaggggctcacaactatttgctcaagtttgtgggcatattttagaacattcataacaaattcaatttcataccaattgccaacacagcc |
48107028 |
T |
|
| Q |
579 |
tctcaattcaataac |
593 |
Q |
| |
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|| ||||||||||| |
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| T |
48107029 |
tcctaattcaataac |
48107043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 504 - 592
Target Start/End: Complemental strand, 48895849 - 48895761
Alignment:
| Q |
504 |
tatttgctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataa |
592 |
Q |
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|||||||| ||||||||| | |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
48895849 |
tatttgctgaagcttgtgacaatattttagaacattcataacaaactcaatttcaaaccaattgccaacacaacctcccaattcaataa |
48895761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 502 - 593
Target Start/End: Complemental strand, 47929518 - 47929427
Alignment:
| Q |
502 |
actatttgctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataac |
593 |
Q |
| |
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||||||| |||||| ||||| ||| |||||| ||||||| ||||||||||||||||| |||||||||||||||| |||| ||||||||||| |
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| T |
47929518 |
actattttctcaagtttgtgtgcatattttataacattcataacaaactcaatttcaaaccaattgccaacacatcctccaaattcaataac |
47929427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 505 - 593
Target Start/End: Original strand, 48105963 - 48106051
Alignment:
| Q |
505 |
atttgctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataac |
593 |
Q |
| |
|
||||||||||| || || || |||||| ||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
48105963 |
atttgctcaagtttatgaacatattttaaaacattcctaacaaactcaatttcataccaattatcaacacaacctcccaattcaataac |
48106051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 510 - 593
Target Start/End: Original strand, 48452879 - 48452960
Alignment:
| Q |
510 |
ctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataac |
593 |
Q |
| |
|
|||||| ||||||||| |||||| |||||| | |||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
48452879 |
ctcaagtttgtgggcatatttta--acattcatgacaaactcaatttcatacgaattgccaacacaacctcccaattcaataac |
48452960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 502 - 593
Target Start/End: Complemental strand, 39403657 - 39403566
Alignment:
| Q |
502 |
actatttgctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataac |
593 |
Q |
| |
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||||||||||| || || |||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
39403657 |
actatttgctcgagtttatgggcatattttagaacattcgtaacaaactcaatttcaaaccaattgccaacacaaccttcaaattcaataac |
39403566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 493 - 593
Target Start/End: Complemental strand, 50460410 - 50460310
Alignment:
| Q |
493 |
ggactcaacactatttgctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataa |
592 |
Q |
| |
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|||||||| |||||| ||||| | || |||||| |||| ||| ||||| | |||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
50460410 |
ggactcaaaactattcgctcatgtttctgggcatatttcagagcattcattacaaactcaatttcataccaattgccaacacagcctcccaattcaataa |
50460311 |
T |
|
| Q |
593 |
c |
593 |
Q |
| |
|
| |
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|
| T |
50460310 |
c |
50460310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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